Gcaud1223.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1223.t1
Unique NameGcaud1223.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2412_length_5731_cov_4.498050contigNODE_2412_length_5731_cov_4.498050:1464..4008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog671143.DAMO_0882
PFAMsadh_short_C2
Max annot lvl2|Bacteria
KEGG koko:K03793
Evalue2.58e-52
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,2NQVU@2323|unclassified Bacteria
EC1.5.1.33
DescriptionEnoyl-(Acyl carrier protein) reductase
COG categoryIQ
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1223Gcaud1223Gracilaria caudata M_176_S67 malegeneNODE_2412_length_5731_cov_4.498050 1464..4008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1223.t1Gcaud1223.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2412_length_5731_cov_4.498050 1464..4008 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1223.t1.stop1Gcaud1223.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2412_length_5731_cov_4.498050 1464..1466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1223.t1.CDS1Gcaud1223.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2412_length_5731_cov_4.498050 1464..2241 -
Gcaud1223.t1.CDS2Gcaud1223.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2412_length_5731_cov_4.498050 3556..3925 -
Gcaud1223.t1.CDS3Gcaud1223.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2412_length_5731_cov_4.498050 3993..4008 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1223.t1.exon1Gcaud1223.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2412_length_5731_cov_4.498050 1464..2241 -
Gcaud1223.t1.exon2Gcaud1223.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2412_length_5731_cov_4.498050 3556..3925 -
Gcaud1223.t1.exon3Gcaud1223.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2412_length_5731_cov_4.498050 3993..4008 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1223.t1.intron1Gcaud1223.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2412_length_5731_cov_4.498050 2242..3555 -
Gcaud1223.t1.intron2Gcaud1223.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2412_length_5731_cov_4.498050 3926..3992 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1223.t1.start1Gcaud1223.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2412_length_5731_cov_4.498050 4006..4008 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1223.t1 ID=Gcaud1223.t1|Name=Gcaud1223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=388bp
MGNRIYFKANIIRPIEAMLGRKRSSNRNAPRTIDIDIEMFNGTPVDLSSW
KQAFCLVPLSELIPDYDYPICNSRDRQQKVAEMADKVRDQVWMRKREDVI
ILKQIQANVLDDKRTVDKRLLSSETPLAFEVHSQRGKERINLGEILCVMK
LDGKTVLVTGGARRIGRMFALGCAECGADVIVHHAHSPKQAESVREEIVR
LGRRAWVLHCDFSEPESVAQLIERAMNISPLFALVNSASIFENVCLQETQ
LEVWKQHMNVNLTAPFLLSQAFARAVRHGRIVNILDWRALRPGADHFPYT
VSKAALAAMTKSLAVALCPDISVNGLALGAVLPPADRREVGDGVIARVPA
GRWCERAELCEALVFLLTGPAYITGEIIHLDGGRHLV*
back to top

