Gcaud1446.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1446.t1
Unique Name	Gcaud1446.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1021_length_14946_cov_4.146752	contig	NODE_1021_length_14946_cov_4.146752:6444..7295 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD10207
PFAMs	Zip
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14709
KEGG TC	2.A.5.1,2.A.5.3,2.A.5.6
Evalue	5.28e-17
EggNOG OGs	KOG1558@1\|root,KOG1558@2759\|Eukaryota
Description	zinc ion transmembrane transporter activity
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1446	Gcaud1446	Gracilaria caudata M_176_S67 male	gene	NODE_1021_length_14946_cov_4.146752 6444..7295 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1446.t1.stop1	Gcaud1446.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1021_length_14946_cov_4.146752 6444..6446 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1446.t1.CDS1	Gcaud1446.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 6444..7295 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1446.t1.exon1	Gcaud1446.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 6444..7295 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1446.t1.start1	Gcaud1446.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1021_length_14946_cov_4.146752 7293..7295 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1446.t1	Gcaud1446.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1021_length_14946_cov_4.146752 6444..7295 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1021_length_14946_cov_4.146752:6444..7295-
coding sequence from alignment at NODE_1021_length_14946_cov_4.146752:6444..7295-

mRNA sequence

>Gcaud1446.t1 ID=Gcaud1446.t1|Name=Gcaud1446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=284bp
MTAVGCSTASLTILSVFALALSGSLAPVLLASPAHNVRLLRYGNAFSAGF
LVAAALVHIVPSAMISLSENVSTSYPLGGLFALVGVCAVFMLDMLARRIQ
TSNGKTLPLHSHGGHSQARSPAVAVVLAASLSFHSFLEGVSLGVSLLDAA
SFAALSIAILVHKLFAALALGSALTTSADGDPKLQRRSVYMCIFFASVAP
VGAVSGIALLGMLPDHMGALLMPALNLLSAGVFIYVALVELLADEFRYAS
LNHYTDLNPDDSLASMAVFVLAAGAMSLLALWT*

spliced messenger RNA

>Gcaud1446.t1 ID=Gcaud1446.t1|Name=Gcaud1446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=852bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:6444..7295- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCGTCGGCTGCAGTACCGCCAGTCTCACCATTCTCTCAGTCTT
CGCGCTCGCGCTCTCTGGCTCTCTGGCGCCCGTCTTGCTCGCCTCTCCTG
CTCATAATGTGCGCCTTTTGCGTTATGGAAATGCCTTCTCCGCCGGCTTT
CTGGTTGCCGCCGCGCTTGTACATATCGTACCGTCTGCCATGATCTCGCT
TTCCGAGAATGTTTCCACAAGTTATCCGCTCGGTGGCTTGTTTGCTTTGG
TTGGCGTTTGTGCTGTGTTCATGCTGGATATGCTTGCACGTCGCATCCAA
ACGAGCAACGGTAAGACGCTTCCACTTCACTCGCACGGTGGTCATTCGCA
GGCTCGTTCTCCTGCCGTCGCCGTCGTTCTTGCCGCATCTCTCTCGTTCC
ATTCCTTTTTGGAAGGAGTATCACTTGGCGTCAGTTTGCTAGATGCCGCC
TCATTCGCCGCACTCTCAATCGCCATCCTGGTGCACAAGCTTTTTGCCGC
ACTGGCCCTCGGCTCGGCTCTGACGACCTCGGCCGACGGCGACCCCAAAC
TTCAGAGGCGTTCTGTTTACATGTGCATTTTCTTCGCAAGCGTTGCGCCA
GTTGGTGCCGTCAGTGGCATTGCACTACTCGGTATGTTACCAGACCATAT
GGGCGCTCTGCTCATGCCGGCTTTGAATCTACTTTCGGCGGGGGTGTTTA
TATACGTCGCATTGGTAGAACTTCTTGCAGATGAATTCCGTTATGCGTCG
TTGAACCACTATACAGACCTGAACCCTGACGATTCACTGGCTAGCATGGC
TGTTTTTGTGCTGGCTGCTGGGGCGATGAGCCTACTTGCTCTGTGGACAT
AG

protein sequence of Gcaud1446.t1

>Gcaud1446.t1 ID=Gcaud1446.t1|Name=Gcaud1446.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=284bp
MTAVGCSTASLTILSVFALALSGSLAPVLLASPAHNVRLLRYGNAFSAGF
LVAAALVHIVPSAMISLSENVSTSYPLGGLFALVGVCAVFMLDMLARRIQ
TSNGKTLPLHSHGGHSQARSPAVAVVLAASLSFHSFLEGVSLGVSLLDAA
SFAALSIAILVHKLFAALALGSALTTSADGDPKLQRRSVYMCIFFASVAP
VGAVSGIALLGMLPDHMGALLMPALNLLSAGVFIYVALVELLADEFRYAS
LNHYTDLNPDDSLASMAVFVLAAGAMSLLALWT*

