Gcaud1073.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1073.t2
Unique Name	Gcaud1073.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	242

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_966_length_15672_cov_4.486041	contig	NODE_966_length_15672_cov_4.486041:12013..12738 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1073	Gcaud1073	Gracilaria caudata M_176_S67 male	gene	NODE_966_length_15672_cov_4.486041 12013..13353 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t2.stop1	Gcaud1073.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_966_length_15672_cov_4.486041 12013..12015 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t2.CDS1	Gcaud1073.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_966_length_15672_cov_4.486041 12013..12738 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t2.exon1	Gcaud1073.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_966_length_15672_cov_4.486041 12013..12738 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t2.start1	Gcaud1073.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_966_length_15672_cov_4.486041 12736..12738 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t2	Gcaud1073.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_966_length_15672_cov_4.486041 12013..12738 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_966_length_15672_cov_4.486041:12013..12738-
coding sequence from alignment at NODE_966_length_15672_cov_4.486041:12013..12738-

mRNA sequence

>Gcaud1073.t2 ID=Gcaud1073.t2|Name=Gcaud1073.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=242bp
MPLHARREGCYQRCNAHLKAHLRYHGKHTIDLDTSANEPRPLNVDIYKTA
DCALSLINEPYSMFLDTKSQVFVVLTLIMEICVIGDLAYFVRGKYLDDQL
QNMVKRQHAHNWTSLKGRSALVHRRVIDRLQLWDWKPGNFEHFTADGALN
KETQSQLFYVLLEKSRLLHRRPVTVGNNLAMRIVKALKACELDGLEFECF
LYKQVDQWLASWGCDPTELRRAQKPVLPWPSPVVESSLPLG*

spliced messenger RNA

>Gcaud1073.t2 ID=Gcaud1073.t2|Name=Gcaud1073.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:12013..12738- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTCCACGCCAGACGTGAAGGTTGTTACCAGCGCTGCAATGCTCA
TTTGAAAGCTCACTTGAGATACCACGGAAAACACACCATCGATTTGGACA
CCTCCGCCAATGAACCGCGACCGCTCAATGTTGATATCTACAAGACAGCC
GACTGCGCTCTTTCGCTCATAAACGAGCCCTACTCCATGTTCTTGGATAC
TAAAAGTCAAGTTTTTGTGGTGCTGACCCTGATCATGGAGATATGTGTCA
TCGGCGATCTTGCGTACTTTGTGAGAGGCAAGTATCTAGATGATCAGTTG
CAAAATATGGTCAAACGGCAACACGCACACAACTGGACCAGTTTGAAAGG
AAGGTCAGCGCTAGTGCATAGGCGCGTGATAGACCGATTGCAGCTGTGGG
ATTGGAAGCCAGGGAACTTTGAACACTTCACGGCGGACGGTGCGTTGAAC
AAAGAGACTCAGTCTCAATTGTTCTACGTTCTTCTCGAGAAATCAAGACT
GCTCCACCGGCGGCCTGTTACCGTCGGCAACAACCTAGCAATGAGAATAG
TCAAAGCTCTAAAGGCTTGCGAACTGGATGGACTGGAGTTTGAATGCTTT
CTCTACAAACAAGTGGACCAATGGCTTGCGTCGTGGGGTTGTGACCCGAC
AGAACTCCGTCGAGCGCAAAAGCCAGTACTCCCATGGCCATCTCCCGTGG
TCGAAAGTTCGCTTCCATTAGGATAA

protein sequence of Gcaud1073.t2

>Gcaud1073.t2 ID=Gcaud1073.t2|Name=Gcaud1073.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=242bp
MPLHARREGCYQRCNAHLKAHLRYHGKHTIDLDTSANEPRPLNVDIYKTA
DCALSLINEPYSMFLDTKSQVFVVLTLIMEICVIGDLAYFVRGKYLDDQL
QNMVKRQHAHNWTSLKGRSALVHRRVIDRLQLWDWKPGNFEHFTADGALN
KETQSQLFYVLLEKSRLLHRRPVTVGNNLAMRIVKALKACELDGLEFECF
LYKQVDQWLASWGCDPTELRRAQKPVLPWPSPVVESSLPLG*

