Gcaud10193.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10193.t1
Unique NameGcaud10193.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length103
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_10996_length_512_cov_4.719715contigNODE_10996_length_512_cov_4.719715:2..308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10193Gcaud10193Gracilaria caudata M_176_S67 malegeneNODE_10996_length_512_cov_4.719715 2..308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10193.t1.CDS1Gcaud10193.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_10996_length_512_cov_4.719715 2..308 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10193.t1.exon1Gcaud10193.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_10996_length_512_cov_4.719715 2..308 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10193.t1.start1Gcaud10193.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_10996_length_512_cov_4.719715 306..308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10193.t1Gcaud10193.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_10996_length_512_cov_4.719715 2..308 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10193.t1 ID=Gcaud10193.t1|Name=Gcaud10193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=103bp
MSGRIIVSDRTTNEGGHIDAMYNLANVLAAGAPGVPQDAPSAVKLYERPI
EVGGHHGAMSKLASLLTNGAPGIAVNASRAAELYRRAIEEGGRADAMYYL
ANX
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spliced messenger RNA

>Gcaud10193.t1 ID=Gcaud10193.t1|Name=Gcaud10193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=307bp|location=Sequence derived from alignment at NODE_10996_length_512_cov_4.719715:2..308- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCAATGAGGGTGGACA
CATCGATGCAATGTACAATTTGGCGAACGTGCTTGCAGCAGGAGCCCCAG
GAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTATGAACGTCCCATA
GAAGTGGGCGGACATCATGGAGCCATGTCCAAGTTAGCCAGTCTGCTGAC
AAACGGAGCACCAGGGATAGCCGTGAACGCGTCAAGAGCTGCAGAGCTTT
ATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCCATGTACTACCTA
GCAAACT
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protein sequence of Gcaud10193.t1

>Gcaud10193.t1 ID=Gcaud10193.t1|Name=Gcaud10193.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=103bp
MSGRIIVSDRTTNEGGHIDAMYNLANVLAAGAPGVPQDAPSAVKLYERPI
EVGGHHGAMSKLASLLTNGAPGIAVNASRAAELYRRAIEEGGRADAMYYL
ANX
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mRNA from alignment at NODE_10996_length_512_cov_4.719715:2..308-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10193.t1 ID=Gcaud10193.t1|Name=Gcaud10193.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=307bp|location=Sequence derived from alignment at NODE_10996_length_512_cov_4.719715:2..308- (Gracilaria caudata M_176_S67 male)
ATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCAATGAGGGTGGACA
CATCGATGCAATGTACAATTTGGCGAACGTGCTTGCAGCAGGAGCCCCAG
GAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTATGAACGTCCCATA
GAAGTGGGCGGACATCATGGAGCCATGTCCAAGTTAGCCAGTCTGCTGAC
AAACGGAGCACCAGGGATAGCCGTGAACGCGTCAAGAGCTGCAGAGCTTT
ATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCCATGTACTACCTA
GCAAACT
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Coding sequence (CDS) from alignment at NODE_10996_length_512_cov_4.719715:2..308-

>Gcaud10193.t1 ID=Gcaud10193.t1|Name=Gcaud10193.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=307bp|location=Sequence derived from alignment at NODE_10996_length_512_cov_4.719715:2..308- (Gracilaria caudata M_176_S67 male)
ATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCAATGAGGGTGGACA
CATCGATGCAATGTACAATTTGGCGAACGTGCTTGCAGCAGGAGCCCCAG
GAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTATGAACGTCCCATA
GAAGTGGGCGGACATCATGGAGCCATGTCCAAGTTAGCCAGTCTGCTGAC
AAACGGAGCACCAGGGATAGCCGTGAACGCGTCAAGAGCTGCAGAGCTTT
ATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCCATGTACTACCTA
GCAAACT
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