Gcaud1245.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1245.t1
Unique Name	Gcaud1245.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	631

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_627_length_20665_cov_4.535384	contig	NODE_627_length_20665_cov_4.535384:11037..12929 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1245	Gcaud1245	Gracilaria caudata M_176_S67 male	gene	NODE_627_length_20665_cov_4.535384 11037..12929 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1245.t1.stop1	Gcaud1245.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_627_length_20665_cov_4.535384 11037..11039 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1245.t1.CDS1	Gcaud1245.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_627_length_20665_cov_4.535384 11037..12929 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1245.t1.exon1	Gcaud1245.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_627_length_20665_cov_4.535384 11037..12929 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1245.t1.start1	Gcaud1245.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_627_length_20665_cov_4.535384 12927..12929 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1245.t1	Gcaud1245.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_627_length_20665_cov_4.535384 11037..12929 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_627_length_20665_cov_4.535384:11037..12929-
coding sequence from alignment at NODE_627_length_20665_cov_4.535384:11037..12929-

mRNA sequence

>Gcaud1245.t1 ID=Gcaud1245.t1|Name=Gcaud1245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=631bp
MAANHEDPVEQARALEILVQRDNDINAMIRLGCLLLYNDKLLSQRARGVQ
MLERVIKQSHNGLAMYCLACFLWKCDDRTDQRRAFLLFERSLKEKEQPDV
LIRLSHCYLFGRGVAKDANLAVQMAERAFKHTKNADVMGNLAWTLIQAPD
YRTERKRAVALYKKAIHLSSSAEAMADMMNDLGLFYHNGNDNLRKAPKRA
SKWYKRAIKTYKYPSAMYNLAMLLLEEDPGAGDVQRAIQLLEDAMEREQQ
QDELTILKLADVYLEHEINAERAIQLYETAVLRFNSSKGRSNLLGLWTKG
TELKGDVGLLDASHIYNFCWRDTMRNSHRGSFVTTAQMLWTGVDHVEANQ
KKAMELLASKNWVTHDCFYLMLRHDLSTHPGGTKAARRLMKKINDNIDKC
DIGNINSIVISESDGYDDKLLALESFRAQTTMRSSLHEIVWLAPYLRMGR
HNLPFHGHPDCVTNPLRMFTLWVSVASLNLASLLLEIEGKQQEAMAILED
LMETNVRLIARLNLAYVLIKGITPDSNRTRGMELLADAVKETNDVSARAM
LADALSERPDSDADDVERGWKLWRSVEEDEKDEDELRKIRRLISVRSTEK
WKTLACQQQEHTTVKSSVTARDDDSLSCST*

