Gcaud1320.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1320.t1
Unique Name	Gcaud1320.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_371_length_28318_cov_4.596486	contig	NODE_371_length_28318_cov_4.596486:19201..20277 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109478.XP_005866228.1
Preferred name	TEP1
PFAMs	DUF4062,NACHT,TEP1_N,TROVE,WD40
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11127
GOs	GO:0000722,GO:0000723,GO:0000781,GO:0002039,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005694,GO:0005697,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006312,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016363,GO:0018130,GO:0019438,GO:0019899,GO:0030532,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0051276,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071011,GO:0071013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0097525,GO:0098687,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990904
Evalue	3.95e-06
EggNOG OGs	COG2319@1\|root,KOG4155@1\|root,KOG3602@2759\|Eukaryota,KOG4155@2759\|Eukaryota,38BD6@33154\|Opisthokonta,3BAND@33208\|Metazoa,3CVWB@33213\|Bilateria,482I8@7711\|Chordata,48V62@7742\|Vertebrata,3JAAN@40674\|Mammalia,4KVFI@9397\|Chiroptera
Description	Telomerase protein component 1
COG category	S
BRITE	ko00000,ko03032

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1320	Gcaud1320	Gracilaria caudata M_176_S67 male	gene	NODE_371_length_28318_cov_4.596486 19201..20277 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1320.t1.start1	Gcaud1320.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_371_length_28318_cov_4.596486 19201..19203 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1320.t1.CDS1	Gcaud1320.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 19201..20277 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1320.t1.exon1	Gcaud1320.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 19201..20277 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1320.t1.stop1	Gcaud1320.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_371_length_28318_cov_4.596486 20275..20277 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1320.t1	Gcaud1320.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_371_length_28318_cov_4.596486 19201..20277 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_371_length_28318_cov_4.596486:19201..20277+
coding sequence from alignment at NODE_371_length_28318_cov_4.596486:19201..20277+

mRNA sequence

>Gcaud1320.t1 ID=Gcaud1320.t1|Name=Gcaud1320.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=359bp
MNGTNRKQSALWTVGRASRGLLRCSDRHRDLIIAGTALTNSENSIHILTV
DCETISLHPLNVLTAPSEVWSHEVVTKDSNLNIIAATRKAYRSAVEVWSL
TGADDLSPRISRSPSWDASGYDAHPIRNTSFMAIDGDILKVLKNPGATSS
YMALTKTGATFLSVGTSLQISLSLQLDRAKFPVKSENDIFVDAGWIDENT
SYVASTRCLAACDSRTGEFELITDTEKSINTPTSVQDGVHVAPYPTRVST
SLSMDGTRLIVGGEDGSLRAYDMKKPDVVWQLPHAHAQWVSTLCETRAGE
FLSGGMDGVVRCWTNDGQPIATFPQHDDIVTNATSFDSAFVTVSYDGRLA
MNELPIVT*

