Gcaud1444.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1444.t1
Unique NameGcaud1444.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1021_length_14946_cov_4.146752contigNODE_1021_length_14946_cov_4.146752:3477..4298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog63737.Npun_R3805
Preferred namecpeZ
PFAMsHEAT_2
Max annot lvl1117|Cyanobacteria
KEGG koko:K05386
KEGG Pathwayko00196,ko01100,map00196,map01100
Evalue1.27e-28
EggNOG OGsCOG1413@1|root,COG1413@2|Bacteria,1G510@1117|Cyanobacteria,1HN6H@1161|Nostocales
DescriptionHEAT repeats
COG categoryC
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1444Gcaud1444Gracilaria caudata M_176_S67 malegeneNODE_1021_length_14946_cov_4.146752 3477..4298 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1444.t1.start1Gcaud1444.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1021_length_14946_cov_4.146752 3477..3479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1444.t1.CDS1Gcaud1444.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1021_length_14946_cov_4.146752 3477..4298 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1444.t1.exon1Gcaud1444.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1021_length_14946_cov_4.146752 3477..4298 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1444.t1.stop1Gcaud1444.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1021_length_14946_cov_4.146752 4296..4298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1444.t1Gcaud1444.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1021_length_14946_cov_4.146752 3477..4298 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1444.t1 ID=Gcaud1444.t1|Name=Gcaud1444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=274bp
MAKVPLFIPALPVRSRAFPARATAPLRRRAPPLCSAVPPPPAPDVENLFS
RLKHVNKNLRKKASAELADIATEPIIARLVSLLDVEDVSHRRTAVQALAM
TGTPALPPVLAQLKSTENPTVRASCSKVIAGVALFFPDLRENFSTDALDA
LQSALQTADPVTKLATVGCLGTLGSDQKQRDQLIARGSQRALQILLSVCT
PEADIAVAAAAVGALAQIAQNGSPEQKEAIISHLQSLTDSSGFDDQSGAN
YVQEIAISHLEQLEGAPIASNPK*
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spliced messenger RNA

>Gcaud1444.t1 ID=Gcaud1444.t1|Name=Gcaud1444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:3477..4298+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAAAGTACCGCTCTTCATCCCCGCGCTCCCCGTTCGCTCCCGTGC
CTTCCCCGCACGCGCAACGGCGCCGCTGCGACGGCGAGCCCCACCGCTCT
GCTCTGCCGTCCCCCCACCGCCCGCCCCTGACGTCGAGAACCTGTTCTCC
CGCCTCAAACACGTCAACAAGAACCTGCGCAAAAAGGCTTCAGCTGAGCT
AGCAGACATCGCTACAGAGCCCATCATCGCACGCCTCGTATCGCTCCTCG
ATGTCGAAGATGTCTCTCATCGCCGTACAGCAGTGCAAGCCCTTGCCATG
ACCGGCACACCAGCGCTACCACCAGTTCTCGCCCAGCTGAAGTCCACGGA
GAATCCCACCGTACGTGCGTCCTGCTCAAAGGTCATTGCCGGCGTTGCAC
TATTTTTCCCCGATCTGCGCGAGAATTTTTCCACCGATGCTCTCGATGCA
TTGCAATCTGCCTTACAAACCGCAGACCCAGTTACCAAACTGGCTACCGT
GGGTTGTTTGGGCACACTTGGCAGTGATCAGAAGCAGAGAGATCAACTCA
TTGCACGCGGAAGTCAAAGAGCTCTTCAAATTCTGCTCTCCGTGTGTACC
CCAGAAGCAGATATAGCTGTGGCCGCTGCAGCCGTGGGAGCTCTCGCCCA
AATCGCACAGAACGGATCCCCGGAGCAGAAAGAAGCCATCATTTCTCATC
TTCAGAGTCTAACTGACTCTTCTGGTTTTGATGACCAGTCCGGCGCAAAT
TACGTTCAAGAAATAGCCATATCTCATCTAGAACAGTTGGAAGGCGCTCC
AATCGCTTCAAATCCCAAGTAA
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protein sequence of Gcaud1444.t1

