Gcaud10093.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10093.t1
Unique Name	Gcaud10093.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5922_length_1355_cov_6.178006	contig	NODE_5922_length_1355_cov_6.178006:2..1355 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008802874.1
PFAMs	DKCLD,PUA,TruB_C_2,TruB_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K11131
KEGG Pathway	ko03008,map03008
KEGG Module	M00425
GOs	GO:0000154,GO:0000495,GO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009506,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016556,GO:0016853,GO:0016866,GO:0022613,GO:0030054,GO:0031118,GO:0031120,GO:0031123,GO:0031126,GO:0031429,GO:0031974,GO:0031981,GO:0032991,GO:0033979,GO:0034470,GO:0034641,GO:0034660,GO:0034964,GO:0040031,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055044,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0090304,GO:1901360,GO:1902494,GO:1990481,GO:1990904
Evalue	5.95e-205
EggNOG OGs	COG0130@1\|root,KOG2529@2759\|Eukaryota,37JSV@33090\|Viridiplantae,3GDKJ@35493\|Streptophyta,3KUY4@4447\|Liliopsida
Description	H ACA ribonucleoprotein complex subunit
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko03009,ko03032

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10093	Gcaud10093	Gracilaria caudata M_176_S67 male	gene	NODE_5922_length_1355_cov_6.178006 2..1355 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10093.t1.CDS1	Gcaud10093.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5922_length_1355_cov_6.178006 2..1355 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10093.t1.exon1	Gcaud10093.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5922_length_1355_cov_6.178006 2..1355 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10093.t1	Gcaud10093.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5922_length_1355_cov_6.178006 2..1355 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5922_length_1355_cov_6.178006:2..1355+
coding sequence from alignment at NODE_5922_length_1355_cov_6.178006:2..1355+

mRNA sequence

>Gcaud10093.t1 ID=Gcaud10093.t1|Name=Gcaud10093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=452bp
XDTSKWPLLLRNYDKLNVRSSHFTPIPVGHSPLKRPIQEYIRYGVINLDK
PSNPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ
QGAGKEYIGVLKLHGDLGENPVSKIRRAVEMLTGALFQRPPLISAVKRQL
RIRTIYEAKLLEYDEKKRLAVFWVKCEAGTYIRTLCVHLGYLLGVGGSML
ELRRVRSGIMGEEENMVTMHDVLDAMWVHDNQRDESYLRSVIQPLEALLV
NYKRIVVKDTAVNAICYGAVLMIPGVLRFDDDIEVKEEIVLITTKGEAIA
IAIAEMNTAVIATCDHGRVARIKRVIMERDTYPRAWGLGPVAGKKKGLIR
EGKLDKYGKPNDKTPADWQTTYKELSVPQQDQASVQRTAVAIPENGEVQT
GRNGSTLKSGEPVDEKAPGMDVEDVITPDNKSDKKKKKDKKEKSSKKKRK
RX

spliced messenger RNA

>Gcaud10093.t1 ID=Gcaud10093.t1|Name=Gcaud10093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1354bp|location=Sequence derived from alignment at NODE_5922_length_1355_cov_6.178006:2..1355+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGATACTTCGAAGTGGCCTTTGCTCTTGAGAAACTATGACAAACTAAAC
GTGAGATCATCCCACTTCACTCCCATCCCTGTTGGCCATTCGCCTCTCAA
GAGACCCATACAAGAGTATATTCGCTATGGAGTGATTAATCTGGACAAAC
CGTCCAACCCGTCCTCGCATGAGGTCGTTGCTTGGATCAAGAGAATTCTC
CGCGTTGATAAGACCGGTCATTCAGGCACGCTTGACCCAAAAGTGACGGG
CAATCTAATCGTTTGCATTGACCGCGCTACGCGTCTGGTGAAGTCCCAGC
AGGGCGCAGGTAAGGAATACATTGGAGTACTTAAACTTCACGGTGACTTG
GGAGAGAACCCAGTATCAAAAATCCGAAGAGCAGTTGAGATGCTGACCGG
GGCATTGTTTCAAAGACCGCCTCTCATATCAGCTGTGAAGAGACAGCTTC
GCATCCGAACTATATACGAAGCAAAGCTTCTCGAATACGACGAGAAGAAA
CGCCTCGCTGTGTTTTGGGTGAAATGCGAAGCTGGAACATATATTCGTAC
TCTCTGTGTCCATCTTGGATATCTCTTAGGAGTGGGTGGTAGTATGCTTG
AACTGCGCCGCGTTCGAAGTGGGATCATGGGAGAGGAGGAAAACATGGTT
ACCATGCATGATGTTCTTGATGCAATGTGGGTTCACGATAATCAGCGTGA
TGAGTCATACTTGCGATCTGTCATTCAACCCCTCGAAGCGCTTTTGGTCA
ACTACAAACGTATCGTCGTAAAGGATACTGCCGTCAACGCCATTTGTTAC
GGTGCTGTGCTTATGATCCCAGGTGTACTAAGATTCGATGATGACATCGA
AGTGAAAGAAGAAATCGTCCTGATCACTACGAAAGGTGAAGCTATAGCCA
TAGCAATTGCGGAGATGAATACAGCCGTTATTGCGACGTGTGATCACGGT
CGTGTGGCGCGCATCAAACGTGTTATAATGGAAAGAGACACTTACCCCCG
TGCGTGGGGTCTTGGACCAGTGGCGGGCAAGAAGAAAGGGCTTATTCGAG
AGGGAAAGCTCGACAAGTACGGAAAACCCAATGACAAAACCCCTGCTGAT
TGGCAGACGACTTATAAGGAGTTGAGCGTTCCACAGCAAGACCAAGCTTC
TGTTCAGAGAACGGCTGTAGCCATCCCAGAAAACGGCGAAGTGCAGACTG
GGAGGAATGGTTCAACTTTGAAATCGGGGGAACCCGTCGACGAAAAGGCC
CCTGGTATGGACGTGGAGGATGTGATCACCCCCGACAACAAGAGTGACaa
gaagaagaagaaagacaagaaagaaaaaTCGTCAAAGAAGAAACGAAAGA
GGGA