spliced messenger RNA

>Gcaud1320.t1 ID=Gcaud1320.t1|Name=Gcaud1320.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:19201..20277+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGGAACCAATCGAAAACAATCTGCTCTTTGGACTGTTGGCCGAGC
TTCACGCGGGTTGCTGCGGTGCTCTGACAGGCACAGAGATCTCATTATTG
CTGGCACCGCGCTCACCAACTCGGAGAATTCCATCCATATTCTTACCGTG
GATTGCGAAACCATCTCCCTACACCCGTTGAACGTCCTCACCGCACCTTC
TGAGGTTTGGTCGCACGAGGTAGTCACCAAGGACTCCAACCTGAATATTA
TCGCTGCAACGCGTAAAGCGTATAGATCTGCAGTTGAGGTGTGGTCTTTG
ACGGGTGCTGATGATTTATCACCACGCATTTCGAGATCACCGTCATGGGA
CGCCAGTGGCTACGACGCACATCCCATCCGCAATACGTCGTTTATGGCAA
TTGATGGTGATATACTTAAGGTTCTGAAGAACCCCGGCGCCACTTCGTCC
TACATGGCATTGACTAAGACGGGTGCAACGTTCTTGTCAGTTGGTACCTC
TCTGCAGATCAGTCTTTCTCTGCAGCTTGACCGTGCAAAGTTTCCAGTTA
AGTCTGAAAATGATATCTTTGTTGACGCCGGGTGGATAGACGAGAACACC
TCTTATGTGGCGTCCACTCGATGCCTCGCGGCTTGCGATTCGAGAACTGG
AGAATTTGAGCTCATCACTGACACAGAAAAGTCAATCAATACACCCACTT
CTGTCCAAGATGGTGTGCATGTTGCCCCTTATCCTACGCGAGTGTCAACA
TCGTTATCGATGGATGGCACAAGATTAATTGTGGGAGGAGAGGATGGGTC
GCTCAGAGCCTACGATATGAAGAAACCCGATGTTGTGTGGCAGTTACCTC
ACGCACATGCCCAATGGGTTTCCACTTTGTGTGAGACAAGAGCTGGAGAA
TTCCTTAGCGGTGGAATGGACGGCGTTGTGCGCTGTTGGACAAATGATGG
ACAACCTATAGCCACATTCCCGCAGCATGATGATATTGTAACTAATGCCA
CCAGTTTTGACTCTGCGTTTGTAACGGTGTCGTACGACGGAAGACTTGCC
ATGAATGAGCTACCGATTGTTACGTAA

protein sequence of Gcaud1320.t1

>Gcaud1320.t1 ID=Gcaud1320.t1|Name=Gcaud1320.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=359bp
MNGTNRKQSALWTVGRASRGLLRCSDRHRDLIIAGTALTNSENSIHILTV
DCETISLHPLNVLTAPSEVWSHEVVTKDSNLNIIAATRKAYRSAVEVWSL
TGADDLSPRISRSPSWDASGYDAHPIRNTSFMAIDGDILKVLKNPGATSS
YMALTKTGATFLSVGTSLQISLSLQLDRAKFPVKSENDIFVDAGWIDENT
SYVASTRCLAACDSRTGEFELITDTEKSINTPTSVQDGVHVAPYPTRVST
SLSMDGTRLIVGGEDGSLRAYDMKKPDVVWQLPHAHAQWVSTLCETRAGE
FLSGGMDGVVRCWTNDGQPIATFPQHDDIVTNATSFDSAFVTVSYDGRLA
MNELPIVT*

mRNA from alignment at NODE_371_length_28318_cov_4.596486:19201..20277+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1320.t1 ID=Gcaud1320.t1|Name=Gcaud1320.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:19201..20277+ (Gracilaria caudata M_176_S67 male)
ATGAATGGAACCAATCGAAAACAATCTGCTCTTTGGACTGTTGGCCGAGC
TTCACGCGGGTTGCTGCGGTGCTCTGACAGGCACAGAGATCTCATTATTG
CTGGCACCGCGCTCACCAACTCGGAGAATTCCATCCATATTCTTACCGTG
GATTGCGAAACCATCTCCCTACACCCGTTGAACGTCCTCACCGCACCTTC
TGAGGTTTGGTCGCACGAGGTAGTCACCAAGGACTCCAACCTGAATATTA
TCGCTGCAACGCGTAAAGCGTATAGATCTGCAGTTGAGGTGTGGTCTTTG
ACGGGTGCTGATGATTTATCACCACGCATTTCGAGATCACCGTCATGGGA
CGCCAGTGGCTACGACGCACATCCCATCCGCAATACGTCGTTTATGGCAA
TTGATGGTGATATACTTAAGGTTCTGAAGAACCCCGGCGCCACTTCGTCC
TACATGGCATTGACTAAGACGGGTGCAACGTTCTTGTCAGTTGGTACCTC
TCTGCAGATCAGTCTTTCTCTGCAGCTTGACCGTGCAAAGTTTCCAGTTA
AGTCTGAAAATGATATCTTTGTTGACGCCGGGTGGATAGACGAGAACACC
TCTTATGTGGCGTCCACTCGATGCCTCGCGGCTTGCGATTCGAGAACTGG
AGAATTTGAGCTCATCACTGACACAGAAAAGTCAATCAATACACCCACTT
CTGTCCAAGATGGTGTGCATGTTGCCCCTTATCCTACGCGAGTGTCAACA
TCGTTATCGATGGATGGCACAAGATTAATTGTGGGAGGAGAGGATGGGTC
GCTCAGAGCCTACGATATGAAGAAACCCGATGTTGTGTGGCAGTTACCTC
ACGCACATGCCCAATGGGTTTCCACTTTGTGTGAGACAAGAGCTGGAGAA
TTCCTTAGCGGTGGAATGGACGGCGTTGTGCGCTGTTGGACAAATGATGG
ACAACCTATAGCCACATTCCCGCAGCATGATGATATTGTAACTAATGCCA
CCAGTTTTGACTCTGCGTTTGTAACGGTGTCGTACGACGGAAGACTTGCC
ATGAATGAGCTACCGATTGTTACGTAA

