Gcaud10197.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10197.t1
Unique NameGcaud10197.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length852
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1478_length_10346_cov_3.733886contigNODE_1478_length_10346_cov_3.733886:1988..4543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10197Gcaud10197Gracilaria caudata M_176_S67 malegeneNODE_1478_length_10346_cov_3.733886 1988..4543 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10197.t1.start1Gcaud10197.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1478_length_10346_cov_3.733886 1988..1990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10197.t1.CDS1Gcaud10197.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1478_length_10346_cov_3.733886 1988..4543 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10197.t1.exon1Gcaud10197.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1478_length_10346_cov_3.733886 1988..4543 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10197.t1.stop1Gcaud10197.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1478_length_10346_cov_3.733886 4541..4543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10197.t1Gcaud10197.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1478_length_10346_cov_3.733886 1988..4543 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10197.t1 ID=Gcaud10197.t1|Name=Gcaud10197.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=852bp
MRLLREQRTQLRNAVDSLTHQLAAKERQLADLRRQTEALPPDMARAQHQL
EYMRTKVVTLERHNSDLLCRTDYDMAAAYHARKELAVQHNAFANHITTLK
LDLDQIYAERDRLSERVQQLEQRLLDSDVDRCMLSLVSAERDQLEERLQQ
ASSGDMSSIAAENARLKMQTELTHTKRRMETITKKLLEALHHKQQLALEV
QSRLHNEASMLQMFGDLKKETQRLRDERDLAAQNAQQMEQTVGDMKEKAD
KYEAVCEQRDQSIQRADQLQTAYTELANILGCSSVPTEQMDTEQLSSIVN
NARFRLQRSEIERQSTAELAAMRETELDRLEKLLRKERDARANAERRIER
IASKHVALAAAIGHRECPVDAESGLADIFPHVRRLSEVTRSQQETILNLR
QQLADRELAVETSAMEVEKLKHVRRRIKTEANDLENTVHTLEAEVASLSK
ENSAMKGALQSMEQESQQHAGLSEVLRLEKERNAANVRGHGMELAHLRSE
IAQKQVEIEKSASEIEHVHKLVADLQAACEGLQAEKNGLEHEISRKIEEN
DVMTGELDDAVTKIEQLRSDCAELQAELGEQDRIVSQEREELAEQLAERT