spliced messenger RNA

>Gcaud1223.t1 ID=Gcaud1223.t1|Name=Gcaud1223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:1464..4008- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAACAGAATCTACTTCAAGGCCAATATCATTCGACCCATTGAGGC
CATGCTTGGGCGGAAGCGTTCTTCAAATAGGAATGCTCCTCGTACAATAG
ATATAGATATCGAGATGTTCAATGGGACCCCGGTCGACCTCAGTTCTTGG
AAACAGGCTTTCTGTTTAGTACCATTGTCTGAATTAATACCTGATTATGA
CTACCCCATCTGCAATTCTCGTGACAGGCAGCAAAAAGTTGCTGAGATGG
CTGACAAGGTGCGTGATCAAGTATGGATGCGCAAACGAGAGGATGTTATC
ATTCTCAAACAGATCCAGGCTAACGTTTTAGATGACAAGAGGACTGTGGA
CAAACGTCTCCTTTCGTCTGAAACACCGCTAGCATTTGAAGTTCATTCGC
AACGTGGAAAGGAACGCATTAATCTTGGTGAGATTTTGTGCGTGATGAAG
CTGGACGGCAAAACCGTGCTGGTGACTGGCGGCGCGCGACGAATTGGACG
CATGTTCGCGCTTGGCTGTGCTGAATGTGGGGCCGATGTGATTGTGCATC
ACGCACACTCTCCAAAGCAAGCAGAGTCAGTGCGAGAAGAAATCGTGAGA
CTGGGGCGTCGTGCGTGGGTGTTACACTGCGATTTCTCCGAACCCGAGAG
CGTGGCACAGTTGATTGAACGCGCAATGAACATATCGCCGTTGTTTGCTC
TGGTGAACAGTGCCTCTATCTTTGAGAACGTTTGTTTACAAGAGACTCAA
CTGGAGGTGTGGAAGCAGCACATGAACGTGAATCTCACCGCGCCATTCCT
GCTCAGTCAGGCGTTTGCGCGCGCTGTGCGGCATGGACGCATTGTGAACA
TCCTCGATTGGCGTGCTTTGCGGCCCGGCGCTGACCACTTTCCGTACACA
GTGAGCAAGGCGGCGCTTGCAGCGATGACCAAATCGTTGGCGGTGGCGCT
GTGCCCAGACATATCCGTGAATGGTCTGGCGCTGGGCGCTGTTCTGCCGC
CCGCGGACAGGCGTGAGGTGGGCGACGGCGTGATTGCGCGGGTGCCTGCT
GGAAGATGGTGCGAGCGTGCGGAGCTGTGTGAGGCGTTGGTTTTTCTGCT
CACTGGGCCGGCGTACATCACGGGAGAGATCATTCACTTGGACGGCGGCA
GACACCTTGTTTAG
back to top

protein sequence of Gcaud1223.t1

>Gcaud1223.t1 ID=Gcaud1223.t1|Name=Gcaud1223.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=388bp
MGNRIYFKANIIRPIEAMLGRKRSSNRNAPRTIDIDIEMFNGTPVDLSSW
KQAFCLVPLSELIPDYDYPICNSRDRQQKVAEMADKVRDQVWMRKREDVI
ILKQIQANVLDDKRTVDKRLLSSETPLAFEVHSQRGKERINLGEILCVMK
LDGKTVLVTGGARRIGRMFALGCAECGADVIVHHAHSPKQAESVREEIVR
LGRRAWVLHCDFSEPESVAQLIERAMNISPLFALVNSASIFENVCLQETQ
LEVWKQHMNVNLTAPFLLSQAFARAVRHGRIVNILDWRALRPGADHFPYT
VSKAALAAMTKSLAVALCPDISVNGLALGAVLPPADRREVGDGVIARVPA
GRWCERAELCEALVFLLTGPAYITGEIIHLDGGRHLV*
back to top

