Gcaud1073.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1073.t1
Unique Name	Gcaud1073.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	447

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_966_length_15672_cov_4.486041	contig	NODE_966_length_15672_cov_4.486041:12013..13353 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1073	Gcaud1073	Gracilaria caudata M_176_S67 male	gene	NODE_966_length_15672_cov_4.486041 12013..13353 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t1.stop1	Gcaud1073.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_966_length_15672_cov_4.486041 12013..12015 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t1.CDS1	Gcaud1073.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_966_length_15672_cov_4.486041 12013..13353 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t1.exon1	Gcaud1073.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_966_length_15672_cov_4.486041 12013..13353 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t1.start1	Gcaud1073.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_966_length_15672_cov_4.486041 13351..13353 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1073.t1	Gcaud1073.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_966_length_15672_cov_4.486041 12013..13353 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_966_length_15672_cov_4.486041:12013..13353-
coding sequence from alignment at NODE_966_length_15672_cov_4.486041:12013..13353-

mRNA sequence

>Gcaud1073.t1 ID=Gcaud1073.t1|Name=Gcaud1073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=447bp
MAPIVHQSSDAAPSGFGTSLELALITASIALTVLIQLMRARLPGRLFSTR
RFWRKNSLLLVLYLIIALVSIASLTLGWLRRISLEALVAISFTLASTLAH
IGSRVFVIHRALRFYWGAYKMDYGVHADTIWDANEFCYVRVESPCRFVIR
GAVRPGSKCLGDACNARIYCVYLSDKPLFSPLSALLSTLRRRLRYDGDTT
EPKVYMPLHARREGCYQRCNAHLKAHLRYHGKHTIDLDTSANEPRPLNVD
IYKTADCALSLINEPYSMFLDTKSQVFVVLTLIMEICVIGDLAYFVRGKY
LDDQLQNMVKRQHAHNWTSLKGRSALVHRRVIDRLQLWDWKPGNFEHFTA
DGALNKETQSQLFYVLLEKSRLLHRRPVTVGNNLAMRIVKALKACELDGL
EFECFLYKQVDQWLASWGCDPTELRRAQKPVLPWPSPVVESSLPLG*

spliced messenger RNA

>Gcaud1073.t1 ID=Gcaud1073.t1|Name=Gcaud1073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:12013..13353- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCATAGTGCATCAAAGTTCAGACGCTGCCCCGTCGGGCTTCGG
CACCAGCCTAGAACTCGCGCTTATCACCGCCTCCATAGCTCTCACCGTGC
TCATTCAACTGATGCGCGCGAGGCTTCCGGGAAGACTATTCTCCACGCGT
CGCTTTTGGAGAAAGAACTCGCTCCTGTTGGTGTTGTACCTCATCATTGC
GCTTGTGTCCATCGCGTCGCTCACGCTCGGTTGGCTGCGCCGAATCAGCT
TGGAAGCGCTGGTGGCCATCAGCTTCACGCTTGCCTCCACGCTCGCGCAC
ATCGGATCGCGAGTGTTTGTGATCCATCGCGCGCTCAGGTTTTACTGGGG
CGCATATAAAATGGACTACGGTGTTCATGCCGACACCATATGGGATGCAA
ACGAGTTTTGTTACGTTCGCGTCGAAAGCCCATGCCGTTTTGTCATCCGC
GGCGCCGTGCGCCCCGGCAGCAAATGCCTGGGCGACGCTTGCAATGCACG
CATATACTGCGTATATCTGTCCGACAAGCCGCTGTTTTCACCGCTCAGCG
CATTGCTTTCAACGCTGCGCCGACGGCTGCGCTACGATGGCGATACGACA
GAGCCCAAGGTGTACATGCCGCTCCACGCCAGACGTGAAGGTTGTTACCA
GCGCTGCAATGCTCATTTGAAAGCTCACTTGAGATACCACGGAAAACACA
CCATCGATTTGGACACCTCCGCCAATGAACCGCGACCGCTCAATGTTGAT
ATCTACAAGACAGCCGACTGCGCTCTTTCGCTCATAAACGAGCCCTACTC
CATGTTCTTGGATACTAAAAGTCAAGTTTTTGTGGTGCTGACCCTGATCA
TGGAGATATGTGTCATCGGCGATCTTGCGTACTTTGTGAGAGGCAAGTAT
CTAGATGATCAGTTGCAAAATATGGTCAAACGGCAACACGCACACAACTG
GACCAGTTTGAAAGGAAGGTCAGCGCTAGTGCATAGGCGCGTGATAGACC
GATTGCAGCTGTGGGATTGGAAGCCAGGGAACTTTGAACACTTCACGGCG
GACGGTGCGTTGAACAAAGAGACTCAGTCTCAATTGTTCTACGTTCTTCT
CGAGAAATCAAGACTGCTCCACCGGCGGCCTGTTACCGTCGGCAACAACC
TAGCAATGAGAATAGTCAAAGCTCTAAAGGCTTGCGAACTGGATGGACTG
GAGTTTGAATGCTTTCTCTACAAACAAGTGGACCAATGGCTTGCGTCGTG
GGGTTGTGACCCGACAGAACTCCGTCGAGCGCAAAAGCCAGTACTCCCAT
GGCCATCTCCCGTGGTCGAAAGTTCGCTTCCATTAGGATAA

