Gcaud10107.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10107.t1
Unique Name	Gcaud10107.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	210

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_87_length_53860_cov_4.505235	contig	NODE_87_length_53860_cov_4.505235:31228..31857 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	135651.CBN22421
Preferred name	NAT9
PFAMs	Acetyltransf_3
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K13349
KEGG Pathway	ko04146,map04146
GOs	GO:0005575,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0051276,GO:0071704,GO:0071840,GO:1901564
Evalue	4.88e-43
EggNOG OGs	KOG4135@1\|root,KOG4135@2759\|Eukaryota,39DDF@33154\|Opisthokonta,3BQIU@33208\|Metazoa,3CT76@33213\|Bilateria,40EP3@6231\|Nematoda,1KX4R@119089\|Chromadorea,40VPW@6236\|Rhabditida
Description	transferase activity, transferring acyl groups
COG category	G
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10107	Gcaud10107	Gracilaria caudata M_176_S67 male	gene	NODE_87_length_53860_cov_4.505235 31228..31857 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10107.t1.stop1	Gcaud10107.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_87_length_53860_cov_4.505235 31228..31230 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10107.t1.CDS1	Gcaud10107.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 31228..31857 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10107.t1.exon1	Gcaud10107.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 31228..31857 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10107.t1.start1	Gcaud10107.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_87_length_53860_cov_4.505235 31855..31857 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10107.t1	Gcaud10107.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_87_length_53860_cov_4.505235 31228..31857 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_87_length_53860_cov_4.505235:31228..31857-
coding sequence from alignment at NODE_87_length_53860_cov_4.505235:31228..31857-

mRNA sequence

>Gcaud10107.t1 ID=Gcaud10107.t1|Name=Gcaud10107.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=210bp
MRLNSDTVLSITGSTAVLVPYKEIHVKRYHKWMTSPELLTLTASEPLTLE
EEFENMNSWREDETKMTFIILDRSIGKNYMVGDVNLYLQLDAEDGKRQAE
IEVMIAEPLARRKGLAKTALLMLMAFAVENLKIDIFLAKVLEHNEPSIAL
FTKKLGFQEERKVPVFEEIHYRREVNREYAKKLEALRSELAVESFVSSPY
ADLPDNGGV*

spliced messenger RNA

>Gcaud10107.t1 ID=Gcaud10107.t1|Name=Gcaud10107.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:31228..31857- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATTAAACTCCGACACGGTGCTGTCCATCACTGGTTCAACGGCGGT
TCTTGTTCCGTACAAGGAGATCCACGTGAAGCGATATCACAAATGGATGA
CGAGCCCTGAGCTTCTAACGCTTACAGCCTCTGAGCCTCTGACTCTGGAA
GAAGAATTCGAAAACATGAATTCGTGGCGAGAAGATGAGACAAAGATGAC
GTTCATTATTCTGGACCGCTCCATCGGGAAGAATTACATGGTAGGGGATG
TGAACTTGTACCTCCAGTTGGATGCAGAAGACGGGAAAAGGCAAGCCGAA
ATTGAAGTGATGATTGCCGAACCCCTAGCGCGTAGAAAGGGTCTGGCAAA
AACAGCTTTACTGATGTTGATGGCATTTGCCGTCGAAAACTTGAAAATAG
ATATCTTCCTAGCAAAGGTTCTTGAGCACAACGAACCAAGCATAGCCCTC
TTCACCAAGAAGTTGGGTTTTCAGGAGGAACGCAAGGTACCTGTGTTTGA
AGAAATTCATTATCGCCGTGAAGTCAATCGAGAATATGCAAAGAAGCTTG
AAGCGTTGCGTAGTGAACTCGCAGTGGAGTCCTTCGTTAGTAGCCCATAT
GCGGACCTACCGGACAACGGTGGGGTTTGA