mRNA from alignment at NODE_2412_length_5731_cov_4.498050:1464..4008-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1223.t1 ID=Gcaud1223.t1|Name=Gcaud1223.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2545bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:1464..4008- (Gracilaria caudata M_176_S67 male)
ATGGGAAACAGAATCTGTAGGTTGTGATGGTCCGAATTTTTTGAATGCAG
CTATGTTAGTGCTAACGTCGAAGAGCGCTGAAGACTTCAAGGCCAATATC
ATTCGACCCATTGAGGCCATGCTTGGGCGGAAGCGTTCTTCAAATAGGAA
TGCTCCTCGTACAATAGATATAGATATCGAGATGTTCAATGGGACCCCGG
TCGACCTCAGTTCTTGGAAACAGGCTTTCTGTTTAGTACCATTGTCTGAA
TTAATACCTGATTATGACTACCCCATCTGCAATTCTCGTGACAGGCAGCA
AAAAGTTGCTGAGATGGCTGACAAGGTGCGTGATCAAGTATGGATGCGCA
AACGAGAGGATGTTATCATTCTCAAACAGATCCAGGCTAACGTTTTAGAT
GACAAGAGGACTGTGGACAAACGTCTCCTTTCGTCTGAAACACCGCTAGC
ATTGTAAAAGTGAGATCAAGGCTGCGTTGCGACTTGAAGTCACGTTTGTG
TGCGCAAAGGTGTGCCCCGTCGAGGACGATGGTCACACTCCTGGTTTATG
TGAAATACTCGCCAGTTCAGCACATCAAGCGCCTCTACACATGCTCCGGG
GGACAGAATATCTCAGCTCCCCATTGCATGGCTGACAGGCTGATTATGAA
GTCAGTGGAGGTGCAAAATGACTTGAGCTCGCTCCGTGAAGGTCAATGGT
ATGTGATGCTGTTTGCAAAACTGAAGAACGATTCTCGACCTCTGAAGGTG
ATTCACTCCCCCGATGCTTTGAACAAAGCTCTGCTGGCGCGTTTACAGTC
AATGTCTATGAAATCGTTTGGGGGCACAGTGGGCCACCTCTGAGAGTGGT
TGATATGTTTCGCAAAGGGTTCCCATGTAGAGCCCTGATCGTTATATGGT
TGACTCTCCTCGAGAATTAAGCATTTGCAACATACTTATTGACCGAATGA
GTAAGTTAAGTCGATACCAGAGCGAGCGAGTTATGTATACGCTCGGATTG
GGGCTTCTCTGCGTATATGTGCAATGCGGAAGAACTTGAGTTGATGTTCC
ACCACCAGAAAGTTGTCAAAGAAGCGATACAGTATTTCTTCTGTACTACC
TTCGTAAAATGCTCAGAAGTGAAAGGATGCTTGCTAACCGTCTTACCTTG
GTTCGGTGCTCCAGGAGCACATTCTCCGTAGTTGCTGTCGGGCGACGATG
CGTGATGACGGAGTCGAGTGATTTACAGACCTTGAGGGTAAGCAAACCTT
GATTCAGTTGTAATCAACTGAAAGTCTTCGTGAGCCATCCGAAACCCGAA
AAAGGAATACACCTTCTTCAATGGGAGATATGCGCATGTCACGGGATAAG
TTTTGTGTGAGATGGTCAAATGTTTGAAACGCGGTTTCTATCTTTGGCAC
CCTTGTACGAAGTCGTCGAACACGCTTTTCGACACCTTTCGTAATTACAT
GAGCTTACCGATAAGCACGTGCGCGATATGCGTGACTCATCCGATGATCT
CATTTGATAGGGCACACGACGCTCCGAATCTGGTAACGTTGGAAAGCGCC
TCCCGCTGGCCATGTCACGCTCTGTTGAGAAACGTGCTCTAGGGTCCTAA
GCTGCTTTGGAAGGCTCGTCCTCAGGAAAACATAAGCTGTGAGAGGAGCC
ATCAAGTTTTTTCTTGCGGTGTGAACAGGGAAATCATTTCGAGTAGCATC
ATTCAACGGAAAAAAACTCTTGTTTCCAAGCAGCACAGCAATTATTTTGC
TGAGAGTGATGAAGCAGTGAAGTTCATTCGCAACGTGGAAAGGAACGCAT
TAATCTTGGTGAGATTTTGTGCGTGATGAAGCTGGACGGCAAAACCGTGC
TGGTGACTGGCGGCGCGCGACGAATTGGACGCATGTTCGCGCTTGGCTGT
GCTGAATGTGGGGCCGATGTGATTGTGCATCACGCACACTCTCCAAAGCA
AGCAGAGTCAGTGCGAGAAGAAATCGTGAGACTGGGGCGTCGTGCGTGGG
TGTTACACTGCGATTTCTCCGAACCCGAGAGCGTGGCACAGTTGATTGAA
CGCGCAATGAACATATCGCCGTTGTTTGCTCTGGTGAACAGTGCCTCTAT
CTTTGAGAACGTTTGTTTACAAGAGACTCAACTGGAGGTGTGGAAGCAGC
ACATGAACGTGAATCTCACCGCGCCATTCCTGCTCAGTCAGGCGTTTGCG
CGCGCTGTGCGGCATGGACGCATTGTGAACATCCTCGATTGGCGTGCTTT
GCGGCCCGGCGCTGACCACTTTCCGTACACAGTGAGCAAGGCGGCGCTTG
CAGCGATGACCAAATCGTTGGCGGTGGCGCTGTGCCCAGACATATCCGTG
AATGGTCTGGCGCTGGGCGCTGTTCTGCCGCCCGCGGACAGGCGTGAGGT
GGGCGACGGCGTGATTGCGCGGGTGCCTGCTGGAAGATGGTGCGAGCGTG
CGGAGCTGTGTGAGGCGTTGGTTTTTCTGCTCACTGGGCCGGCGTACATC
ACGGGAGAGATCATTCACTTGGACGGCGGCAGACACCTTGTTTAG
back to top