mRNA from alignment at NODE_966_length_15672_cov_4.486041:12013..12738-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1073.t2 ID=Gcaud1073.t2|Name=Gcaud1073.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:12013..12738- (Gracilaria caudata M_176_S67 male)
ATGCCGCTCCACGCCAGACGTGAAGGTTGTTACCAGCGCTGCAATGCTCA
TTTGAAAGCTCACTTGAGATACCACGGAAAACACACCATCGATTTGGACA
CCTCCGCCAATGAACCGCGACCGCTCAATGTTGATATCTACAAGACAGCC
GACTGCGCTCTTTCGCTCATAAACGAGCCCTACTCCATGTTCTTGGATAC
TAAAAGTCAAGTTTTTGTGGTGCTGACCCTGATCATGGAGATATGTGTCA
TCGGCGATCTTGCGTACTTTGTGAGAGGCAAGTATCTAGATGATCAGTTG
CAAAATATGGTCAAACGGCAACACGCACACAACTGGACCAGTTTGAAAGG
AAGGTCAGCGCTAGTGCATAGGCGCGTGATAGACCGATTGCAGCTGTGGG
ATTGGAAGCCAGGGAACTTTGAACACTTCACGGCGGACGGTGCGTTGAAC
AAAGAGACTCAGTCTCAATTGTTCTACGTTCTTCTCGAGAAATCAAGACT
GCTCCACCGGCGGCCTGTTACCGTCGGCAACAACCTAGCAATGAGAATAG
TCAAAGCTCTAAAGGCTTGCGAACTGGATGGACTGGAGTTTGAATGCTTT
CTCTACAAACAAGTGGACCAATGGCTTGCGTCGTGGGGTTGTGACCCGAC
AGAACTCCGTCGAGCGCAAAAGCCAGTACTCCCATGGCCATCTCCCGTGG
TCGAAAGTTCGCTTCCATTAGGATAA

Coding sequence (CDS) from alignment at NODE_966_length_15672_cov_4.486041:12013..12738-

>Gcaud1073.t2 ID=Gcaud1073.t2|Name=Gcaud1073.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=726bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:12013..12738- (Gracilaria caudata M_176_S67 male)
ATGCCGCTCCACGCCAGACGTGAAGGTTGTTACCAGCGCTGCAATGCTCA
TTTGAAAGCTCACTTGAGATACCACGGAAAACACACCATCGATTTGGACA
CCTCCGCCAATGAACCGCGACCGCTCAATGTTGATATCTACAAGACAGCC
GACTGCGCTCTTTCGCTCATAAACGAGCCCTACTCCATGTTCTTGGATAC
TAAAAGTCAAGTTTTTGTGGTGCTGACCCTGATCATGGAGATATGTGTCA
TCGGCGATCTTGCGTACTTTGTGAGAGGCAAGTATCTAGATGATCAGTTG
CAAAATATGGTCAAACGGCAACACGCACACAACTGGACCAGTTTGAAAGG
AAGGTCAGCGCTAGTGCATAGGCGCGTGATAGACCGATTGCAGCTGTGGG
ATTGGAAGCCAGGGAACTTTGAACACTTCACGGCGGACGGTGCGTTGAAC
AAAGAGACTCAGTCTCAATTGTTCTACGTTCTTCTCGAGAAATCAAGACT
GCTCCACCGGCGGCCTGTTACCGTCGGCAACAACCTAGCAATGAGAATAG
TCAAAGCTCTAAAGGCTTGCGAACTGGATGGACTGGAGTTTGAATGCTTT
CTCTACAAACAAGTGGACCAATGGCTTGCGTCGTGGGGTTGTGACCCGAC
AGAACTCCGTCGAGCGCAAAAGCCAGTACTCCCATGGCCATCTCCCGTGG
TCGAAAGTTCGCTTCCATTAGGATAA