Gcaud1319.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1319.t1
Unique Name	Gcaud1319.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	508

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_371_length_28318_cov_4.596486	contig	NODE_371_length_28318_cov_4.596486:16981..18594 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703819.1
PFAMs	Glyco_transf_90
Max annot lvl	2759\|Eukaryota
Evalue	1.91e-21
EggNOG OGs	KOG2458@1\|root,KOG2458@2759\|Eukaryota
Description	glucosyltransferase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1319	Gcaud1319	Gracilaria caudata M_176_S67 male	gene	NODE_371_length_28318_cov_4.596486 16981..18594 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1319.t1	Gcaud1319.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_371_length_28318_cov_4.596486 16981..18594 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1319.t1.start1	Gcaud1319.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_371_length_28318_cov_4.596486 16981..16983 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1319.t1.CDS1	Gcaud1319.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 16981..18193 +
Gcaud1319.t1.CDS2	Gcaud1319.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_371_length_28318_cov_4.596486 18284..18594 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1319.t1.exon1	Gcaud1319.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 16981..18193 +
Gcaud1319.t1.exon2	Gcaud1319.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_371_length_28318_cov_4.596486 18284..18594 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1319.t1.intron1	Gcaud1319.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_371_length_28318_cov_4.596486 18194..18283 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1319.t1.stop1	Gcaud1319.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_371_length_28318_cov_4.596486 18592..18594 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_371_length_28318_cov_4.596486:16981..18594+
coding sequence from alignment at NODE_371_length_28318_cov_4.596486:16981..18594+

mRNA sequence

>Gcaud1319.t1 ID=Gcaud1319.t1|Name=Gcaud1319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=508bp
MERPLLLRPKIVKYNRKQLTHSSSNANWVSNLRNYTDFKMSSSRNKRSSR
SRTTRWINSIILSISIVLFIATLVMRGQGLDASPQFPDFKLSSFSIPSAD
ASPIVNSSSTDTHSPTFVSREKSDERLSDSTSNSRVLDRRGVDEHLTTIR
QDWEGVVDSFLDGTSSSHFSARKIREHYEVNVNNVQDTCILVRILDGNVT
FTEDYHGKRHGRASSVKYIINKIVRQKGRSLPGATFMVMVTDGHKPKVAT
FGSARHWKNWRLMIPAPLGNERGVREGWGTPLEGWDEYIDRTVLSTHSNY
SWESKQGKALFRGALSMQTYKLGTCNDENDARCERATKWNEINRGVLYEK
TKKRRDLVDVGFTSLKQRANGDKKQLEGAPDVMRSMKFKDYQKYKYVLNV
GSNQDWAERLRSLLFLNSAIIHHKAESQEFFTPLMRPWVHYIPTSLQFED
LIENIEWAKRNDDFVRQLVRNQNAFADRYISERAIQQYWEVAIEKFAALQ
AQAAAEM*

spliced messenger RNA

>Gcaud1319.t1 ID=Gcaud1319.t1|Name=Gcaud1319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:16981..18594+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGACCACTGCTCCTCAGGCCCAAGATCGTTAAATACAACCGAAA
ACAGCTGACACATTCTTCATCCAACGCAAACTGGGTTTCAAACCTTCGCA
ACTATACAGATTTCAAAATGTCTTCTTCACGAAACAAGAGGTCTAGCAGG
TCTCGTACAACCCGTTGGATTAACAGTATTATTTTATCCATATCTATCGT
GCTGTTCATAGCAACTTTAGTTATGAGGGGACAAGGATTGGACGCATCAC
CGCAGTTTCCAGACTTCAAGCTATCTTCGTTTTCAATTCCATCCGCCGAT
GCTTCTCCTATTGTCAATAGCAGTAGCACCGACACCCATTCTCCAACGTT
TGTTTCTCGAGAAAAAAGTGATGAACGCCTTTCTGACTCGACCTCAAACT
CCAGGGTACTCGATAGACGTGGAGTTGATGAACACCTCACTACTATTCGA
CAGGATTGGGAGGGCGTGGTTGATTCGTTTCTGGATGGCACATCATCATC
ACACTTCTCCGCAAGGAAGATTCGGGAGCACTATGAGGTAAACGTAAACA
ACGTGCAAGATACCTGTATTCTCGTACGAATTCTTGACGGAAATGTTACA
TTCACTGAGGACTATCATGGAAAGCGTCATGGCCGAGCTTCCTCTGTTAA
ATATATTATTAACAAGATCGTTCGCCAGAAAGGACGCTCTTTGCCTGGTG
CCACATTTATGGTCATGGTTACTGATGGGCACAAACCGAAGGTAGCGACC
TTCGGTTCTGCGAGGCATTGGAAGAATTGGAGATTAATGATTCCCGCTCC
GCTTGGAAATGAAAGAGGAGTTCGTGAAGGCTGGGGTACCCCCCTTGAAG
GATGGGATGAGTATATTGATAGAACTGTGCTCTCTACACATTCCAACTAT
TCATGGGAATCCAAGCAAGGAAAAGCTTTGTTCCGTGGGGCTCTTTCCAT
GCAGACCTACAAATTAGGGACATGCAACGACGAAAATGATGCAAGATGCG
AACGAGCAACTAAATGGAATGAAATTAATAGAGGAGTGCTGTATGAAAAG
ACCAAAAAAAGACGGGACCTAGTGGATGTTGGATTCACGTCCTTGAAACA
AAGAGCAAACGGGGATAAAAAGCAACTTGAAGGGGCACCAGATGTTATGA
GGTCAATGAAGTTCAAAGACTATCAGAAATACAAATATGTGCTAAACGTC
GGGAGCAATCAAGATTGGGCGGAGAGGCTACGTTCTTTGCTTTTCCTTAA
CAGTGCGATTATACATCACAAAGCGGAATCACAAGAGTTCTTCACCCCTC
TAATGAGGCCATGGGTGCACTATATTCCTACAAGCCTACAATTCGAGGAT
CTTATTGAGAACATCGAGTGGGCGAAAAGGAACGACGATTTTGTGAGACA
GCTCGTGCGCAATCAAAACGCGTTTGCTGACCGATACATCTCAGAACGGG
CGATACAGCAGTACTGGGAAGTGGCCATAGAAAAATTCGCAGCTTTGCAA
GCCCAAGCTGCTGCTGAAATGTAA

