Gcaud1199.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1199.t1
Unique NameGcaud1199.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_630_length_20618_cov_4.294685contigNODE_630_length_20618_cov_4.294685:14605..15157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0QYZ8
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
Evalue1.51e-19
EggNOG OGsCOG0545@1|root,KOG0549@2759|Eukaryota
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1199Gcaud1199Gracilaria caudata M_176_S67 malegeneNODE_630_length_20618_cov_4.294685 14605..15157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1199.t1Gcaud1199.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_630_length_20618_cov_4.294685 14605..15157 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1199.t1.stop1Gcaud1199.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_630_length_20618_cov_4.294685 14605..14607 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1199.t1.CDS1Gcaud1199.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_630_length_20618_cov_4.294685 14605..14960 -
Gcaud1199.t1.CDS2Gcaud1199.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_630_length_20618_cov_4.294685 15043..15157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1199.t1.exon1Gcaud1199.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_630_length_20618_cov_4.294685 14605..14960 -
Gcaud1199.t1.exon2Gcaud1199.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_630_length_20618_cov_4.294685 15043..15157 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1199.t1.intron1Gcaud1199.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_630_length_20618_cov_4.294685 14961..15042 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1199.t1.start1Gcaud1199.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_630_length_20618_cov_4.294685 15155..15157 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1199.t1 ID=Gcaud1199.t1|Name=Gcaud1199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=157bp
LDRDEDRKSARSKHTDEKKGISSRLGFDDAPGISIAGCEDDKPIVESTSI
VTVHYTLGTTGARNGWRIDSTYEREPFTFRMGTRDVISGMQEGVLGMHVG
GKRRLLIPSSIGYRSAKDQPVPKGFAEFQRFKNIYLNPDRVYEPDVVMDV
TVLRVR*
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spliced messenger RNA

>Gcaud1199.t1 ID=Gcaud1199.t1|Name=Gcaud1199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=471bp|location=Sequence derived from alignment at NODE_630_length_20618_cov_4.294685:14605..15157- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGACCGTGATGAAGACAGAAAAAGCGCCCGTTCCAAACACACCGATGA
AAAGAAGGGGATTTCTTCGCGTCTTGGCTTTGATGACGCTCCAGGCATCA
GCATCGCAGGCTGCGAAGATGATAAGCCAATAGTGGAATCCACTTCCATT
GTAACGGTGCATTACACACTTGGAACCACTGGTGCACGAAATGGATGGCG
GATTGACAGCACTTATGAACGCGAACCATTTACTTTCCGTATGGGTACTA
GGGACGTTATTTCTGGAATGCAAGAAGGGGTGTTAGGAATGCATGTGGGT
GGGAAGAGGCGTTTGTTGATTCCCAGCTCCATCGGCTATCGAAGCGCCAA
AGATCAACCCGTACCCAAAGGATTTGCGGAATTCCAACGCTTCAAGAACA
TATATCTCAATCCTGATCGAGTTTACGAGCCTGATGTGGTAATGGATGTA
ACTGTGCTTAGAGTTCGTTGA
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protein sequence of Gcaud1199.t1

>Gcaud1199.t1 ID=Gcaud1199.t1|Name=Gcaud1199.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=157bp
LDRDEDRKSARSKHTDEKKGISSRLGFDDAPGISIAGCEDDKPIVESTSI
VTVHYTLGTTGARNGWRIDSTYEREPFTFRMGTRDVISGMQEGVLGMHVG
GKRRLLIPSSIGYRSAKDQPVPKGFAEFQRFKNIYLNPDRVYEPDVVMDV
TVLRVR*
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mRNA from alignment at NODE_630_length_20618_cov_4.294685:14605..15157-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1199.t1 ID=Gcaud1199.t1|Name=Gcaud1199.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=553bp|location=Sequence derived from alignment at NODE_630_length_20618_cov_4.294685:14605..15157- (Gracilaria caudata M_176_S67 male)
TTGGACCGTGATGAAGACAGAAAAAGCGCCCGTTCCAAACACACCGATGA
AAAGAAGGGGATTTCTTCGCGTCTTGGCTTTGATGACGCTCCAGGCATCA
GCATCGCAGGCTGCGGTACGTGTGGCTGATCCCTCTGCTGGGAGCAAAAT
TACAACAACGGCAACAGGCTTACAATATTATGATTTCATATTGCCAGAAG
ATGATAAGCCAATAGTGGAATCCACTTCCATTGTAACGGTGCATTACACA
CTTGGAACCACTGGTGCACGAAATGGATGGCGGATTGACAGCACTTATGA
ACGCGAACCATTTACTTTCCGTATGGGTACTAGGGACGTTATTTCTGGAA
TGCAAGAAGGGGTGTTAGGAATGCATGTGGGTGGGAAGAGGCGTTTGTTG
ATTCCCAGCTCCATCGGCTATCGAAGCGCCAAAGATCAACCCGTACCCAA
AGGATTTGCGGAATTCCAACGCTTCAAGAACATATATCTCAATCCTGATC
GAGTTTACGAGCCTGATGTGGTAATGGATGTAACTGTGCTTAGAGTTCGT
TGA
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Coding sequence (CDS) from alignment at NODE_630_length_20618_cov_4.294685:14605..15157-

>Gcaud1199.t1 ID=Gcaud1199.t1|Name=Gcaud1199.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=471bp|location=Sequence derived from alignment at NODE_630_length_20618_cov_4.294685:14605..15157- (Gracilaria caudata M_176_S67 male)
TTGGACCGTGATGAAGACAGAAAAAGCGCCCGTTCCAAACACACCGATGA
AAAGAAGGGGATTTCTTCGCGTCTTGGCTTTGATGACGCTCCAGGCATCA
GCATCGCAGGCTGCGAAGATGATAAGCCAATAGTGGAATCCACTTCCATT
GTAACGGTGCATTACACACTTGGAACCACTGGTGCACGAAATGGATGGCG
GATTGACAGCACTTATGAACGCGAACCATTTACTTTCCGTATGGGTACTA
GGGACGTTATTTCTGGAATGCAAGAAGGGGTGTTAGGAATGCATGTGGGT
GGGAAGAGGCGTTTGTTGATTCCCAGCTCCATCGGCTATCGAAGCGCCAA
AGATCAACCCGTACCCAAAGGATTTGCGGAATTCCAACGCTTCAAGAACA
TATATCTCAATCCTGATCGAGTTTACGAGCCTGATGTGGTAATGGATGTA
ACTGTGCTTAGAGTTCGTTGA
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