Coding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:19201..20277+

>Gcaud1320.t1 ID=Gcaud1320.t1|Name=Gcaud1320.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1077bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:19201..20277+ (Gracilaria caudata M_176_S67 male)
ATGAATGGAACCAATCGAAAACAATCTGCTCTTTGGACTGTTGGCCGAGC
TTCACGCGGGTTGCTGCGGTGCTCTGACAGGCACAGAGATCTCATTATTG
CTGGCACCGCGCTCACCAACTCGGAGAATTCCATCCATATTCTTACCGTG
GATTGCGAAACCATCTCCCTACACCCGTTGAACGTCCTCACCGCACCTTC
TGAGGTTTGGTCGCACGAGGTAGTCACCAAGGACTCCAACCTGAATATTA
TCGCTGCAACGCGTAAAGCGTATAGATCTGCAGTTGAGGTGTGGTCTTTG
ACGGGTGCTGATGATTTATCACCACGCATTTCGAGATCACCGTCATGGGA
CGCCAGTGGCTACGACGCACATCCCATCCGCAATACGTCGTTTATGGCAA
TTGATGGTGATATACTTAAGGTTCTGAAGAACCCCGGCGCCACTTCGTCC
TACATGGCATTGACTAAGACGGGTGCAACGTTCTTGTCAGTTGGTACCTC
TCTGCAGATCAGTCTTTCTCTGCAGCTTGACCGTGCAAAGTTTCCAGTTA
AGTCTGAAAATGATATCTTTGTTGACGCCGGGTGGATAGACGAGAACACC
TCTTATGTGGCGTCCACTCGATGCCTCGCGGCTTGCGATTCGAGAACTGG
AGAATTTGAGCTCATCACTGACACAGAAAAGTCAATCAATACACCCACTT
CTGTCCAAGATGGTGTGCATGTTGCCCCTTATCCTACGCGAGTGTCAACA
TCGTTATCGATGGATGGCACAAGATTAATTGTGGGAGGAGAGGATGGGTC
GCTCAGAGCCTACGATATGAAGAAACCCGATGTTGTGTGGCAGTTACCTC
ACGCACATGCCCAATGGGTTTCCACTTTGTGTGAGACAAGAGCTGGAGAA
TTCCTTAGCGGTGGAATGGACGGCGTTGTGCGCTGTTGGACAAATGATGG
ACAACCTATAGCCACATTCCCGCAGCATGATGATATTGTAACTAATGCCA
CCAGTTTTGACTCTGCGTTTGTAACGGTGTCGTACGACGGAAGACTTGCC
ATGAATGAGCTACCGATTGTTACGTAA