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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1270.t1.stop1 | Gcaud1270.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_413_length_26343_cov_4.745848 8901..8903 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1270.t1.start1 | Gcaud1270.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_413_length_26343_cov_4.745848 11427..11429 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1270.t1 ID=Gcaud1270.t1|Name=Gcaud1270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=83bp
MITLTFLHPNVFNVVKYVVMSLTISLAADILVDAIYAYNTDRILVKRGWV
EPDSSSIRLRCRRGCGGGTQRLGGSPTTSLQL* back to topspliced messenger RNA >Gcaud1270.t1 ID=Gcaud1270.t1|Name=Gcaud1270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=249bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:8901..11429- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGATCACTTTGACTTTCCTTCATCCGAACGTGTTTAACGTGGTCAAGTA
TGTGGTTATGTCGCTCACCATCAGTTTGGCCGCAGACATCCTCGTTGATG
CCATTTACGCCTACAATACAGACCGTATTCTTGTCAAACGAGGATGGGTT
GAACCAGACAGCTCTTCGATTCGATTGCGTTGCCGACGAGGATGTGGTGG
CGGCACGCAGCGCTTAGGCGGTTCCCCGACGACTTCCCTTCAACTCTAG back to topprotein sequence of Gcaud1270.t1 >Gcaud1270.t1 ID=Gcaud1270.t1|Name=Gcaud1270.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=83bp
MITLTFLHPNVFNVVKYVVMSLTISLAADILVDAIYAYNTDRILVKRGWV
EPDSSSIRLRCRRGCGGGTQRLGGSPTTSLQL* back to topmRNA from alignment at NODE_413_length_26343_cov_4.745848:8901..11429- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1270.t1 ID=Gcaud1270.t1|Name=Gcaud1270.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2529bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:8901..11429- (Gracilaria caudata M_176_S67 male)
ATGATCACTTTGACTTTCCTTCATCCGAACGTGTTTAACGTGGTCAAGTA
TGTGGTTATGTCGCTCACCATCAGTTTGGCCGCAGACATCCTCGTTGATG
CCATTTACGCCTACAATACAGACCGTATTCTTGTCAAACGAGGATGGGTT
GAACCAGACAGCTCTTCGATTCGATTGCGTTGCCGACGAGGAGTAAGGTT
CAGGAAACCGACGGGAAGATGGGTTTTGTTTCTCACGGTTGCAATGGCAT
GGATTTTGGAAATAGCTCTTGAGTTCTCCACCAGTGCCGAATCTGTATGG
ATAACAAGCACACACACATTTCGTCTGTCCAACCAAGCTACTGATGTGAG
CGAATTGCTGAGTGTTGGTCCCAGTTCGTTACTGAAAATGCGTTCCGCCT
TAGGACGAGTGGAAAGAACATGCTATGACATCCAACGAATGACATATGTC
CCTGTTTGGTTCAACATGACGGGCACGAATCAGCTTACTGCTCTTGGGGA
ATCGGCCAAATGCTTTCAGAACTTTACAGAGCATGTGAATGCCACTGAGG
CAATAAAAAGTTCGAGTTTCAAGGCGTCTGACGTTGTTGCGATGAACATG
TGGAATGAATCGCAGGTTGTGGTTGGAAAAGACGTGCAGAACATTGAAGC
AACGTTTGCTCTTTCGGAAGTGGGCGATGTAAGAATTGGAGCCAGCGAGG
AGTATAGCTTTGTTGCTGTGAACTTCAGCATGTCGTACTTCGTGAGGGAC