ENFAKVEAELNDARRTYIEAAENFEMQTAALTKRLNASQREKQEFKNIVA
AMSSRSGEDGETRLLKAARRCEKLERENESLRKRMGRGDGRGRGTGHEDG
GSVKSDASSFTSVLTATSAGSDDTGFDRVQQLQGLLEEETRVKEDKSKRL
QEAELSLKEMVAEMEKMKGLAKEKEREAEGLRSEMKSIHSRMRKMAHVSM
PRDYEKWLEEDDEDMERLQQVREATRKERDADRRSKGRRKSKGLTMENKG
G*
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spliced messenger RNA

>Gcaud10197.t1 ID=Gcaud10197.t1|Name=Gcaud10197.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2556bp|location=Sequence derived from alignment at NODE_1478_length_10346_cov_3.733886:1988..4543+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTTTTGCGCGAACAACGCACGCAGCTTCGAAACGCCGTCGATTC
TCTCACTCATCAACTTGCCGCCAAGGAGCGTCAGCTTGCCGACCTGCGTC
GCCAAACTGAAGCGCTGCCGCCGGACATGGCGCGTGCGCAGCACCAATTG
GAGTACATGCGCACCAAAGTCGTGACGTTGGAGCGACACAATTCCGACTT
GCTTTGTCGCACCGATTATGATATGGCCGCTGCCTATCACGCCAGAAAGG
AATTGGCTGTGCAGCATAATGCATTTGCCAATCATATCACTACCCTGAAG
CTTGACCTTGACCAAATATACGCCGAGCGAGATCGTTTGTCCGAGCGCGT
GCAGCAGCTTGAGCAGCGTTTACTAGACTCTGACGTGGACAGATGCATGC
TATCTCTCGTTTCTGCGGAGCGCGACCAATTGGAAGAGCGTTTGCAGCAA
GCCTCATCCGGCGACATGTCATCCATCGCCGCCGAGAACGCGCGCCTCAA
GATGCAAACCGAACTCACGCATACAAAACGCCGCATGGAAACCATCACAA
AGAAACTGCTCGAGGCGTTGCATCACAAGCAACAACTTGCTCTCGAAGTG
CAGAGCAGGCTGCATAACGAAGCCAGTATGCTGCAAATGTTTGGCGACCT
CAAGAAAGAAACCCAACGTCTGCGAGATGAACGTGATCTGGCCGCACAAA
ACGCGCAACAAATGGAACAAACCGTGGGTGATATGAAGGAGAAGGCCGAT
AAGTATGAAGCTGTATGTGAGCAAAGAGACCAGTCCATTCAACGTGCAGA
CCAACTTCAGACCGCTTACACTGAATTGGCCAATATTCTTGGTTGTTCAT
CTGTCCCGACCGAGCAGATGGATACTGAACAACTCAGTTCCATTGTGAAC
AACGCTCGATTCCGCCTGCAGCGCAGTGAGATTGAACGGCAGTCAACCGC
CGAACTTGCCGCCATGCGCGAAACAGAGCTCGATCGCTTGGAGAAACTTC
TGCGAAAGGAACGTGATGCGAGAGCTAATGCGGAACGCCGCATCGAACGT
ATTGCTTCCAAACATGTGGCGCTAGCGGCGGCAATCGGGCATCGAGAGTG
CCCAGTGGATGCTGAAAGTGGTCTTGCTGACATCTTTCCACACGTGCGCC
GTTTGTCCGAGGTGACGAGATCGCAGCAGGAAACCATTCTCAACTTGAGG
CAACAGTTGGCCGATCGTGAGCTTGCCGTGGAGACCAGTGCTATGGAGGT
GGAGAAACTGAAGCACGTTCGCCGCAGAATCAAGACAGAGGCCAACGATC
TTGAGAACACGGTGCACACCCTGGAGGCGGAGGTTGCGTCGCTCTCCAAG
GAGAACAGTGCCATGAAGGGCGCACTGCAGAGCATGGAGCAAGAAAGCCA
GCAACATGCGGGACTTTCTGAGGTGCTCCGCCTCGAGAAGGAGCGCAATG
