Gcaud10167.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10167.t1
Unique Name	Gcaud10167.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	516

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_260_length_33639_cov_4.497526	contig	NODE_260_length_33639_cov_4.497526:6398..7945 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5518.FGSG_04507P0
PFAMs	C2,SMP_LBD
Max annot lvl	4751\|Fungi
Evalue	8.4e-58
EggNOG OGs	COG5038@1\|root,KOG1012@2759\|Eukaryota,38DXC@33154\|Opisthokonta,3NYHP@4751\|Fungi,3QNWE@4890\|Ascomycota,216GX@147550\|Sordariomycetes,3TVJ1@5125\|Hypocreales,1FNNP@110618\|Nectriaceae
Description	Synaptotagmin-like mitochondrial-lipid-binding domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10167	Gcaud10167	Gracilaria caudata M_176_S67 male	gene	NODE_260_length_33639_cov_4.497526 6398..7945 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10167.t1.stop1	Gcaud10167.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_260_length_33639_cov_4.497526 6398..6400 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10167.t1.CDS1	Gcaud10167.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_260_length_33639_cov_4.497526 6398..7945 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10167.t1.exon1	Gcaud10167.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_260_length_33639_cov_4.497526 6398..7945 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10167.t1.start1	Gcaud10167.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_260_length_33639_cov_4.497526 7943..7945 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10167.t1	Gcaud10167.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_260_length_33639_cov_4.497526 6398..7945 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_260_length_33639_cov_4.497526:6398..7945-
coding sequence from alignment at NODE_260_length_33639_cov_4.497526:6398..7945-

mRNA sequence

>Gcaud10167.t1 ID=Gcaud10167.t1|Name=Gcaud10167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=516bp
MIWLIIVGAVIYFSYRYLYQDTNPPRQPETQTRVMQKVPSIDVPITTTLS
PRDQIAGVVESLDWCNEITRICWPHIGEIVEDQLEWTIQPLINLHLPKPF
SNFRFVSAKLGKDPLRVDRVIVHRRFRDSIALDLDVHFRGSPNIKMRCAP
LSAPFGIKELRWSGRLSVLLRPLIKTIPLVGAVHGAMIDHPIIEMDFTGI
ANISEFGPLEKVVKNVMKNVTASMIVLPNRIMYKMSDSVDFFDTSFPPLG
VMQVTIQEGRGFKSRKRMGMLKSIPDVFCRATFGLEEMKTEVTWDELNPK
WNTSKSFIISAMSQPFKLKCWDRDILSTDDLLGTMKFTAKELLRVESRWE
KLQEKVRMRIAGDAEILLLSNFFSFSGSEKPVTGRCVISVLVDRARSLPP
NSKAVSCCVEMGSFKKETPPVKRPRDPILGLDPVNPVWNFSCDAVCEDIS
TAHVKLVVLDCGKEIGTININGAEIARTTSRSKQGYFKLNTTATVRAKVI
VRGLVLDTLPDIDRN*

