Gcaud10100.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10100.t1
Unique Name	Gcaud10100.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_87_length_53860_cov_4.505235	contig	NODE_87_length_53860_cov_4.505235:17683..19026 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX49946
Max annot lvl	2759\|Eukaryota
Evalue	7.2e-78
EggNOG OGs	2AUPK@1\|root,2RZUJ@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10100	Gcaud10100	Gracilaria caudata M_176_S67 male	gene	NODE_87_length_53860_cov_4.505235 17683..19026 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10100.t1.stop1	Gcaud10100.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_87_length_53860_cov_4.505235 17683..17685 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10100.t1.CDS1	Gcaud10100.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 17683..19026 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10100.t1.exon1	Gcaud10100.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 17683..19026 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10100.t1.start1	Gcaud10100.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_87_length_53860_cov_4.505235 19024..19026 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10100.t1	Gcaud10100.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_87_length_53860_cov_4.505235 17683..19026 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_87_length_53860_cov_4.505235:17683..19026-
coding sequence from alignment at NODE_87_length_53860_cov_4.505235:17683..19026-

mRNA sequence

>Gcaud10100.t1 ID=Gcaud10100.t1|Name=Gcaud10100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=448bp
MAFTGVPLASYGVNFSMFTPQFTSFRPRRTTYARSQAAPRAQLIGMPEGY
GQKSVDSNDHEILLAEMRYSDPSKLPAIVQNNLDQLDEDFYKFLDNKINS
SADLEERDTLRILQGAITEVMKEIFDSLPPEEAKAAMDSSSNDSIDVSSS
DDIAVATYDELINKILEASDMSNPSSLKTSVQAAYPRIDLRMLERLNERI
SSQGADAKALTDLREVITLIMSERIANARESVKAVLSVGDITEMKKQIGT
LARKGKIDDAFILLLQANLEQAQKANAKDAVNVLSHALDHAQTAKDIQLD
PEVRLIRALLRTEDAGARAKMLMESFQSRGSVTLIDGTATSGVAVDGKKF
VIALRKLIEEFGNVDEKFVLKLSQIGEESEAVARKLYDMEDKDVQDLQEE
AFHKRTVSVWDLERYEVEEEIEGRKAAWEGRLGEVPESFNEEGKWQI*

spliced messenger RNA

>Gcaud10100.t1 ID=Gcaud10100.t1|Name=Gcaud10100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:17683..19026- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTTACTGGTGTTCCTCTCGCGTCATACGGCGTTAACTTCTCCAT
GTTCACCCCGCAGTTCACATCATTCCGTCCAAGGCGCACTACCTATGCTC
GTTCTCAGGCCGCCCCGCGGGCTCAACTAATCGGAATGCCTGAAGGATAT
GGACAGAAGAGTGTAGACAGCAACGACCATGAAATCCTCCTCGCCGAGAT
GCGCTATTCGGATCCCTCGAAGCTACCAGCCATTGTACAGAACAATCTGG
ACCAACTTGATGAGGACTTTTACAAATTTCTAGACAATAAGATTAACTCC
TCAGCGGACTTGGAGGAACGTGATACGCTTCGTATATTGCAGGGTGCTAT
CACAGAAGTAATGAAAGAGATTTTTGATTCTCTCCCACCGGAGGAGGCGA
AAGCTGCCATGGATAGCTCATCAAACGATTCGATAGATGTCAGCTCAAGT
GATGATATTGCAGTTGCCACATATGATGAGCTTATCAACAAAATCCTTGA
AGCAAGCGATATGTCAAACCCATCTTCATTGAAGACTTCAGTACAAGCTG
CCTATCCTCGAATCGACCTCCGCATGTTGGAAAGATTGAATGAACGCATT
TCGTCTCAAGGCGCTGATGCTAAAGCGCTCACGGATTTGCGCGAAGTCAT
CACCCTTATCATGAGCGAACGTATTGCAAACGCTCGGGAAAGCGTTAAGG
CTGTTCTTTCTGTGGGTGATATTACGGAGATGAAAAAGCAAATCGGTACT
TTAGCGCGAAAAGGAAAAATAGATGATGCCTTCATTCTTCTGCTGCAAGC
GAATCTTGAACAGGCACAAAAAGCAAATGCCAAAGACGCGGTAAATGTTT
TGTCTCATGCACTAGATCATGCACAAACAGCAAAGGACATTCAGCTTGAC
CCAGAAGTGCGATTGATTCGTGCATTGTTGCGCACAGAAGATGCTGGTGC
AAGAGCTAAAATGTTGATGGAAAGCTTTCAGTCTCGGGGATCCGTCACAC
TTATAGACGGAACAGCTACATCCGGGGTCGCTGTTGATGGGAAGAAATTT
GTCATTGCTCTGAGGAAGCTTATTGAAGAGTTCGGTAACGTAGATGAAAA
GTTTGTCCTGAAGTTGTCACAGATCGGAGAAGAATCGGAGGCTGTTGCGC
GAAAGCTGTACGACATGGAGGACAAAGATGTTCAGGACTTGCAAGAAGAA
GCGTTCCATAAGCGAACTGTGTCTGTGTGGGATTTAGAACGGTACGAAGT
TGAGGAGGAGATCGAAGGACGCAAGGCCGCATGGGAAGGAAGATTAGGGG
AAGTACCAGAGAGTTTCAATGAGGAAGGAAAATGGCAAATCTAA