CGGCGAACGTGAGAGGTCATGGCATGGAGTTGGCCCATCTGCGCTCTGAG
ATTGCACAGAAGCAGGTGGAGATTGAGAAGAGCGCCAGTGAAATCGAACA
CGTGCACAAACTGGTGGCAGATTTGCAAGCTGCGTGTGAGGGGTTGCAGG
CTGAGAAGAATGGGTTGGAACATGAGATTTCTAGGAAGATTGAGGAGAAC
GACGTTATGACGGGGGAATTAGACGATGCTGTGACGAAAATCGAACAGCT
TCGCTCGGACTGCGCGGAGTTACAGGCAGAACTGGGCGAACAGGATCGCA
TTGTGTCGCAGGAACGCGAGGAACTTGCAGAGCAACTGGCGGAACGGACG
GAGAACTTTGCAAAGGTGGAGGCGGAATTGAATGACGCGCGAAGGACGTA
TATCGAAGCGGCGGAGAACTTTGAGATGCAAACGGCGGCTTTGACGAAAC
GTCTGAACGCATCGCAGCGAGAGAAACAGGAGTTCAAGAACATTGTGGCG
GCGATGAGCTCACGCTCGGGAGAGGATGGGGAGACACGATTGCTCAAGGC
TGCACGCAGGTGTGAGAAACTGGAACGAGAAAACGAGAGTTTGCGAAAGC
GGATGGGACGTGGCGATGGTAGGGGCAGGGGGACGGGTCATGAGGATGGA
GGCTCTGTGAAGTCGGATGCCAGTTCGTTTACTAGTGTGCTTACTGCGAC
TTCTGCGGGCAGCGATGACACAGGGTTTGATCGTGTGCAGCAGCTGCAGG
GGTTGCTGGAAGAGGAGACGAGAGTGAAAGAGGACAAGTCGAAGCGTCTG
CAGGAGGCGGAACTGAGCTTgaaggaaatggtggcggagatggagaagat
gaagggactggcgaaggagaaggagCGCGAGGCCGAAGGTCTAAGGAGTG
AAATGAAGAGCATTCACTCGCGAATGAGGAAGATGGCGCATGTTTCGATG
CCGAGGGACTACGAGAAATGGCTTGAGGAGGATGATGAGGATATGGAACG
TTTGCAACAGGTGAGAGAGGCGACGAGGAAGGAACGGGATGCGGATCGAA
GGTCGAAGGGACGAAGAAAATCGAAGGGTTTGACGATGGAGAACAAGGGG
GGATAA
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protein sequence of Gcaud10197.t1

>Gcaud10197.t1 ID=Gcaud10197.t1|Name=Gcaud10197.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=852bp
MRLLREQRTQLRNAVDSLTHQLAAKERQLADLRRQTEALPPDMARAQHQL
EYMRTKVVTLERHNSDLLCRTDYDMAAAYHARKELAVQHNAFANHITTLK
LDLDQIYAERDRLSERVQQLEQRLLDSDVDRCMLSLVSAERDQLEERLQQ
ASSGDMSSIAAENARLKMQTELTHTKRRMETITKKLLEALHHKQQLALEV
QSRLHNEASMLQMFGDLKKETQRLRDERDLAAQNAQQMEQTVGDMKEKAD
KYEAVCEQRDQSIQRADQLQTAYTELANILGCSSVPTEQMDTEQLSSIVN
NARFRLQRSEIERQSTAELAAMRETELDRLEKLLRKERDARANAERRIER
IASKHVALAAAIGHRECPVDAESGLADIFPHVRRLSEVTRSQQETILNLR
QQLADRELAVETSAMEVEKLKHVRRRIKTEANDLENTVHTLEAEVASLSK
ENSAMKGALQSMEQESQQHAGLSEVLRLEKERNAANVRGHGMELAHLRSE
IAQKQVEIEKSASEIEHVHKLVADLQAACEGLQAEKNGLEHEISRKIEEN
DVMTGELDDAVTKIEQLRSDCAELQAELGEQDRIVSQEREELAEQLAERT
ENFAKVEAELNDARRTYIEAAENFEMQTAALTKRLNASQREKQEFKNIVA
AMSSRSGEDGETRLLKAARRCEKLERENESLRKRMGRGDGRGRGTGHEDG