spliced messenger RNA

>Gcaud10167.t1 ID=Gcaud10167.t1|Name=Gcaud10167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:6398..7945- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGGCTCATCATTGTAGGAGCAGTGATATATTTTTCTTACCGTTA
CCTGTACCAGGACACAAACCCACCGCGTCAACCAGAAACCCAGACCAGGG
TTATGCAGAAAGTTCCATCCATAGACGTGCCCATCACTACCACCTTATCT
CCAAGAGACCAAATCGCGGGAGTGGTTGAGAGCTTGGACTGGTGCAACGA
AATCACCAGAATATGTTGGCCGCATATTGGCGAAATTGTCGAAGATCAAC
TGGAATGGACTATTCAGCCTCTGATCAATCTTCATTTACCGAAGCCGTTT
TCAAACTTCCGTTTCGTAAGTGCTAAACTTGGAAAAGATCCCCTTCGAGT
TGATAGAGTAATAGTTCATCGCCGATTCAGGGATTCTATCGCTTTGGATC
TTGACGTACACTTCCGAGGATCACCAAACATAAAGATGAGATGTGCGCCT
CTTTCAGCACCATTTGGAATCAAGGAGTTGCGATGGTCTGGCAGACTTTC
CGTTCTTTTGCGACCACTCATTAAGACTATTCCCTTAGTGGGTGCTGTCC
ATGGAGCCATGATAGATCACCCAATAATTGAGATGGACTTCACGGGCATT
GCCAATATAAGTGAATTTGGTCCGCTGGAAAAGGTGGTCAAAAACGTGAT
GAAGAATGTCACGGCGTCCATGATTGTGCTTCCCAATCGAATCATGTACA
AGATGTCCGATTCTGTGGACTTCTTTGACACCTCGTTTCCCCCTTTGGGC
GTTATGCAGGTGACCATACAAGAAGGTCGCGGATTTAAGTCGAGAAAACG
AATGGGAATGTTGAAGTCAATCCCTGACGTATTCTGTCGAGCAACCTTCG
GGTTGGAGGAGATGAAAACAGAAGTGACGTGGGATGAATTGAACCCGAAA
TGGAACACCAGCAAGTCGTTTATAATCTCGGCCATGTCACAACCGTTCAA
GTTGAAATGCTGGGACAGGGATATACTTTCTACGGATGACCTCCTTGGTA
CGATGAAATTCACTGCAAAGGAACTGCTGCGAGTGGAAAGTAGGTGGGAA
AAGCTGCAAGAAAAGGTGCGAATGAGGATTGCCGGCGATGCCGAAATCCT
GCTTCTGTCAAACTTTTTTTCGTTCTCAGGGTCCGAGAAACCTGTAACTG
GACGATGCGTAATTTCGGTGTTGGTTGACCGGGCAAGGAGTTTACCACCC
AACTCAAAAGCCGTTTCCTGTTGCGTAGAAATGGGGTCTTTCAAGAAGGA
GACGCCACCTGTAAAGAGGCCACGGGATCCAATCCTTGGACTAGACCCCG
TAAATCCGGTATGGAATTTCAGCTGCGACGCTGTCTGTGAAGATATATCA
ACAGCGCATGTGAAGTTAGTGGTGCTCGACTGCGGAAAAGAGATTGGAAC
TATTAACATCAACGGGGCTGAGATTGCAAGAACAACGTCACGGTCTAAGC
AAGGGTATTTTAAGCTGAATACTACGGCAACGGTGCGTGCGAAAGTTATT
GTACGAGGTTTAGTTTTGGACACACTGCCCGATATTGATCGTAACTGA

protein sequence of Gcaud10167.t1

>Gcaud10167.t1 ID=Gcaud10167.t1|Name=Gcaud10167.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=516bp
MIWLIIVGAVIYFSYRYLYQDTNPPRQPETQTRVMQKVPSIDVPITTTLS
PRDQIAGVVESLDWCNEITRICWPHIGEIVEDQLEWTIQPLINLHLPKPF
SNFRFVSAKLGKDPLRVDRVIVHRRFRDSIALDLDVHFRGSPNIKMRCAP
LSAPFGIKELRWSGRLSVLLRPLIKTIPLVGAVHGAMIDHPIIEMDFTGI
ANISEFGPLEKVVKNVMKNVTASMIVLPNRIMYKMSDSVDFFDTSFPPLG
VMQVTIQEGRGFKSRKRMGMLKSIPDVFCRATFGLEEMKTEVTWDELNPK
WNTSKSFIISAMSQPFKLKCWDRDILSTDDLLGTMKFTAKELLRVESRWE
KLQEKVRMRIAGDAEILLLSNFFSFSGSEKPVTGRCVISVLVDRARSLPP
NSKAVSCCVEMGSFKKETPPVKRPRDPILGLDPVNPVWNFSCDAVCEDIS
TAHVKLVVLDCGKEIGTININGAEIARTTSRSKQGYFKLNTTATVRAKVI
VRGLVLDTLPDIDRN*