protein sequence of Gcaud10100.t1

>Gcaud10100.t1 ID=Gcaud10100.t1|Name=Gcaud10100.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=448bp
MAFTGVPLASYGVNFSMFTPQFTSFRPRRTTYARSQAAPRAQLIGMPEGY
GQKSVDSNDHEILLAEMRYSDPSKLPAIVQNNLDQLDEDFYKFLDNKINS
SADLEERDTLRILQGAITEVMKEIFDSLPPEEAKAAMDSSSNDSIDVSSS
DDIAVATYDELINKILEASDMSNPSSLKTSVQAAYPRIDLRMLERLNERI
SSQGADAKALTDLREVITLIMSERIANARESVKAVLSVGDITEMKKQIGT
LARKGKIDDAFILLLQANLEQAQKANAKDAVNVLSHALDHAQTAKDIQLD
PEVRLIRALLRTEDAGARAKMLMESFQSRGSVTLIDGTATSGVAVDGKKF
VIALRKLIEEFGNVDEKFVLKLSQIGEESEAVARKLYDMEDKDVQDLQEE
AFHKRTVSVWDLERYEVEEEIEGRKAAWEGRLGEVPESFNEEGKWQI*

mRNA from alignment at NODE_87_length_53860_cov_4.505235:17683..19026-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10100.t1 ID=Gcaud10100.t1|Name=Gcaud10100.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:17683..19026- (Gracilaria caudata M_176_S67 male)
ATGGCATTTACTGGTGTTCCTCTCGCGTCATACGGCGTTAACTTCTCCAT
GTTCACCCCGCAGTTCACATCATTCCGTCCAAGGCGCACTACCTATGCTC
GTTCTCAGGCCGCCCCGCGGGCTCAACTAATCGGAATGCCTGAAGGATAT
GGACAGAAGAGTGTAGACAGCAACGACCATGAAATCCTCCTCGCCGAGAT
GCGCTATTCGGATCCCTCGAAGCTACCAGCCATTGTACAGAACAATCTGG
ACCAACTTGATGAGGACTTTTACAAATTTCTAGACAATAAGATTAACTCC
TCAGCGGACTTGGAGGAACGTGATACGCTTCGTATATTGCAGGGTGCTAT
CACAGAAGTAATGAAAGAGATTTTTGATTCTCTCCCACCGGAGGAGGCGA
AAGCTGCCATGGATAGCTCATCAAACGATTCGATAGATGTCAGCTCAAGT
GATGATATTGCAGTTGCCACATATGATGAGCTTATCAACAAAATCCTTGA
AGCAAGCGATATGTCAAACCCATCTTCATTGAAGACTTCAGTACAAGCTG
CCTATCCTCGAATCGACCTCCGCATGTTGGAAAGATTGAATGAACGCATT
TCGTCTCAAGGCGCTGATGCTAAAGCGCTCACGGATTTGCGCGAAGTCAT
CACCCTTATCATGAGCGAACGTATTGCAAACGCTCGGGAAAGCGTTAAGG
CTGTTCTTTCTGTGGGTGATATTACGGAGATGAAAAAGCAAATCGGTACT
TTAGCGCGAAAAGGAAAAATAGATGATGCCTTCATTCTTCTGCTGCAAGC
GAATCTTGAACAGGCACAAAAAGCAAATGCCAAAGACGCGGTAAATGTTT
TGTCTCATGCACTAGATCATGCACAAACAGCAAAGGACATTCAGCTTGAC
CCAGAAGTGCGATTGATTCGTGCATTGTTGCGCACAGAAGATGCTGGTGC
AAGAGCTAAAATGTTGATGGAAAGCTTTCAGTCTCGGGGATCCGTCACAC
TTATAGACGGAACAGCTACATCCGGGGTCGCTGTTGATGGGAAGAAATTT
GTCATTGCTCTGAGGAAGCTTATTGAAGAGTTCGGTAACGTAGATGAAAA
GTTTGTCCTGAAGTTGTCACAGATCGGAGAAGAATCGGAGGCTGTTGCGC
GAAAGCTGTACGACATGGAGGACAAAGATGTTCAGGACTTGCAAGAAGAA
GCGTTCCATAAGCGAACTGTGTCTGTGTGGGATTTAGAACGGTACGAAGT
TGAGGAGGAGATCGAAGGACGCAAGGCCGCATGGGAAGGAAGATTAGGGG
AAGTACCAGAGAGTTTCAATGAGGAAGGAAAATGGCAAATCTAA