Coding sequence (CDS) from alignment at NODE_2412_length_5731_cov_4.498050:1464..4008-

>Gcaud1223.t1 ID=Gcaud1223.t1|Name=Gcaud1223.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1164bp|location=Sequence derived from alignment at NODE_2412_length_5731_cov_4.498050:1464..4008- (Gracilaria caudata M_176_S67 male)
ATGGGAAACAGAATCTACTTCAAGGCCAATATCATTCGACCCATTGAGGC
CATGCTTGGGCGGAAGCGTTCTTCAAATAGGAATGCTCCTCGTACAATAG
ATATAGATATCGAGATGTTCAATGGGACCCCGGTCGACCTCAGTTCTTGG
AAACAGGCTTTCTGTTTAGTACCATTGTCTGAATTAATACCTGATTATGA
CTACCCCATCTGCAATTCTCGTGACAGGCAGCAAAAAGTTGCTGAGATGG
CTGACAAGGTGCGTGATCAAGTATGGATGCGCAAACGAGAGGATGTTATC
ATTCTCAAACAGATCCAGGCTAACGTTTTAGATGACAAGAGGACTGTGGA
CAAACGTCTCCTTTCGTCTGAAACACCGCTAGCATTTGAAGTTCATTCGC
AACGTGGAAAGGAACGCATTAATCTTGGTGAGATTTTGTGCGTGATGAAG
CTGGACGGCAAAACCGTGCTGGTGACTGGCGGCGCGCGACGAATTGGACG
CATGTTCGCGCTTGGCTGTGCTGAATGTGGGGCCGATGTGATTGTGCATC
ACGCACACTCTCCAAAGCAAGCAGAGTCAGTGCGAGAAGAAATCGTGAGA
CTGGGGCGTCGTGCGTGGGTGTTACACTGCGATTTCTCCGAACCCGAGAG
CGTGGCACAGTTGATTGAACGCGCAATGAACATATCGCCGTTGTTTGCTC
TGGTGAACAGTGCCTCTATCTTTGAGAACGTTTGTTTACAAGAGACTCAA
CTGGAGGTGTGGAAGCAGCACATGAACGTGAATCTCACCGCGCCATTCCT
GCTCAGTCAGGCGTTTGCGCGCGCTGTGCGGCATGGACGCATTGTGAACA
TCCTCGATTGGCGTGCTTTGCGGCCCGGCGCTGACCACTTTCCGTACACA
GTGAGCAAGGCGGCGCTTGCAGCGATGACCAAATCGTTGGCGGTGGCGCT
GTGCCCAGACATATCCGTGAATGGTCTGGCGCTGGGCGCTGTTCTGCCGC
CCGCGGACAGGCGTGAGGTGGGCGACGGCGTGATTGCGCGGGTGCCTGCT
GGAAGATGGTGCGAGCGTGCGGAGCTGTGTGAGGCGTTGGTTTTTCTGCT
CACTGGGCCGGCGTACATCACGGGAGAGATCATTCACTTGGACGGCGGCA
GACACCTTGTTTAG
back to top