mRNA from alignment at NODE_260_length_33639_cov_4.497526:6398..7945-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10167.t1 ID=Gcaud10167.t1|Name=Gcaud10167.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:6398..7945- (Gracilaria caudata M_176_S67 male)
ATGATTTGGCTCATCATTGTAGGAGCAGTGATATATTTTTCTTACCGTTA
CCTGTACCAGGACACAAACCCACCGCGTCAACCAGAAACCCAGACCAGGG
TTATGCAGAAAGTTCCATCCATAGACGTGCCCATCACTACCACCTTATCT
CCAAGAGACCAAATCGCGGGAGTGGTTGAGAGCTTGGACTGGTGCAACGA
AATCACCAGAATATGTTGGCCGCATATTGGCGAAATTGTCGAAGATCAAC
TGGAATGGACTATTCAGCCTCTGATCAATCTTCATTTACCGAAGCCGTTT
TCAAACTTCCGTTTCGTAAGTGCTAAACTTGGAAAAGATCCCCTTCGAGT
TGATAGAGTAATAGTTCATCGCCGATTCAGGGATTCTATCGCTTTGGATC
TTGACGTACACTTCCGAGGATCACCAAACATAAAGATGAGATGTGCGCCT
CTTTCAGCACCATTTGGAATCAAGGAGTTGCGATGGTCTGGCAGACTTTC
CGTTCTTTTGCGACCACTCATTAAGACTATTCCCTTAGTGGGTGCTGTCC
ATGGAGCCATGATAGATCACCCAATAATTGAGATGGACTTCACGGGCATT
GCCAATATAAGTGAATTTGGTCCGCTGGAAAAGGTGGTCAAAAACGTGAT
GAAGAATGTCACGGCGTCCATGATTGTGCTTCCCAATCGAATCATGTACA
AGATGTCCGATTCTGTGGACTTCTTTGACACCTCGTTTCCCCCTTTGGGC
GTTATGCAGGTGACCATACAAGAAGGTCGCGGATTTAAGTCGAGAAAACG
AATGGGAATGTTGAAGTCAATCCCTGACGTATTCTGTCGAGCAACCTTCG
GGTTGGAGGAGATGAAAACAGAAGTGACGTGGGATGAATTGAACCCGAAA
TGGAACACCAGCAAGTCGTTTATAATCTCGGCCATGTCACAACCGTTCAA
GTTGAAATGCTGGGACAGGGATATACTTTCTACGGATGACCTCCTTGGTA
CGATGAAATTCACTGCAAAGGAACTGCTGCGAGTGGAAAGTAGGTGGGAA
AAGCTGCAAGAAAAGGTGCGAATGAGGATTGCCGGCGATGCCGAAATCCT
GCTTCTGTCAAACTTTTTTTCGTTCTCAGGGTCCGAGAAACCTGTAACTG
GACGATGCGTAATTTCGGTGTTGGTTGACCGGGCAAGGAGTTTACCACCC
AACTCAAAAGCCGTTTCCTGTTGCGTAGAAATGGGGTCTTTCAAGAAGGA
GACGCCACCTGTAAAGAGGCCACGGGATCCAATCCTTGGACTAGACCCCG
TAAATCCGGTATGGAATTTCAGCTGCGACGCTGTCTGTGAAGATATATCA
ACAGCGCATGTGAAGTTAGTGGTGCTCGACTGCGGAAAAGAGATTGGAAC
TATTAACATCAACGGGGCTGAGATTGCAAGAACAACGTCACGGTCTAAGC
AAGGGTATTTTAAGCTGAATACTACGGCAACGGTGCGTGCGAAAGTTATT
GTACGAGGTTTAGTTTTGGACACACTGCCCGATATTGATCGTAACTGA