Coding sequence (CDS) from alignment at NODE_87_length_53860_cov_4.505235:17683..19026-

>Gcaud10100.t1 ID=Gcaud10100.t1|Name=Gcaud10100.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1344bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:17683..19026- (Gracilaria caudata M_176_S67 male)
ATGGCATTTACTGGTGTTCCTCTCGCGTCATACGGCGTTAACTTCTCCAT
GTTCACCCCGCAGTTCACATCATTCCGTCCAAGGCGCACTACCTATGCTC
GTTCTCAGGCCGCCCCGCGGGCTCAACTAATCGGAATGCCTGAAGGATAT
GGACAGAAGAGTGTAGACAGCAACGACCATGAAATCCTCCTCGCCGAGAT
GCGCTATTCGGATCCCTCGAAGCTACCAGCCATTGTACAGAACAATCTGG
ACCAACTTGATGAGGACTTTTACAAATTTCTAGACAATAAGATTAACTCC
TCAGCGGACTTGGAGGAACGTGATACGCTTCGTATATTGCAGGGTGCTAT
CACAGAAGTAATGAAAGAGATTTTTGATTCTCTCCCACCGGAGGAGGCGA
AAGCTGCCATGGATAGCTCATCAAACGATTCGATAGATGTCAGCTCAAGT
GATGATATTGCAGTTGCCACATATGATGAGCTTATCAACAAAATCCTTGA
AGCAAGCGATATGTCAAACCCATCTTCATTGAAGACTTCAGTACAAGCTG
CCTATCCTCGAATCGACCTCCGCATGTTGGAAAGATTGAATGAACGCATT
TCGTCTCAAGGCGCTGATGCTAAAGCGCTCACGGATTTGCGCGAAGTCAT
CACCCTTATCATGAGCGAACGTATTGCAAACGCTCGGGAAAGCGTTAAGG
CTGTTCTTTCTGTGGGTGATATTACGGAGATGAAAAAGCAAATCGGTACT
TTAGCGCGAAAAGGAAAAATAGATGATGCCTTCATTCTTCTGCTGCAAGC
GAATCTTGAACAGGCACAAAAAGCAAATGCCAAAGACGCGGTAAATGTTT
TGTCTCATGCACTAGATCATGCACAAACAGCAAAGGACATTCAGCTTGAC
CCAGAAGTGCGATTGATTCGTGCATTGTTGCGCACAGAAGATGCTGGTGC
AAGAGCTAAAATGTTGATGGAAAGCTTTCAGTCTCGGGGATCCGTCACAC
TTATAGACGGAACAGCTACATCCGGGGTCGCTGTTGATGGGAAGAAATTT
GTCATTGCTCTGAGGAAGCTTATTGAAGAGTTCGGTAACGTAGATGAAAA
GTTTGTCCTGAAGTTGTCACAGATCGGAGAAGAATCGGAGGCTGTTGCGC
GAAAGCTGTACGACATGGAGGACAAAGATGTTCAGGACTTGCAAGAAGAA
GCGTTCCATAAGCGAACTGTGTCTGTGTGGGATTTAGAACGGTACGAAGT
TGAGGAGGAGATCGAAGGACGCAAGGCCGCATGGGAAGGAAGATTAGGGG
AAGTACCAGAGAGTTTCAATGAGGAAGGAAAATGGCAAATCTAA