Gcaud1422.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1422.t1
Unique NameGcaud1422.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length76
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_653_length_20221_cov_4.515748contigNODE_653_length_20221_cov_4.515748:15829..16145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD068CT
Max annot lvl2759|Eukaryota
Evalue1.39e-18
EggNOG OGs2CGJ1@1|root,2SBJS@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1422Gcaud1422Gracilaria caudata M_176_S67 malegeneNODE_653_length_20221_cov_4.515748 15829..16145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1422.t1Gcaud1422.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_653_length_20221_cov_4.515748 15829..16145 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1422.t1.stop1Gcaud1422.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_653_length_20221_cov_4.515748 15829..15831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1422.t1.CDS1Gcaud1422.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_653_length_20221_cov_4.515748 15829..15897 -
Gcaud1422.t1.CDS2Gcaud1422.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_653_length_20221_cov_4.515748 15987..16145 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1422.t1.exon1Gcaud1422.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_653_length_20221_cov_4.515748 15829..15897 -
Gcaud1422.t1.exon2Gcaud1422.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_653_length_20221_cov_4.515748 15987..16145 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1422.t1.intron1Gcaud1422.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_653_length_20221_cov_4.515748 15898..15986 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1422.t1.start1Gcaud1422.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_653_length_20221_cov_4.515748 16143..16145 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1422.t1 ID=Gcaud1422.t1|Name=Gcaud1422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=76bp
MGEGPRFPYPKEVWSPGGGWWPYPKKWRANTAMTLALIIALSIPVAIVSE
KKMITVGQPNRRIPWRPGLKPADEE*
back to top

spliced messenger RNA

>Gcaud1422.t1 ID=Gcaud1422.t1|Name=Gcaud1422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:15829..16145- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGAAGGTCCACGTTTTCCGTACCCTAAGGAGGTTTGGTCTCCGGG
AGGTGGTTGGTGGCCATATCCGAAGAAGTGGCGTGCCAATACCGCCATGA
CTCTGGCACTAATCATCGCCCTCTCCATCCCTGTGGCTATAGTATCAGAG
AAGAAGATGATAACTGTGGGTCAACCGAATCGACGCATTCCCTGGAGACC
AGGATTGAAGCCAGCCGACGAAGAGTAA
back to top

protein sequence of Gcaud1422.t1

>Gcaud1422.t1 ID=Gcaud1422.t1|Name=Gcaud1422.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=76bp
MGEGPRFPYPKEVWSPGGGWWPYPKKWRANTAMTLALIIALSIPVAIVSE
KKMITVGQPNRRIPWRPGLKPADEE*
back to top

mRNA from alignment at NODE_653_length_20221_cov_4.515748:15829..16145-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1422.t1 ID=Gcaud1422.t1|Name=Gcaud1422.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=317bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:15829..16145- (Gracilaria caudata M_176_S67 male)
ATGGGTGAAGGTCCACGTTTTCCGTACCCTAAGGAGGTTTGGTCTCCGGG
AGGTGGTTGGTGGCCATATCCGAAGAAGTGGCGTGCCAATACCGCCATGA
CTCTGGCACTAATCATCGCCCTCTCCATCCCTGTGGCTATAGTATCAGAG
AAGAAGATGGTAAGCGATCGCGTTTTCCTGTTTTCACGTGTCCATCATGC
TTCAAGATGATGACCTAACAGATGTATGTCGCTTGCGCAACATTGAAGAT
AACTGTGGGTCAACCGAATCGACGCATTCCCTGGAGACCAGGATTGAAGC
CAGCCGACGAAGAGTAA
back to top

Coding sequence (CDS) from alignment at NODE_653_length_20221_cov_4.515748:15829..16145-

>Gcaud1422.t1 ID=Gcaud1422.t1|Name=Gcaud1422.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=228bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:15829..16145- (Gracilaria caudata M_176_S67 male)
ATGGGTGAAGGTCCACGTTTTCCGTACCCTAAGGAGGTTTGGTCTCCGGG
AGGTGGTTGGTGGCCATATCCGAAGAAGTGGCGTGCCAATACCGCCATGA
CTCTGGCACTAATCATCGCCCTCTCCATCCCTGTGGCTATAGTATCAGAG
AAGAAGATGATAACTGTGGGTCAACCGAATCGACGCATTCCCTGGAGACC
AGGATTGAAGCCAGCCGACGAAGAGTAA
back to top