Gcaud1303.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1303.t1
Unique Name	Gcaud1303.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3626_length_3163_cov_4.695964	contig	NODE_3626_length_3163_cov_4.695964:1647..2526 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1303	Gcaud1303	Gracilaria caudata M_176_S67 male	gene	NODE_3626_length_3163_cov_4.695964 1647..2526 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1303.t1.CDS1	Gcaud1303.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3626_length_3163_cov_4.695964 1647..2526 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1303.t1.exon1	Gcaud1303.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3626_length_3163_cov_4.695964 1647..2526 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1303.t1.stop1	Gcaud1303.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3626_length_3163_cov_4.695964 2524..2526 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1303.t1	Gcaud1303.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3626_length_3163_cov_4.695964 1647..2526 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3626_length_3163_cov_4.695964:1647..2526+
coding sequence from alignment at NODE_3626_length_3163_cov_4.695964:1647..2526+

mRNA sequence

>Gcaud1303.t1 ID=Gcaud1303.t1|Name=Gcaud1303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=294bp
XLQQSLLSALDNKIKERQAAGSVRRSHRNLGKDDIKTLYSSELLSKTTTR
GFMTCIIVNMMMVTAFRKSELWALCMKDVTLMKRNGKEAWRVVGRIGCPD
GAPKTQGGGLSMVNVRPKEIFIFDLTISELKVNVFQDLRKYLAIVQSSRA
DEDNLLAGVNYNAVQRKSFFKKGNLGVNTIGKYLTDACRDLGIKGEGVFD
HVIVHGFRGIVVSQLYAAGFSDASVALRTGHRDFSSLHAYHILSGNLGEQ
QKAAIFGKSVASAAPKRRSRSRRRLMKPTRRTTTEKQPVTMML*

spliced messenger RNA

>Gcaud1303.t1 ID=Gcaud1303.t1|Name=Gcaud1303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=880bp|location=Sequence derived from alignment at NODE_3626_length_3163_cov_4.695964:1647..2526+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ACTCCAACAAAGCCTTCTTTCCGCGTTGGATAACAAGATTAAGGAAAGGC
AGGCAGCTGGGTCAGTGCGAAGAAGTCATAGGAACCTTGGGAAAGATGAC
ATCAAAACGCTCTATTCTTCGGAACTACTCTCGAAAACCACGACTAGGGG
TTTTATGACTTGTATCATAGTGAACATGATGATGGTGACAGCTTTCCGAA
AGAGTGAGTTGTGGGCTCTTTGCATGAAGGATGTTACTCTTATGAAGCGA
AACGGCAAAGAAGCTTGGAGAGTTGTGGGAAGAATCGGCTGTCCTGACGG
AGCTCCCAAGACGCAAGGGGGAGGGCTTTCCATGGTTAATGTAAGGCCCA
AAGAGATTTTTATCTTTGATCTCACTATATCTGAGTTGAAGGTTAACGTA
TTTCAAGACTTGCGCAAGTACCTGGCCATTGTCCAATCAAGTCGTGCTGA
TGAAGACAACCTTTTGGCTGGGGTTAACTACAATGCGGTACAGAGGAAGT
CGTTTTTTAAGAAAGGTAATCTCGGTGTCAATACTATTGGAAAGTATCTA
ACTGATGCATGCCGTGATCTTGGAATCAAGGGTGAAGGTGTTTTTGACCA
TGTAATTGTCCATGGCTTTCGAGGTATAGTAGTAAGCCAGCTTTACGCTG
CCGGTTTTTCAGACGCCAGTGTGGCGCTACGTACTGGACATCGAGACTTC
AGCTCTCTTCATGCCTATCACATTTTGAGTGGAAATCTGGGTGAGCAGCA
AAAAGCTGCAATATTTGGAAAAAGTGTGGCTTCTGCTGCACCAAAGAGGC
GCTCTCGCAGTCGGAGAAGACTTATGAAGCCGACAAGGAGAACAACGACC
GAGAAGCAACCAGTAACGATGATGCTATGA

protein sequence of Gcaud1303.t1

>Gcaud1303.t1 ID=Gcaud1303.t1|Name=Gcaud1303.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=294bp
XLQQSLLSALDNKIKERQAAGSVRRSHRNLGKDDIKTLYSSELLSKTTTR
GFMTCIIVNMMMVTAFRKSELWALCMKDVTLMKRNGKEAWRVVGRIGCPD
GAPKTQGGGLSMVNVRPKEIFIFDLTISELKVNVFQDLRKYLAIVQSSRA
DEDNLLAGVNYNAVQRKSFFKKGNLGVNTIGKYLTDACRDLGIKGEGVFD
HVIVHGFRGIVVSQLYAAGFSDASVALRTGHRDFSSLHAYHILSGNLGEQ
QKAAIFGKSVASAAPKRRSRSRRRLMKPTRRTTTEKQPVTMML*