spliced messenger RNA

>Gcaud1245.t1 ID=Gcaud1245.t1|Name=Gcaud1245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1893bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:11037..12929- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCAACCACGAAGACCCGGTCGAGCAGGCACGTGCTCTGGAAAT
TTTGGTACAGCGAGACAATGACATCAACGCAATGATACGCTTGGGTTGTT
TGTTACTCTACAACGACAAGCTTCTCTCACAGCGAGCTCGAGGCGTTCAA
ATGTTGGAACGAGTCATTAAACAGTCACACAATGGGCTTGCTATGTATTG
TCTGGCTTGCTTTCTCTGGAAGTGCGACGACCGAACAGATCAACGTCGCG
CCTTTTTGCTTTTCGAACGTTCGTTGAAAGAGAAGGAGCAACCTGATGTG
CTTATTCGACTATCGCACTGCTATCTTTTTGGCAGAGGGGTTGCGAAAGA
TGCGAACCTTGCCGTGCAAATGGCAGAACGCGCCTTTAAGCATACGAAAA
ATGCTGATGTCATGGGCAACTTAGCCTGGACCTTGATCCAAGCTCCGGAC
TATCGCACGGAGAGGAAACGCGCCGTCGCACTGTACAAGAAGGCCATACA
TCTTTCTTCAAGTGCCGAAGCAATGGCTGACATGATGAACGACTTGGGTC
TCTTCTATCACAATGGTAACGACAACCTCAGAAAAGCACCTAAGAGAGCG
TCCAAGTGGTATAAGCGGGCGATAAAAACTTACAAATATCCTTCAGCAAT
GTATAACTTGGCCATGCTTCTTCTAGAGGAAGATCCCGGTGCCGGAGATG
TCCAAAGAGCAATTCAGTTGCTAGAAGATGCTATGGAACGAGAACAACAA
CAAGATGAGCTCACAATATTGAAGCTTGCGGATGTGTATTTGGAGCATGA
GATTAACGCTGAGCGCGCCATTCAGCTGTATGAGACCGCAGTACTTCGAT
TCAACTCGTCGAAGGGAAGGTCTAATCTGCTTGGATTATGGACCAAGGGC
ACGGAGCTTAAGGGCGATGTGGGACTTCTTGATGCTTCCCATATCTACAA
CTTTTGTTGGCGTGACACCATGAGAAACAGCCATCGCGGTTCCTTCGTGA
CTACAGCGCAAATGTTATGGACTGGTGTAGATCATGTTGAAGCGAATCAG
AAGAAGGCCATGGAGCTGTTGGCCTCGAAGAATTGGGTTACGCATGACTG
TTTCTATTTGATGTTGAGGCATGATTTGAGTACTCATCCTGGAGGAACGA
AAGCCGCTCGACGGCTTATGAAGAAAATCAATGACAACATTGATAAATGT
GATATCGGAAACATAAATTCTATAGTGATAAGCGAGAGCGATGGTTATGA
TGATAAGTTGTTAGCACTGGAGAGCTTTCGAGCCCAGACAACCATGAGGA
GCTCACTCCATGAGATTGTTTGGCTGGCTCCGTATTTACGAATGGGGCGC
CACAACCTACCGTTCCATGGCCATCCAGATTGTGTAACGAATCCCTTAAG
AATGTTTACACTTTGGGTTTCTGTAGCTTCTCTCAATCTGGCTAGCCTTC
TACTTGAGATTGAGGGTAAGCAACAAGAAGCTATGGCGATACTGGAGGAC
CTGATGGAAACCAATGTGAGGTTGATTGCTCGCCTGAATCTAGCGTATGT
TTTGATCAAAGGCATCACGCCGGACTCAAACCGCACGAGAGGAATGGAAC
TTTTGGCAGACGCCGTGAAAGAGACAAACGACGTTTCCGCTCGAGCGATG
CTTGCTGACGCGTTGTCGGAACGGCCGGACTCGGATGCTGACGATGTGGA
GCGGGGATGGAAGCTTTGGCGAAGCGTTGAGGAAGATGAAAAGGATGAGG
ATGAGCTGCGTAAGATCCGGCGCTTGATATCGGTGAGGAGTACAGAGAAG
TGGAAAACACTTGCATGTCAACAACAAGAGCATACGACGGTGAAGTCCTC
AGTGACTGCAAGAGATGATGACTCGCTTTCGTGCTCCACCTAA

protein sequence of Gcaud1245.t1

>Gcaud1245.t1 ID=Gcaud1245.t1|Name=Gcaud1245.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=631bp
MAANHEDPVEQARALEILVQRDNDINAMIRLGCLLLYNDKLLSQRARGVQ
MLERVIKQSHNGLAMYCLACFLWKCDDRTDQRRAFLLFERSLKEKEQPDV
LIRLSHCYLFGRGVAKDANLAVQMAERAFKHTKNADVMGNLAWTLIQAPD
YRTERKRAVALYKKAIHLSSSAEAMADMMNDLGLFYHNGNDNLRKAPKRA
SKWYKRAIKTYKYPSAMYNLAMLLLEEDPGAGDVQRAIQLLEDAMEREQQ
QDELTILKLADVYLEHEINAERAIQLYETAVLRFNSSKGRSNLLGLWTKG
TELKGDVGLLDASHIYNFCWRDTMRNSHRGSFVTTAQMLWTGVDHVEANQ
KKAMELLASKNWVTHDCFYLMLRHDLSTHPGGTKAARRLMKKINDNIDKC
DIGNINSIVISESDGYDDKLLALESFRAQTTMRSSLHEIVWLAPYLRMGR
HNLPFHGHPDCVTNPLRMFTLWVSVASLNLASLLLEIEGKQQEAMAILED
LMETNVRLIARLNLAYVLIKGITPDSNRTRGMELLADAVKETNDVSARAM
LADALSERPDSDADDVERGWKLWRSVEEDEKDEDELRKIRRLISVRSTEK
WKTLACQQQEHTTVKSSVTARDDDSLSCST*