protein sequence of Gcaud1319.t1

>Gcaud1319.t1 ID=Gcaud1319.t1|Name=Gcaud1319.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=508bp
MERPLLLRPKIVKYNRKQLTHSSSNANWVSNLRNYTDFKMSSSRNKRSSR
SRTTRWINSIILSISIVLFIATLVMRGQGLDASPQFPDFKLSSFSIPSAD
ASPIVNSSSTDTHSPTFVSREKSDERLSDSTSNSRVLDRRGVDEHLTTIR
QDWEGVVDSFLDGTSSSHFSARKIREHYEVNVNNVQDTCILVRILDGNVT
FTEDYHGKRHGRASSVKYIINKIVRQKGRSLPGATFMVMVTDGHKPKVAT
FGSARHWKNWRLMIPAPLGNERGVREGWGTPLEGWDEYIDRTVLSTHSNY
SWESKQGKALFRGALSMQTYKLGTCNDENDARCERATKWNEINRGVLYEK
TKKRRDLVDVGFTSLKQRANGDKKQLEGAPDVMRSMKFKDYQKYKYVLNV
GSNQDWAERLRSLLFLNSAIIHHKAESQEFFTPLMRPWVHYIPTSLQFED
LIENIEWAKRNDDFVRQLVRNQNAFADRYISERAIQQYWEVAIEKFAALQ
AQAAAEM*

mRNA from alignment at NODE_371_length_28318_cov_4.596486:16981..18594+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1319.t1 ID=Gcaud1319.t1|Name=Gcaud1319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:16981..18594+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGACCACTGCTCCTCAGGCCCAAGATCGTTAAATACAACCGAAA
ACAGCTGACACATTCTTCATCCAACGCAAACTGGGTTTCAAACCTTCGCA
ACTATACAGATTTCAAAATGTCTTCTTCACGAAACAAGAGGTCTAGCAGG
TCTCGTACAACCCGTTGGATTAACAGTATTATTTTATCCATATCTATCGT
GCTGTTCATAGCAACTTTAGTTATGAGGGGACAAGGATTGGACGCATCAC
CGCAGTTTCCAGACTTCAAGCTATCTTCGTTTTCAATTCCATCCGCCGAT
GCTTCTCCTATTGTCAATAGCAGTAGCACCGACACCCATTCTCCAACGTT
TGTTTCTCGAGAAAAAAGTGATGAACGCCTTTCTGACTCGACCTCAAACT
CCAGGGTACTCGATAGACGTGGAGTTGATGAACACCTCACTACTATTCGA
CAGGATTGGGAGGGCGTGGTTGATTCGTTTCTGGATGGCACATCATCATC
ACACTTCTCCGCAAGGAAGATTCGGGAGCACTATGAGGTAAACGTAAACA
ACGTGCAAGATACCTGTATTCTCGTACGAATTCTTGACGGAAATGTTACA
TTCACTGAGGACTATCATGGAAAGCGTCATGGCCGAGCTTCCTCTGTTAA
ATATATTATTAACAAGATCGTTCGCCAGAAAGGACGCTCTTTGCCTGGTG
CCACATTTATGGTCATGGTTACTGATGGGCACAAACCGAAGGTAGCGACC
TTCGGTTCTGCGAGGCATTGGAAGAATTGGAGATTAATGATTCCCGCTCC
GCTTGGAAATGAAAGAGGAGTTCGTGAAGGCTGGGGTACCCCCCTTGAAG
GATGGGATGAGTATATTGATAGAACTGTGCTCTCTACACATTCCAACTAT
TCATGGGAATCCAAGCAAGGAAAAGCTTTGTTCCGTGGGGCTCTTTCCAT
GCAGACCTACAAATTAGGGACATGCAACGACGAAAATGATGCAAGATGCG
AACGAGCAACTAAATGGAATGAAATTAATAGAGGAGTGCTGTATGAAAAG
ACCAAAAAAAGACGGGACCTAGTGGATGTTGGATTCACGTCCTTGAAACA
AAGAGCAAACGGGGATAAAAAGCAACTTGAAGGGGCACCAGATGTTATGA
GGTCAATGAAGTTCAAAGACTATCAGAAATACAAATATGTGCTAAACGTC
GGGAGCAATCAAGGTAAGTACCAATCGTAATTTGTTAAGCAGTACTTGCG
CTCATGTTCACGGAAAAGTCTTCTCTAACGTACTCGTGTCTTGTTGCTCA
CAGATTGGGCGGAGAGGCTACGTTCTTTGCTTTTCCTTAACAGTGCGATT
ATACATCACAAAGCGGAATCACAAGAGTTCTTCACCCCTCTAATGAGGCC
ATGGGTGCACTATATTCCTACAAGCCTACAATTCGAGGATCTTATTGAGA
ACATCGAGTGGGCGAAAAGGAACGACGATTTTGTGAGACAGCTCGTGCGC
AATCAAAACGCGTTTGCTGACCGATACATCTCAGAACGGGCGATACAGCA
GTACTGGGAAGTGGCCATAGAAAAATTCGCAGCTTTGCAAGCCCAAGCTG
CTGCTGAAATGTAA