>Gcaud1444.t1 ID=Gcaud1444.t1|Name=Gcaud1444.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=274bp
MAKVPLFIPALPVRSRAFPARATAPLRRRAPPLCSAVPPPPAPDVENLFS
RLKHVNKNLRKKASAELADIATEPIIARLVSLLDVEDVSHRRTAVQALAM
TGTPALPPVLAQLKSTENPTVRASCSKVIAGVALFFPDLRENFSTDALDA
LQSALQTADPVTKLATVGCLGTLGSDQKQRDQLIARGSQRALQILLSVCT
PEADIAVAAAAVGALAQIAQNGSPEQKEAIISHLQSLTDSSGFDDQSGAN
YVQEIAISHLEQLEGAPIASNPK*
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mRNA from alignment at NODE_1021_length_14946_cov_4.146752:3477..4298+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1444.t1 ID=Gcaud1444.t1|Name=Gcaud1444.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=822bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:3477..4298+ (Gracilaria caudata M_176_S67 male)
ATGGCGAAAGTACCGCTCTTCATCCCCGCGCTCCCCGTTCGCTCCCGTGC
CTTCCCCGCACGCGCAACGGCGCCGCTGCGACGGCGAGCCCCACCGCTCT
GCTCTGCCGTCCCCCCACCGCCCGCCCCTGACGTCGAGAACCTGTTCTCC
CGCCTCAAACACGTCAACAAGAACCTGCGCAAAAAGGCTTCAGCTGAGCT
AGCAGACATCGCTACAGAGCCCATCATCGCACGCCTCGTATCGCTCCTCG
ATGTCGAAGATGTCTCTCATCGCCGTACAGCAGTGCAAGCCCTTGCCATG
ACCGGCACACCAGCGCTACCACCAGTTCTCGCCCAGCTGAAGTCCACGGA
GAATCCCACCGTACGTGCGTCCTGCTCAAAGGTCATTGCCGGCGTTGCAC
TATTTTTCCCCGATCTGCGCGAGAATTTTTCCACCGATGCTCTCGATGCA
TTGCAATCTGCCTTACAAACCGCAGACCCAGTTACCAAACTGGCTACCGT
GGGTTGTTTGGGCACACTTGGCAGTGATCAGAAGCAGAGAGATCAACTCA
TTGCACGCGGAAGTCAAAGAGCTCTTCAAATTCTGCTCTCCGTGTGTACC
CCAGAAGCAGATATAGCTGTGGCCGCTGCAGCCGTGGGAGCTCTCGCCCA
AATCGCACAGAACGGATCCCCGGAGCAGAAAGAAGCCATCATTTCTCATC
TTCAGAGTCTAACTGACTCTTCTGGTTTTGATGACCAGTCCGGCGCAAAT
TACGTTCAAGAAATAGCCATATCTCATCTAGAACAGTTGGAAGGCGCTCC
AATCGCTTCAAATCCCAAGTAA
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Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:3477..4298+

>Gcaud1444.t1 ID=Gcaud1444.t1|Name=Gcaud1444.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=822bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:3477..4298+ (Gracilaria caudata M_176_S67 male)
ATGGCGAAAGTACCGCTCTTCATCCCCGCGCTCCCCGTTCGCTCCCGTGC
CTTCCCCGCACGCGCAACGGCGCCGCTGCGACGGCGAGCCCCACCGCTCT
GCTCTGCCGTCCCCCCACCGCCCGCCCCTGACGTCGAGAACCTGTTCTCC
CGCCTCAAACACGTCAACAAGAACCTGCGCAAAAAGGCTTCAGCTGAGCT
AGCAGACATCGCTACAGAGCCCATCATCGCACGCCTCGTATCGCTCCTCG
ATGTCGAAGATGTCTCTCATCGCCGTACAGCAGTGCAAGCCCTTGCCATG
ACCGGCACACCAGCGCTACCACCAGTTCTCGCCCAGCTGAAGTCCACGGA
GAATCCCACCGTACGTGCGTCCTGCTCAAAGGTCATTGCCGGCGTTGCAC
TATTTTTCCCCGATCTGCGCGAGAATTTTTCCACCGATGCTCTCGATGCA
TTGCAATCTGCCTTACAAACCGCAGACCCAGTTACCAAACTGGCTACCGT
GGGTTGTTTGGGCACACTTGGCAGTGATCAGAAGCAGAGAGATCAACTCA
TTGCACGCGGAAGTCAAAGAGCTCTTCAAATTCTGCTCTCCGTGTGTACC
CCAGAAGCAGATATAGCTGTGGCCGCTGCAGCCGTGGGAGCTCTCGCCCA
AATCGCACAGAACGGATCCCCGGAGCAGAAAGAAGCCATCATTTCTCATC
TTCAGAGTCTAACTGACTCTTCTGGTTTTGATGACCAGTCCGGCGCAAAT
TACGTTCAAGAAATAGCCATATCTCATCTAGAACAGTTGGAAGGCGCTCC
AATCGCTTCAAATCCCAAGTAA
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