Coding sequence (CDS) from alignment at NODE_260_length_33639_cov_4.497526:6398..7945-

>Gcaud10167.t1 ID=Gcaud10167.t1|Name=Gcaud10167.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1548bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:6398..7945- (Gracilaria caudata M_176_S67 male)
ATGATTTGGCTCATCATTGTAGGAGCAGTGATATATTTTTCTTACCGTTA
CCTGTACCAGGACACAAACCCACCGCGTCAACCAGAAACCCAGACCAGGG
TTATGCAGAAAGTTCCATCCATAGACGTGCCCATCACTACCACCTTATCT
CCAAGAGACCAAATCGCGGGAGTGGTTGAGAGCTTGGACTGGTGCAACGA
AATCACCAGAATATGTTGGCCGCATATTGGCGAAATTGTCGAAGATCAAC
TGGAATGGACTATTCAGCCTCTGATCAATCTTCATTTACCGAAGCCGTTT
TCAAACTTCCGTTTCGTAAGTGCTAAACTTGGAAAAGATCCCCTTCGAGT
TGATAGAGTAATAGTTCATCGCCGATTCAGGGATTCTATCGCTTTGGATC
TTGACGTACACTTCCGAGGATCACCAAACATAAAGATGAGATGTGCGCCT
CTTTCAGCACCATTTGGAATCAAGGAGTTGCGATGGTCTGGCAGACTTTC
CGTTCTTTTGCGACCACTCATTAAGACTATTCCCTTAGTGGGTGCTGTCC
ATGGAGCCATGATAGATCACCCAATAATTGAGATGGACTTCACGGGCATT
GCCAATATAAGTGAATTTGGTCCGCTGGAAAAGGTGGTCAAAAACGTGAT
GAAGAATGTCACGGCGTCCATGATTGTGCTTCCCAATCGAATCATGTACA
AGATGTCCGATTCTGTGGACTTCTTTGACACCTCGTTTCCCCCTTTGGGC
GTTATGCAGGTGACCATACAAGAAGGTCGCGGATTTAAGTCGAGAAAACG
AATGGGAATGTTGAAGTCAATCCCTGACGTATTCTGTCGAGCAACCTTCG
GGTTGGAGGAGATGAAAACAGAAGTGACGTGGGATGAATTGAACCCGAAA
TGGAACACCAGCAAGTCGTTTATAATCTCGGCCATGTCACAACCGTTCAA
GTTGAAATGCTGGGACAGGGATATACTTTCTACGGATGACCTCCTTGGTA
CGATGAAATTCACTGCAAAGGAACTGCTGCGAGTGGAAAGTAGGTGGGAA
AAGCTGCAAGAAAAGGTGCGAATGAGGATTGCCGGCGATGCCGAAATCCT
GCTTCTGTCAAACTTTTTTTCGTTCTCAGGGTCCGAGAAACCTGTAACTG
GACGATGCGTAATTTCGGTGTTGGTTGACCGGGCAAGGAGTTTACCACCC
AACTCAAAAGCCGTTTCCTGTTGCGTAGAAATGGGGTCTTTCAAGAAGGA
GACGCCACCTGTAAAGAGGCCACGGGATCCAATCCTTGGACTAGACCCCG
TAAATCCGGTATGGAATTTCAGCTGCGACGCTGTCTGTGAAGATATATCA
ACAGCGCATGTGAAGTTAGTGGTGCTCGACTGCGGAAAAGAGATTGGAAC
TATTAACATCAACGGGGCTGAGATTGCAAGAACAACGTCACGGTCTAAGC
AAGGGTATTTTAAGCTGAATACTACGGCAACGGTGCGTGCGAAAGTTATT
GTACGAGGTTTAGTTTTGGACACACTGCCCGATATTGATCGTAACTGA