mRNA from alignment at NODE_1021_length_14946_cov_4.146752:6444..7295-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1446.t1 ID=Gcaud1446.t1|Name=Gcaud1446.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=852bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:6444..7295- (Gracilaria caudata M_176_S67 male)
ATGACCGCCGTCGGCTGCAGTACCGCCAGTCTCACCATTCTCTCAGTCTT
CGCGCTCGCGCTCTCTGGCTCTCTGGCGCCCGTCTTGCTCGCCTCTCCTG
CTCATAATGTGCGCCTTTTGCGTTATGGAAATGCCTTCTCCGCCGGCTTT
CTGGTTGCCGCCGCGCTTGTACATATCGTACCGTCTGCCATGATCTCGCT
TTCCGAGAATGTTTCCACAAGTTATCCGCTCGGTGGCTTGTTTGCTTTGG
TTGGCGTTTGTGCTGTGTTCATGCTGGATATGCTTGCACGTCGCATCCAA
ACGAGCAACGGTAAGACGCTTCCACTTCACTCGCACGGTGGTCATTCGCA
GGCTCGTTCTCCTGCCGTCGCCGTCGTTCTTGCCGCATCTCTCTCGTTCC
ATTCCTTTTTGGAAGGAGTATCACTTGGCGTCAGTTTGCTAGATGCCGCC
TCATTCGCCGCACTCTCAATCGCCATCCTGGTGCACAAGCTTTTTGCCGC
ACTGGCCCTCGGCTCGGCTCTGACGACCTCGGCCGACGGCGACCCCAAAC
TTCAGAGGCGTTCTGTTTACATGTGCATTTTCTTCGCAAGCGTTGCGCCA
GTTGGTGCCGTCAGTGGCATTGCACTACTCGGTATGTTACCAGACCATAT
GGGCGCTCTGCTCATGCCGGCTTTGAATCTACTTTCGGCGGGGGTGTTTA
TATACGTCGCATTGGTAGAACTTCTTGCAGATGAATTCCGTTATGCGTCG
TTGAACCACTATACAGACCTGAACCCTGACGATTCACTGGCTAGCATGGC
TGTTTTTGTGCTGGCTGCTGGGGCGATGAGCCTACTTGCTCTGTGGACAT
AG

Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:6444..7295-

>Gcaud1446.t1 ID=Gcaud1446.t1|Name=Gcaud1446.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=852bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:6444..7295- (Gracilaria caudata M_176_S67 male)
ATGACCGCCGTCGGCTGCAGTACCGCCAGTCTCACCATTCTCTCAGTCTT
CGCGCTCGCGCTCTCTGGCTCTCTGGCGCCCGTCTTGCTCGCCTCTCCTG
CTCATAATGTGCGCCTTTTGCGTTATGGAAATGCCTTCTCCGCCGGCTTT
CTGGTTGCCGCCGCGCTTGTACATATCGTACCGTCTGCCATGATCTCGCT
TTCCGAGAATGTTTCCACAAGTTATCCGCTCGGTGGCTTGTTTGCTTTGG
TTGGCGTTTGTGCTGTGTTCATGCTGGATATGCTTGCACGTCGCATCCAA
ACGAGCAACGGTAAGACGCTTCCACTTCACTCGCACGGTGGTCATTCGCA
GGCTCGTTCTCCTGCCGTCGCCGTCGTTCTTGCCGCATCTCTCTCGTTCC
ATTCCTTTTTGGAAGGAGTATCACTTGGCGTCAGTTTGCTAGATGCCGCC
TCATTCGCCGCACTCTCAATCGCCATCCTGGTGCACAAGCTTTTTGCCGC
ACTGGCCCTCGGCTCGGCTCTGACGACCTCGGCCGACGGCGACCCCAAAC
TTCAGAGGCGTTCTGTTTACATGTGCATTTTCTTCGCAAGCGTTGCGCCA
GTTGGTGCCGTCAGTGGCATTGCACTACTCGGTATGTTACCAGACCATAT
GGGCGCTCTGCTCATGCCGGCTTTGAATCTACTTTCGGCGGGGGTGTTTA
TATACGTCGCATTGGTAGAACTTCTTGCAGATGAATTCCGTTATGCGTCG
TTGAACCACTATACAGACCTGAACCCTGACGATTCACTGGCTAGCATGGC
TGTTTTTGTGCTGGCTGCTGGGGCGATGAGCCTACTTGCTCTGTGGACAT
AG