mRNA from alignment at NODE_627_length_20665_cov_4.535384:11037..12929-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1245.t1 ID=Gcaud1245.t1|Name=Gcaud1245.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1893bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:11037..12929- (Gracilaria caudata M_176_S67 male)
ATGGCTGCCAACCACGAAGACCCGGTCGAGCAGGCACGTGCTCTGGAAAT
TTTGGTACAGCGAGACAATGACATCAACGCAATGATACGCTTGGGTTGTT
TGTTACTCTACAACGACAAGCTTCTCTCACAGCGAGCTCGAGGCGTTCAA
ATGTTGGAACGAGTCATTAAACAGTCACACAATGGGCTTGCTATGTATTG
TCTGGCTTGCTTTCTCTGGAAGTGCGACGACCGAACAGATCAACGTCGCG
CCTTTTTGCTTTTCGAACGTTCGTTGAAAGAGAAGGAGCAACCTGATGTG
CTTATTCGACTATCGCACTGCTATCTTTTTGGCAGAGGGGTTGCGAAAGA
TGCGAACCTTGCCGTGCAAATGGCAGAACGCGCCTTTAAGCATACGAAAA
ATGCTGATGTCATGGGCAACTTAGCCTGGACCTTGATCCAAGCTCCGGAC
TATCGCACGGAGAGGAAACGCGCCGTCGCACTGTACAAGAAGGCCATACA
TCTTTCTTCAAGTGCCGAAGCAATGGCTGACATGATGAACGACTTGGGTC
TCTTCTATCACAATGGTAACGACAACCTCAGAAAAGCACCTAAGAGAGCG
TCCAAGTGGTATAAGCGGGCGATAAAAACTTACAAATATCCTTCAGCAAT
GTATAACTTGGCCATGCTTCTTCTAGAGGAAGATCCCGGTGCCGGAGATG
TCCAAAGAGCAATTCAGTTGCTAGAAGATGCTATGGAACGAGAACAACAA
CAAGATGAGCTCACAATATTGAAGCTTGCGGATGTGTATTTGGAGCATGA
GATTAACGCTGAGCGCGCCATTCAGCTGTATGAGACCGCAGTACTTCGAT
TCAACTCGTCGAAGGGAAGGTCTAATCTGCTTGGATTATGGACCAAGGGC
ACGGAGCTTAAGGGCGATGTGGGACTTCTTGATGCTTCCCATATCTACAA
CTTTTGTTGGCGTGACACCATGAGAAACAGCCATCGCGGTTCCTTCGTGA
CTACAGCGCAAATGTTATGGACTGGTGTAGATCATGTTGAAGCGAATCAG
AAGAAGGCCATGGAGCTGTTGGCCTCGAAGAATTGGGTTACGCATGACTG
TTTCTATTTGATGTTGAGGCATGATTTGAGTACTCATCCTGGAGGAACGA
AAGCCGCTCGACGGCTTATGAAGAAAATCAATGACAACATTGATAAATGT
GATATCGGAAACATAAATTCTATAGTGATAAGCGAGAGCGATGGTTATGA
TGATAAGTTGTTAGCACTGGAGAGCTTTCGAGCCCAGACAACCATGAGGA
GCTCACTCCATGAGATTGTTTGGCTGGCTCCGTATTTACGAATGGGGCGC
CACAACCTACCGTTCCATGGCCATCCAGATTGTGTAACGAATCCCTTAAG
AATGTTTACACTTTGGGTTTCTGTAGCTTCTCTCAATCTGGCTAGCCTTC
TACTTGAGATTGAGGGTAAGCAACAAGAAGCTATGGCGATACTGGAGGAC
CTGATGGAAACCAATGTGAGGTTGATTGCTCGCCTGAATCTAGCGTATGT
TTTGATCAAAGGCATCACGCCGGACTCAAACCGCACGAGAGGAATGGAAC
TTTTGGCAGACGCCGTGAAAGAGACAAACGACGTTTCCGCTCGAGCGATG
CTTGCTGACGCGTTGTCGGAACGGCCGGACTCGGATGCTGACGATGTGGA
GCGGGGATGGAAGCTTTGGCGAAGCGTTGAGGAAGATGAAAAGGATGAGG
ATGAGCTGCGTAAGATCCGGCGCTTGATATCGGTGAGGAGTACAGAGAAG
TGGAAAACACTTGCATGTCAACAACAAGAGCATACGACGGTGAAGTCCTC
AGTGACTGCAAGAGATGATGACTCGCTTTCGTGCTCCACCTAA

Coding sequence (CDS) from alignment at NODE_627_length_20665_cov_4.535384:11037..12929-