protein sequence of Gcaud10107.t1

>Gcaud10107.t1 ID=Gcaud10107.t1|Name=Gcaud10107.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=210bp
MRLNSDTVLSITGSTAVLVPYKEIHVKRYHKWMTSPELLTLTASEPLTLE
EEFENMNSWREDETKMTFIILDRSIGKNYMVGDVNLYLQLDAEDGKRQAE
IEVMIAEPLARRKGLAKTALLMLMAFAVENLKIDIFLAKVLEHNEPSIAL
FTKKLGFQEERKVPVFEEIHYRREVNREYAKKLEALRSELAVESFVSSPY
ADLPDNGGV*

mRNA from alignment at NODE_87_length_53860_cov_4.505235:31228..31857-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10107.t1 ID=Gcaud10107.t1|Name=Gcaud10107.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=630bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:31228..31857- (Gracilaria caudata M_176_S67 male)
ATGAGATTAAACTCCGACACGGTGCTGTCCATCACTGGTTCAACGGCGGT
TCTTGTTCCGTACAAGGAGATCCACGTGAAGCGATATCACAAATGGATGA
CGAGCCCTGAGCTTCTAACGCTTACAGCCTCTGAGCCTCTGACTCTGGAA
GAAGAATTCGAAAACATGAATTCGTGGCGAGAAGATGAGACAAAGATGAC
GTTCATTATTCTGGACCGCTCCATCGGGAAGAATTACATGGTAGGGGATG
TGAACTTGTACCTCCAGTTGGATGCAGAAGACGGGAAAAGGCAAGCCGAA
ATTGAAGTGATGATTGCCGAACCCCTAGCGCGTAGAAAGGGTCTGGCAAA
AACAGCTTTACTGATGTTGATGGCATTTGCCGTCGAAAACTTGAAAATAG
ATATCTTCCTAGCAAAGGTTCTTGAGCACAACGAACCAAGCATAGCCCTC
TTCACCAAGAAGTTGGGTTTTCAGGAGGAACGCAAGGTACCTGTGTTTGA
AGAAATTCATTATCGCCGTGAAGTCAATCGAGAATATGCAAAGAAGCTTG
AAGCGTTGCGTAGTGAACTCGCAGTGGAGTCCTTCGTTAGTAGCCCATAT
GCGGACCTACCGGACAACGGTGGGGTTTGA

Coding sequence (CDS) from alignment at NODE_87_length_53860_cov_4.505235:31228..31857-

>Gcaud10107.t1 ID=Gcaud10107.t1|Name=Gcaud10107.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=630bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:31228..31857- (Gracilaria caudata M_176_S67 male)
ATGAGATTAAACTCCGACACGGTGCTGTCCATCACTGGTTCAACGGCGGT
TCTTGTTCCGTACAAGGAGATCCACGTGAAGCGATATCACAAATGGATGA
CGAGCCCTGAGCTTCTAACGCTTACAGCCTCTGAGCCTCTGACTCTGGAA
GAAGAATTCGAAAACATGAATTCGTGGCGAGAAGATGAGACAAAGATGAC
GTTCATTATTCTGGACCGCTCCATCGGGAAGAATTACATGGTAGGGGATG
TGAACTTGTACCTCCAGTTGGATGCAGAAGACGGGAAAAGGCAAGCCGAA
ATTGAAGTGATGATTGCCGAACCCCTAGCGCGTAGAAAGGGTCTGGCAAA
AACAGCTTTACTGATGTTGATGGCATTTGCCGTCGAAAACTTGAAAATAG
ATATCTTCCTAGCAAAGGTTCTTGAGCACAACGAACCAAGCATAGCCCTC
TTCACCAAGAAGTTGGGTTTTCAGGAGGAACGCAAGGTACCTGTGTTTGA
AGAAATTCATTATCGCCGTGAAGTCAATCGAGAATATGCAAAGAAGCTTG
AAGCGTTGCGTAGTGAACTCGCAGTGGAGTCCTTCGTTAGTAGCCCATAT
GCGGACCTACCGGACAACGGTGGGGTTTGA