protein sequence of Gcaud1073.t1

>Gcaud1073.t1 ID=Gcaud1073.t1|Name=Gcaud1073.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=447bp
MAPIVHQSSDAAPSGFGTSLELALITASIALTVLIQLMRARLPGRLFSTR
RFWRKNSLLLVLYLIIALVSIASLTLGWLRRISLEALVAISFTLASTLAH
IGSRVFVIHRALRFYWGAYKMDYGVHADTIWDANEFCYVRVESPCRFVIR
GAVRPGSKCLGDACNARIYCVYLSDKPLFSPLSALLSTLRRRLRYDGDTT
EPKVYMPLHARREGCYQRCNAHLKAHLRYHGKHTIDLDTSANEPRPLNVD
IYKTADCALSLINEPYSMFLDTKSQVFVVLTLIMEICVIGDLAYFVRGKY
LDDQLQNMVKRQHAHNWTSLKGRSALVHRRVIDRLQLWDWKPGNFEHFTA
DGALNKETQSQLFYVLLEKSRLLHRRPVTVGNNLAMRIVKALKACELDGL
EFECFLYKQVDQWLASWGCDPTELRRAQKPVLPWPSPVVESSLPLG*

mRNA from alignment at NODE_966_length_15672_cov_4.486041:12013..13353-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1073.t1 ID=Gcaud1073.t1|Name=Gcaud1073.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1341bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:12013..13353- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCATAGTGCATCAAAGTTCAGACGCTGCCCCGTCGGGCTTCGG
CACCAGCCTAGAACTCGCGCTTATCACCGCCTCCATAGCTCTCACCGTGC
TCATTCAACTGATGCGCGCGAGGCTTCCGGGAAGACTATTCTCCACGCGT
CGCTTTTGGAGAAAGAACTCGCTCCTGTTGGTGTTGTACCTCATCATTGC
GCTTGTGTCCATCGCGTCGCTCACGCTCGGTTGGCTGCGCCGAATCAGCT
TGGAAGCGCTGGTGGCCATCAGCTTCACGCTTGCCTCCACGCTCGCGCAC
ATCGGATCGCGAGTGTTTGTGATCCATCGCGCGCTCAGGTTTTACTGGGG
CGCATATAAAATGGACTACGGTGTTCATGCCGACACCATATGGGATGCAA
ACGAGTTTTGTTACGTTCGCGTCGAAAGCCCATGCCGTTTTGTCATCCGC
GGCGCCGTGCGCCCCGGCAGCAAATGCCTGGGCGACGCTTGCAATGCACG
CATATACTGCGTATATCTGTCCGACAAGCCGCTGTTTTCACCGCTCAGCG
CATTGCTTTCAACGCTGCGCCGACGGCTGCGCTACGATGGCGATACGACA
GAGCCCAAGGTGTACATGCCGCTCCACGCCAGACGTGAAGGTTGTTACCA
GCGCTGCAATGCTCATTTGAAAGCTCACTTGAGATACCACGGAAAACACA
CCATCGATTTGGACACCTCCGCCAATGAACCGCGACCGCTCAATGTTGAT
ATCTACAAGACAGCCGACTGCGCTCTTTCGCTCATAAACGAGCCCTACTC
CATGTTCTTGGATACTAAAAGTCAAGTTTTTGTGGTGCTGACCCTGATCA
TGGAGATATGTGTCATCGGCGATCTTGCGTACTTTGTGAGAGGCAAGTAT
CTAGATGATCAGTTGCAAAATATGGTCAAACGGCAACACGCACACAACTG
GACCAGTTTGAAAGGAAGGTCAGCGCTAGTGCATAGGCGCGTGATAGACC
GATTGCAGCTGTGGGATTGGAAGCCAGGGAACTTTGAACACTTCACGGCG
GACGGTGCGTTGAACAAAGAGACTCAGTCTCAATTGTTCTACGTTCTTCT
CGAGAAATCAAGACTGCTCCACCGGCGGCCTGTTACCGTCGGCAACAACC
TAGCAATGAGAATAGTCAAAGCTCTAAAGGCTTGCGAACTGGATGGACTG
GAGTTTGAATGCTTTCTCTACAAACAAGTGGACCAATGGCTTGCGTCGTG
GGGTTGTGACCCGACAGAACTCCGTCGAGCGCAAAAGCCAGTACTCCCAT
GGCCATCTCCCGTGGTCGAAAGTTCGCTTCCATTAGGATAA