>Gcaud1245.t1 ID=Gcaud1245.t1|Name=Gcaud1245.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1893bp|location=Sequence derived from alignment at NODE_627_length_20665_cov_4.535384:11037..12929- (Gracilaria caudata M_176_S67 male)
ATGGCTGCCAACCACGAAGACCCGGTCGAGCAGGCACGTGCTCTGGAAAT
TTTGGTACAGCGAGACAATGACATCAACGCAATGATACGCTTGGGTTGTT
TGTTACTCTACAACGACAAGCTTCTCTCACAGCGAGCTCGAGGCGTTCAA
ATGTTGGAACGAGTCATTAAACAGTCACACAATGGGCTTGCTATGTATTG
TCTGGCTTGCTTTCTCTGGAAGTGCGACGACCGAACAGATCAACGTCGCG
CCTTTTTGCTTTTCGAACGTTCGTTGAAAGAGAAGGAGCAACCTGATGTG
CTTATTCGACTATCGCACTGCTATCTTTTTGGCAGAGGGGTTGCGAAAGA
TGCGAACCTTGCCGTGCAAATGGCAGAACGCGCCTTTAAGCATACGAAAA
ATGCTGATGTCATGGGCAACTTAGCCTGGACCTTGATCCAAGCTCCGGAC
TATCGCACGGAGAGGAAACGCGCCGTCGCACTGTACAAGAAGGCCATACA
TCTTTCTTCAAGTGCCGAAGCAATGGCTGACATGATGAACGACTTGGGTC
TCTTCTATCACAATGGTAACGACAACCTCAGAAAAGCACCTAAGAGAGCG
TCCAAGTGGTATAAGCGGGCGATAAAAACTTACAAATATCCTTCAGCAAT
GTATAACTTGGCCATGCTTCTTCTAGAGGAAGATCCCGGTGCCGGAGATG
TCCAAAGAGCAATTCAGTTGCTAGAAGATGCTATGGAACGAGAACAACAA
CAAGATGAGCTCACAATATTGAAGCTTGCGGATGTGTATTTGGAGCATGA
GATTAACGCTGAGCGCGCCATTCAGCTGTATGAGACCGCAGTACTTCGAT
TCAACTCGTCGAAGGGAAGGTCTAATCTGCTTGGATTATGGACCAAGGGC
ACGGAGCTTAAGGGCGATGTGGGACTTCTTGATGCTTCCCATATCTACAA
CTTTTGTTGGCGTGACACCATGAGAAACAGCCATCGCGGTTCCTTCGTGA
CTACAGCGCAAATGTTATGGACTGGTGTAGATCATGTTGAAGCGAATCAG
AAGAAGGCCATGGAGCTGTTGGCCTCGAAGAATTGGGTTACGCATGACTG
TTTCTATTTGATGTTGAGGCATGATTTGAGTACTCATCCTGGAGGAACGA
AAGCCGCTCGACGGCTTATGAAGAAAATCAATGACAACATTGATAAATGT
GATATCGGAAACATAAATTCTATAGTGATAAGCGAGAGCGATGGTTATGA
TGATAAGTTGTTAGCACTGGAGAGCTTTCGAGCCCAGACAACCATGAGGA
GCTCACTCCATGAGATTGTTTGGCTGGCTCCGTATTTACGAATGGGGCGC
CACAACCTACCGTTCCATGGCCATCCAGATTGTGTAACGAATCCCTTAAG
AATGTTTACACTTTGGGTTTCTGTAGCTTCTCTCAATCTGGCTAGCCTTC
TACTTGAGATTGAGGGTAAGCAACAAGAAGCTATGGCGATACTGGAGGAC
CTGATGGAAACCAATGTGAGGTTGATTGCTCGCCTGAATCTAGCGTATGT
TTTGATCAAAGGCATCACGCCGGACTCAAACCGCACGAGAGGAATGGAAC
TTTTGGCAGACGCCGTGAAAGAGACAAACGACGTTTCCGCTCGAGCGATG
CTTGCTGACGCGTTGTCGGAACGGCCGGACTCGGATGCTGACGATGTGGA
GCGGGGATGGAAGCTTTGGCGAAGCGTTGAGGAAGATGAAAAGGATGAGG
ATGAGCTGCGTAAGATCCGGCGCTTGATATCGGTGAGGAGTACAGAGAAG
TGGAAAACACTTGCATGTCAACAACAAGAGCATACGACGGTGAAGTCCTC
AGTGACTGCAAGAGATGATGACTCGCTTTCGTGCTCCACCTAA