GSVKSDASSFTSVLTATSAGSDDTGFDRVQQLQGLLEEETRVKEDKSKRL
QEAELSLKEMVAEMEKMKGLAKEKEREAEGLRSEMKSIHSRMRKMAHVSM
PRDYEKWLEEDDEDMERLQQVREATRKERDADRRSKGRRKSKGLTMENKG
G*
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mRNA from alignment at NODE_1478_length_10346_cov_3.733886:1988..4543+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10197.t1 ID=Gcaud10197.t1|Name=Gcaud10197.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2556bp|location=Sequence derived from alignment at NODE_1478_length_10346_cov_3.733886:1988..4543+ (Gracilaria caudata M_176_S67 male)
ATGCGTCTTTTGCGCGAACAACGCACGCAGCTTCGAAACGCCGTCGATTC TCTCACTCATCAACTTGCCGCCAAGGAGCGTCAGCTTGCCGACCTGCGTC GCCAAACTGAAGCGCTGCCGCCGGACATGGCGCGTGCGCAGCACCAATTG GAGTACATGCGCACCAAAGTCGTGACGTTGGAGCGACACAATTCCGACTT GCTTTGTCGCACCGATTATGATATGGCCGCTGCCTATCACGCCAGAAAGG AATTGGCTGTGCAGCATAATGCATTTGCCAATCATATCACTACCCTGAAG CTTGACCTTGACCAAATATACGCCGAGCGAGATCGTTTGTCCGAGCGCGT GCAGCAGCTTGAGCAGCGTTTACTAGACTCTGACGTGGACAGATGCATGC TATCTCTCGTTTCTGCGGAGCGCGACCAATTGGAAGAGCGTTTGCAGCAA GCCTCATCCGGCGACATGTCATCCATCGCCGCCGAGAACGCGCGCCTCAA GATGCAAACCGAACTCACGCATACAAAACGCCGCATGGAAACCATCACAA AGAAACTGCTCGAGGCGTTGCATCACAAGCAACAACTTGCTCTCGAAGTG CAGAGCAGGCTGCATAACGAAGCCAGTATGCTGCAAATGTTTGGCGACCT CAAGAAAGAAACCCAACGTCTGCGAGATGAACGTGATCTGGCCGCACAAA ACGCGCAACAAATGGAACAAACCGTGGGTGATATGAAGGAGAAGGCCGAT AAGTATGAAGCTGTATGTGAGCAAAGAGACCAGTCCATTCAACGTGCAGA CCAACTTCAGACCGCTTACACTGAATTGGCCAATATTCTTGGTTGTTCAT CTGTCCCGACCGAGCAGATGGATACTGAACAACTCAGTTCCATTGTGAAC AACGCTCGATTCCGCCTGCAGCGCAGTGAGATTGAACGGCAGTCAACCGC CGAACTTGCCGCCATGCGCGAAACAGAGCTCGATCGCTTGGAGAAACTTC TGCGAAAGGAACGTGATGCGAGAGCTAATGCGGAACGCCGCATCGAACGT ATTGCTTCCAAACATGTGGCGCTAGCGGCGGCAATCGGGCATCGAGAGTG CCCAGTGGATGCTGAAAGTGGTCTTGCTGACATCTTTCCACACGTGCGCC GTTTGTCCGAGGTGACGAGATCGCAGCAGGAAACCATTCTCAACTTGAGG CAACAGTTGGCCGATCGTGAGCTTGCCGTGGAGACCAGTGCTATGGAGGT GGAGAAACTGAAGCACGTTCGCCGCAGAATCAAGACAGAGGCCAACGATC TTGAGAACACGGTGCACACCCTGGAGGCGGAGGTTGCGTCGCTCTCCAAG GAGAACAGTGCCATGAAGGGCGCACTGCAGAGCATGGAGCAAGAAAGCCA GCAACATGCGGGACTTTCTGAGGTGCTCCGCCTCGAGAAGGAGCGCAATG CGGCGAACGTGAGAGGTCATGGCATGGAGTTGGCCCATCTGCGCTCTGAG