Coding sequence (CDS) from alignment at NODE_966_length_15672_cov_4.486041:12013..13353-

>Gcaud1073.t1 ID=Gcaud1073.t1|Name=Gcaud1073.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1341bp|location=Sequence derived from alignment at NODE_966_length_15672_cov_4.486041:12013..13353- (Gracilaria caudata M_176_S67 male)
ATGGCTCCCATAGTGCATCAAAGTTCAGACGCTGCCCCGTCGGGCTTCGG
CACCAGCCTAGAACTCGCGCTTATCACCGCCTCCATAGCTCTCACCGTGC
TCATTCAACTGATGCGCGCGAGGCTTCCGGGAAGACTATTCTCCACGCGT
CGCTTTTGGAGAAAGAACTCGCTCCTGTTGGTGTTGTACCTCATCATTGC
GCTTGTGTCCATCGCGTCGCTCACGCTCGGTTGGCTGCGCCGAATCAGCT
TGGAAGCGCTGGTGGCCATCAGCTTCACGCTTGCCTCCACGCTCGCGCAC
ATCGGATCGCGAGTGTTTGTGATCCATCGCGCGCTCAGGTTTTACTGGGG
CGCATATAAAATGGACTACGGTGTTCATGCCGACACCATATGGGATGCAA
ACGAGTTTTGTTACGTTCGCGTCGAAAGCCCATGCCGTTTTGTCATCCGC
GGCGCCGTGCGCCCCGGCAGCAAATGCCTGGGCGACGCTTGCAATGCACG
CATATACTGCGTATATCTGTCCGACAAGCCGCTGTTTTCACCGCTCAGCG
CATTGCTTTCAACGCTGCGCCGACGGCTGCGCTACGATGGCGATACGACA
GAGCCCAAGGTGTACATGCCGCTCCACGCCAGACGTGAAGGTTGTTACCA
GCGCTGCAATGCTCATTTGAAAGCTCACTTGAGATACCACGGAAAACACA
CCATCGATTTGGACACCTCCGCCAATGAACCGCGACCGCTCAATGTTGAT
ATCTACAAGACAGCCGACTGCGCTCTTTCGCTCATAAACGAGCCCTACTC
CATGTTCTTGGATACTAAAAGTCAAGTTTTTGTGGTGCTGACCCTGATCA
TGGAGATATGTGTCATCGGCGATCTTGCGTACTTTGTGAGAGGCAAGTAT
CTAGATGATCAGTTGCAAAATATGGTCAAACGGCAACACGCACACAACTG
GACCAGTTTGAAAGGAAGGTCAGCGCTAGTGCATAGGCGCGTGATAGACC
GATTGCAGCTGTGGGATTGGAAGCCAGGGAACTTTGAACACTTCACGGCG
GACGGTGCGTTGAACAAAGAGACTCAGTCTCAATTGTTCTACGTTCTTCT
CGAGAAATCAAGACTGCTCCACCGGCGGCCTGTTACCGTCGGCAACAACC
TAGCAATGAGAATAGTCAAAGCTCTAAAGGCTTGCGAACTGGATGGACTG
GAGTTTGAATGCTTTCTCTACAAACAAGTGGACCAATGGCTTGCGTCGTG
GGGTTGTGACCCGACAGAACTCCGTCGAGCGCAAAAGCCAGTACTCCCAT
GGCCATCTCCCGTGGTCGAAAGTTCGCTTCCATTAGGATAA