mRNA from alignment at NODE_3626_length_3163_cov_4.695964:1647..2526+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1303.t1 ID=Gcaud1303.t1|Name=Gcaud1303.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=880bp|location=Sequence derived from alignment at NODE_3626_length_3163_cov_4.695964:1647..2526+ (Gracilaria caudata M_176_S67 male)
ACTCCAACAAAGCCTTCTTTCCGCGTTGGATAACAAGATTAAGGAAAGGC
AGGCAGCTGGGTCAGTGCGAAGAAGTCATAGGAACCTTGGGAAAGATGAC
ATCAAAACGCTCTATTCTTCGGAACTACTCTCGAAAACCACGACTAGGGG
TTTTATGACTTGTATCATAGTGAACATGATGATGGTGACAGCTTTCCGAA
AGAGTGAGTTGTGGGCTCTTTGCATGAAGGATGTTACTCTTATGAAGCGA
AACGGCAAAGAAGCTTGGAGAGTTGTGGGAAGAATCGGCTGTCCTGACGG
AGCTCCCAAGACGCAAGGGGGAGGGCTTTCCATGGTTAATGTAAGGCCCA
AAGAGATTTTTATCTTTGATCTCACTATATCTGAGTTGAAGGTTAACGTA
TTTCAAGACTTGCGCAAGTACCTGGCCATTGTCCAATCAAGTCGTGCTGA
TGAAGACAACCTTTTGGCTGGGGTTAACTACAATGCGGTACAGAGGAAGT
CGTTTTTTAAGAAAGGTAATCTCGGTGTCAATACTATTGGAAAGTATCTA
ACTGATGCATGCCGTGATCTTGGAATCAAGGGTGAAGGTGTTTTTGACCA
TGTAATTGTCCATGGCTTTCGAGGTATAGTAGTAAGCCAGCTTTACGCTG
CCGGTTTTTCAGACGCCAGTGTGGCGCTACGTACTGGACATCGAGACTTC
AGCTCTCTTCATGCCTATCACATTTTGAGTGGAAATCTGGGTGAGCAGCA
AAAAGCTGCAATATTTGGAAAAAGTGTGGCTTCTGCTGCACCAAAGAGGC
GCTCTCGCAGTCGGAGAAGACTTATGAAGCCGACAAGGAGAACAACGACC
GAGAAGCAACCAGTAACGATGATGCTATGA

Coding sequence (CDS) from alignment at NODE_3626_length_3163_cov_4.695964:1647..2526+

>Gcaud1303.t1 ID=Gcaud1303.t1|Name=Gcaud1303.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=880bp|location=Sequence derived from alignment at NODE_3626_length_3163_cov_4.695964:1647..2526+ (Gracilaria caudata M_176_S67 male)
ACTCCAACAAAGCCTTCTTTCCGCGTTGGATAACAAGATTAAGGAAAGGC
AGGCAGCTGGGTCAGTGCGAAGAAGTCATAGGAACCTTGGGAAAGATGAC
ATCAAAACGCTCTATTCTTCGGAACTACTCTCGAAAACCACGACTAGGGG
TTTTATGACTTGTATCATAGTGAACATGATGATGGTGACAGCTTTCCGAA
AGAGTGAGTTGTGGGCTCTTTGCATGAAGGATGTTACTCTTATGAAGCGA
AACGGCAAAGAAGCTTGGAGAGTTGTGGGAAGAATCGGCTGTCCTGACGG
AGCTCCCAAGACGCAAGGGGGAGGGCTTTCCATGGTTAATGTAAGGCCCA
AAGAGATTTTTATCTTTGATCTCACTATATCTGAGTTGAAGGTTAACGTA
TTTCAAGACTTGCGCAAGTACCTGGCCATTGTCCAATCAAGTCGTGCTGA
TGAAGACAACCTTTTGGCTGGGGTTAACTACAATGCGGTACAGAGGAAGT
CGTTTTTTAAGAAAGGTAATCTCGGTGTCAATACTATTGGAAAGTATCTA
ACTGATGCATGCCGTGATCTTGGAATCAAGGGTGAAGGTGTTTTTGACCA
TGTAATTGTCCATGGCTTTCGAGGTATAGTAGTAAGCCAGCTTTACGCTG
CCGGTTTTTCAGACGCCAGTGTGGCGCTACGTACTGGACATCGAGACTTC
AGCTCTCTTCATGCCTATCACATTTTGAGTGGAAATCTGGGTGAGCAGCA
AAAAGCTGCAATATTTGGAAAAAGTGTGGCTTCTGCTGCACCAAAGAGGC
GCTCTCGCAGTCGGAGAAGACTTATGAAGCCGACAAGGAGAACAACGACC
GAGAAGCAACCAGTAACGATGATGCTATGA