ATTGCACAGAAGCAGGTGGAGATTGAGAAGAGCGCCAGTGAAATCGAACA CGTGCACAAACTGGTGGCAGATTTGCAAGCTGCGTGTGAGGGGTTGCAGG CTGAGAAGAATGGGTTGGAACATGAGATTTCTAGGAAGATTGAGGAGAAC GACGTTATGACGGGGGAATTAGACGATGCTGTGACGAAAATCGAACAGCT TCGCTCGGACTGCGCGGAGTTACAGGCAGAACTGGGCGAACAGGATCGCA TTGTGTCGCAGGAACGCGAGGAACTTGCAGAGCAACTGGCGGAACGGACG GAGAACTTTGCAAAGGTGGAGGCGGAATTGAATGACGCGCGAAGGACGTA TATCGAAGCGGCGGAGAACTTTGAGATGCAAACGGCGGCTTTGACGAAAC GTCTGAACGCATCGCAGCGAGAGAAACAGGAGTTCAAGAACATTGTGGCG GCGATGAGCTCACGCTCGGGAGAGGATGGGGAGACACGATTGCTCAAGGC TGCACGCAGGTGTGAGAAACTGGAACGAGAAAACGAGAGTTTGCGAAAGC GGATGGGACGTGGCGATGGTAGGGGCAGGGGGACGGGTCATGAGGATGGA GGCTCTGTGAAGTCGGATGCCAGTTCGTTTACTAGTGTGCTTACTGCGAC TTCTGCGGGCAGCGATGACACAGGGTTTGATCGTGTGCAGCAGCTGCAGG GGTTGCTGGAAGAGGAGACGAGAGTGAAAGAGGACAAGTCGAAGCGTCTG CAGGAGGCGGAACTGAGCTTgaaggaaatggtggcggagatggagaagat gaagggactggcgaaggagaaggagCGCGAGGCCGAAGGTCTAAGGAGTG AAATGAAGAGCATTCACTCGCGAATGAGGAAGATGGCGCATGTTTCGATG CCGAGGGACTACGAGAAATGGCTTGAGGAGGATGATGAGGATATGGAACG TTTGCAACAGGTGAGAGAGGCGACGAGGAAGGAACGGGATGCGGATCGAA GGTCGAAGGGACGAAGAAAATCGAAGGGTTTGACGATGGAGAACAAGGGG GGATAA
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Coding sequence (CDS) from alignment at NODE_1478_length_10346_cov_3.733886:1988..4543+

>Gcaud10197.t1 ID=Gcaud10197.t1|Name=Gcaud10197.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2556bp|location=Sequence derived from alignment at NODE_1478_length_10346_cov_3.733886:1988..4543+ (Gracilaria caudata M_176_S67 male)
ATGCGTCTTTTGCGCGAACAACGCACGCAGCTTCGAAACGCCGTCGATTC
TCTCACTCATCAACTTGCCGCCAAGGAGCGTCAGCTTGCCGACCTGCGTC
GCCAAACTGAAGCGCTGCCGCCGGACATGGCGCGTGCGCAGCACCAATTG
GAGTACATGCGCACCAAAGTCGTGACGTTGGAGCGACACAATTCCGACTT
GCTTTGTCGCACCGATTATGATATGGCCGCTGCCTATCACGCCAGAAAGG
AATTGGCTGTGCAGCATAATGCATTTGCCAATCATATCACTACCCTGAAG
CTTGACCTTGACCAAATATACGCCGAGCGAGATCGTTTGTCCGAGCGCGT
GCAGCAGCTTGAGCAGCGTTTACTAGACTCTGACGTGGACAGATGCATGC
TATCTCTCGTTTCTGCGGAGCGCGACCAATTGGAAGAGCGTTTGCAGCAA
GCCTCATCCGGCGACATGTCATCCATCGCCGCCGAGAACGCGCGCCTCAA
GATGCAAACCGAACTCACGCATACAAAACGCCGCATGGAAACCATCACAA
AGAAACTGCTCGAGGCGTTGCATCACAAGCAACAACTTGCTCTCGAAGTG