Coding sequence (CDS) from alignment at NODE_371_length_28318_cov_4.596486:16981..18594+

>Gcaud1319.t1 ID=Gcaud1319.t1|Name=Gcaud1319.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1524bp|location=Sequence derived from alignment at NODE_371_length_28318_cov_4.596486:16981..18594+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGACCACTGCTCCTCAGGCCCAAGATCGTTAAATACAACCGAAA
ACAGCTGACACATTCTTCATCCAACGCAAACTGGGTTTCAAACCTTCGCA
ACTATACAGATTTCAAAATGTCTTCTTCACGAAACAAGAGGTCTAGCAGG
TCTCGTACAACCCGTTGGATTAACAGTATTATTTTATCCATATCTATCGT
GCTGTTCATAGCAACTTTAGTTATGAGGGGACAAGGATTGGACGCATCAC
CGCAGTTTCCAGACTTCAAGCTATCTTCGTTTTCAATTCCATCCGCCGAT
GCTTCTCCTATTGTCAATAGCAGTAGCACCGACACCCATTCTCCAACGTT
TGTTTCTCGAGAAAAAAGTGATGAACGCCTTTCTGACTCGACCTCAAACT
CCAGGGTACTCGATAGACGTGGAGTTGATGAACACCTCACTACTATTCGA
CAGGATTGGGAGGGCGTGGTTGATTCGTTTCTGGATGGCACATCATCATC
ACACTTCTCCGCAAGGAAGATTCGGGAGCACTATGAGGTAAACGTAAACA
ACGTGCAAGATACCTGTATTCTCGTACGAATTCTTGACGGAAATGTTACA
TTCACTGAGGACTATCATGGAAAGCGTCATGGCCGAGCTTCCTCTGTTAA
ATATATTATTAACAAGATCGTTCGCCAGAAAGGACGCTCTTTGCCTGGTG
CCACATTTATGGTCATGGTTACTGATGGGCACAAACCGAAGGTAGCGACC
TTCGGTTCTGCGAGGCATTGGAAGAATTGGAGATTAATGATTCCCGCTCC
GCTTGGAAATGAAAGAGGAGTTCGTGAAGGCTGGGGTACCCCCCTTGAAG
GATGGGATGAGTATATTGATAGAACTGTGCTCTCTACACATTCCAACTAT
TCATGGGAATCCAAGCAAGGAAAAGCTTTGTTCCGTGGGGCTCTTTCCAT
GCAGACCTACAAATTAGGGACATGCAACGACGAAAATGATGCAAGATGCG
AACGAGCAACTAAATGGAATGAAATTAATAGAGGAGTGCTGTATGAAAAG
ACCAAAAAAAGACGGGACCTAGTGGATGTTGGATTCACGTCCTTGAAACA
AAGAGCAAACGGGGATAAAAAGCAACTTGAAGGGGCACCAGATGTTATGA
GGTCAATGAAGTTCAAAGACTATCAGAAATACAAATATGTGCTAAACGTC
GGGAGCAATCAAGATTGGGCGGAGAGGCTACGTTCTTTGCTTTTCCTTAA
CAGTGCGATTATACATCACAAAGCGGAATCACAAGAGTTCTTCACCCCTC
TAATGAGGCCATGGGTGCACTATATTCCTACAAGCCTACAATTCGAGGAT
CTTATTGAGAACATCGAGTGGGCGAAAAGGAACGACGATTTTGTGAGACA
GCTCGTGCGCAATCAAAACGCGTTTGCTGACCGATACATCTCAGAACGGG
CGATACAGCAGTACTGGGAAGTGGCCATAGAAAAATTCGCAGCTTTGCAA
GCCCAAGCTGCTGCTGAAATGTAA