GGTCAAAGAATACTGACTAACAAGAGTGAACAGGAACAACCCAGAATCTT
CTGGGTGGGAAACTACACGACCGAGAGCGGCACGACTGTTGAATGCTTAT
CAAGGATGCGATGGAGAGAGGACAGGGACACAGGAGAGTTGTCGTGGAAC
CTGGTGGACACGGAGGTGTGCTTGGTACCCATAGCAGATGGAAGAAAGGT
GATAGCGTTATTTGACGAGAACGTAGACGGGGCTGATGGGTTTCAATTGC
TGATGTCTGTGGCGGTGGAGGGAGTGAGGAGCTTCTTTGATCTGGAGCTG
CTTCGAATGCTACCGTGGATGGTAGGGAACAACGATGGCGAGTATACATT
TCGAGAGCTGGCTACGCTGACGGTGATATCTGGCGGCATGGTTCAAGGGA
TTGTTGTGGACGGGCACCGCGACGTGACGATGGAAGTCGGCGACCGACAA
GTAACGGCGCCGACGGTGAGCGTGTGGGGCTTAGCTCTTCTGGTTACGAG
CACCATTGCGATCGTGGCGTTCAAGCTGCTTGTCGGACGTCAGCGACAGC
GCATGCACATCAGCGGCAACGTGAGCACTGCGAGAGGGGTGGCTGAGCAT
TGGCTCGAACGAAATGAGCCATTGGACGACGGCGGCAGCGAGAAAGACGC
TCGAAGGCGTGTGGTGTTGGTGCTGGAGAAGAACTTCGCGGGAACGAAGA
AAAACGTGTTGAACGTGGCCACAAGAAAGAGCGTAGAAATGGTTAATGAG
GACGCTTCGGACCCCTGAGCTCCCCTGAGAGACACCAGGAAGTCATCTTT
CATGGGGGAAAGATGTCCCAGTCCCCCCTACATGCTTAAGGACAAGAATA
TGAACGCTGACCACCATGCTAAACTATCCACCGGAATGGAATTCTTTCCT
GCTTCAAAGACACCGCTCATGAGCCTCATAGCCGGAAACTGAACTTGCGT
CTATTTGCAGTTTAGCCTTCGAACAGTTAGTTTGCGAGGCTTGTTGCCCT
GGTTTTTTCATTTCAACCCCTGAGTGATATAACATCGGCCAAGTGGAATA
CCCTTGTAGTCTCAGCGTGTGCCGAACTGCCAGCTGATTCGCGGACTGTA
ACAGTAGAAATGGGGAGAAAGCATTGTGCCAATGTCATGCTCTGAGATAT
TCAAAAAGTTTAATAACCCTGTTCCGCCTTTCAGAGGTGACGTCACACTC
AACCCAACAGCAAGCCTTTTGTATTGTTAAATATTTCAATCACGGGAGTG
GGCAACACTCTATTACAAGGGTAGAAGCATGGCCGACAGACGCGGTAATG
TATACTGCTTGACTGGCTATCCATACAAACCTCTGAACACAATCCTGTCA
GACTAGCAGTTAAAGTGATGAGGAAGACTCATGCCTTTCCCTTTGTTGTT
TTCATATGAACCACCATTTCTCGAGCAGTGTTCGAAAACAAGACATAGTC
GGGGTACCAACCCACGAAGCGAAGTGAAATCAAAAGGCGAAAATTTGCCG
CAGGCTCATGGTTGCTCTTGCGAGAACAACAGCCATTTTTCACCACAAAA
GGAACGGGCCCTGTGAGCCTGGCTCTACATGCGCACAAGCAGTAAAACGC
AGGTGTGCAAACATGGAGCAATTGCTACACTTCACGCAATGAGTGTGGTG
GCGGCACGCAGCGCTTAGGCGGTTCCCCGACGACTTCCCGTACGTGTTTT
CTCAAGCTGAGGCCAATTTTCACGCCGAGAAGATCGGCACAGTCTAACCT
TACGTTTCGCGTACCAAGTTCAACTCTAG back to topCoding sequence (CDS) from alignment at NODE_413_length_26343_cov_4.745848:8901..11429- >Gcaud1270.t1 ID=Gcaud1270.t1|Name=Gcaud1270.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=249bp|location=Sequence derived from alignment at NODE_413_length_26343_cov_4.745848:8901..11429- (Gracilaria caudata M_176_S67 male)
ATGATCACTTTGACTTTCCTTCATCCGAACGTGTTTAACGTGGTCAAGTA
TGTGGTTATGTCGCTCACCATCAGTTTGGCCGCAGACATCCTCGTTGATG
CCATTTACGCCTACAATACAGACCGTATTCTTGTCAAACGAGGATGGGTT
GAACCAGACAGCTCTTCGATTCGATTGCGTTGCCGACGAGGATGTGGTGG
CGGCACGCAGCGCTTAGGCGGTTCCCCGACGACTTCCCTTCAACTCTAG back to top
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