CAGAGCAGGCTGCATAACGAAGCCAGTATGCTGCAAATGTTTGGCGACCT
CAAGAAAGAAACCCAACGTCTGCGAGATGAACGTGATCTGGCCGCACAAA
ACGCGCAACAAATGGAACAAACCGTGGGTGATATGAAGGAGAAGGCCGAT
AAGTATGAAGCTGTATGTGAGCAAAGAGACCAGTCCATTCAACGTGCAGA
CCAACTTCAGACCGCTTACACTGAATTGGCCAATATTCTTGGTTGTTCAT
CTGTCCCGACCGAGCAGATGGATACTGAACAACTCAGTTCCATTGTGAAC
AACGCTCGATTCCGCCTGCAGCGCAGTGAGATTGAACGGCAGTCAACCGC
CGAACTTGCCGCCATGCGCGAAACAGAGCTCGATCGCTTGGAGAAACTTC
TGCGAAAGGAACGTGATGCGAGAGCTAATGCGGAACGCCGCATCGAACGT
ATTGCTTCCAAACATGTGGCGCTAGCGGCGGCAATCGGGCATCGAGAGTG
CCCAGTGGATGCTGAAAGTGGTCTTGCTGACATCTTTCCACACGTGCGCC
GTTTGTCCGAGGTGACGAGATCGCAGCAGGAAACCATTCTCAACTTGAGG
CAACAGTTGGCCGATCGTGAGCTTGCCGTGGAGACCAGTGCTATGGAGGT
GGAGAAACTGAAGCACGTTCGCCGCAGAATCAAGACAGAGGCCAACGATC
TTGAGAACACGGTGCACACCCTGGAGGCGGAGGTTGCGTCGCTCTCCAAG
GAGAACAGTGCCATGAAGGGCGCACTGCAGAGCATGGAGCAAGAAAGCCA
GCAACATGCGGGACTTTCTGAGGTGCTCCGCCTCGAGAAGGAGCGCAATG
CGGCGAACGTGAGAGGTCATGGCATGGAGTTGGCCCATCTGCGCTCTGAG
ATTGCACAGAAGCAGGTGGAGATTGAGAAGAGCGCCAGTGAAATCGAACA
CGTGCACAAACTGGTGGCAGATTTGCAAGCTGCGTGTGAGGGGTTGCAGG
CTGAGAAGAATGGGTTGGAACATGAGATTTCTAGGAAGATTGAGGAGAAC
GACGTTATGACGGGGGAATTAGACGATGCTGTGACGAAAATCGAACAGCT
TCGCTCGGACTGCGCGGAGTTACAGGCAGAACTGGGCGAACAGGATCGCA
TTGTGTCGCAGGAACGCGAGGAACTTGCAGAGCAACTGGCGGAACGGACG
GAGAACTTTGCAAAGGTGGAGGCGGAATTGAATGACGCGCGAAGGACGTA
TATCGAAGCGGCGGAGAACTTTGAGATGCAAACGGCGGCTTTGACGAAAC
GTCTGAACGCATCGCAGCGAGAGAAACAGGAGTTCAAGAACATTGTGGCG
GCGATGAGCTCACGCTCGGGAGAGGATGGGGAGACACGATTGCTCAAGGC
TGCACGCAGGTGTGAGAAACTGGAACGAGAAAACGAGAGTTTGCGAAAGC
GGATGGGACGTGGCGATGGTAGGGGCAGGGGGACGGGTCATGAGGATGGA
GGCTCTGTGAAGTCGGATGCCAGTTCGTTTACTAGTGTGCTTACTGCGAC
TTCTGCGGGCAGCGATGACACAGGGTTTGATCGTGTGCAGCAGCTGCAGG
GGTTGCTGGAAGAGGAGACGAGAGTGAAAGAGGACAAGTCGAAGCGTCTG
CAGGAGGCGGAACTGAGCTTgaaggaaatggtggcggagatggagaagat
gaagggactggcgaaggagaaggagCGCGAGGCCGAAGGTCTAAGGAGTG
AAATGAAGAGCATTCACTCGCGAATGAGGAAGATGGCGCATGTTTCGATG
CCGAGGGACTACGAGAAATGGCTTGAGGAGGATGATGAGGATATGGAACG
TTTGCAACAGGTGAGAGAGGCGACGAGGAAGGAACGGGATGCGGATCGAA
GGTCGAAGGGACGAAGAAAATCGAAGGGTTTGACGATGGAGAACAAGGGG
GGATAA
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