protein sequence of Gcaud10093.t1

>Gcaud10093.t1 ID=Gcaud10093.t1|Name=Gcaud10093.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=452bp
XDTSKWPLLLRNYDKLNVRSSHFTPIPVGHSPLKRPIQEYIRYGVINLDK
PSNPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQ
QGAGKEYIGVLKLHGDLGENPVSKIRRAVEMLTGALFQRPPLISAVKRQL
RIRTIYEAKLLEYDEKKRLAVFWVKCEAGTYIRTLCVHLGYLLGVGGSML
ELRRVRSGIMGEEENMVTMHDVLDAMWVHDNQRDESYLRSVIQPLEALLV
NYKRIVVKDTAVNAICYGAVLMIPGVLRFDDDIEVKEEIVLITTKGEAIA
IAIAEMNTAVIATCDHGRVARIKRVIMERDTYPRAWGLGPVAGKKKGLIR
EGKLDKYGKPNDKTPADWQTTYKELSVPQQDQASVQRTAVAIPENGEVQT
GRNGSTLKSGEPVDEKAPGMDVEDVITPDNKSDKKKKKDKKEKSSKKKRK
RX

mRNA from alignment at NODE_5922_length_1355_cov_6.178006:2..1355+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10093.t1 ID=Gcaud10093.t1|Name=Gcaud10093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1354bp|location=Sequence derived from alignment at NODE_5922_length_1355_cov_6.178006:2..1355+ (Gracilaria caudata M_176_S67 male)
TTGATACTTCGAAGTGGCCTTTGCTCTTGAGAAACTATGACAAACTAAAC
GTGAGATCATCCCACTTCACTCCCATCCCTGTTGGCCATTCGCCTCTCAA
GAGACCCATACAAGAGTATATTCGCTATGGAGTGATTAATCTGGACAAAC
CGTCCAACCCGTCCTCGCATGAGGTCGTTGCTTGGATCAAGAGAATTCTC
CGCGTTGATAAGACCGGTCATTCAGGCACGCTTGACCCAAAAGTGACGGG
CAATCTAATCGTTTGCATTGACCGCGCTACGCGTCTGGTGAAGTCCCAGC
AGGGCGCAGGTAAGGAATACATTGGAGTACTTAAACTTCACGGTGACTTG
GGAGAGAACCCAGTATCAAAAATCCGAAGAGCAGTTGAGATGCTGACCGG
GGCATTGTTTCAAAGACCGCCTCTCATATCAGCTGTGAAGAGACAGCTTC
GCATCCGAACTATATACGAAGCAAAGCTTCTCGAATACGACGAGAAGAAA
CGCCTCGCTGTGTTTTGGGTGAAATGCGAAGCTGGAACATATATTCGTAC
TCTCTGTGTCCATCTTGGATATCTCTTAGGAGTGGGTGGTAGTATGCTTG
AACTGCGCCGCGTTCGAAGTGGGATCATGGGAGAGGAGGAAAACATGGTT
ACCATGCATGATGTTCTTGATGCAATGTGGGTTCACGATAATCAGCGTGA
TGAGTCATACTTGCGATCTGTCATTCAACCCCTCGAAGCGCTTTTGGTCA
ACTACAAACGTATCGTCGTAAAGGATACTGCCGTCAACGCCATTTGTTAC
GGTGCTGTGCTTATGATCCCAGGTGTACTAAGATTCGATGATGACATCGA
AGTGAAAGAAGAAATCGTCCTGATCACTACGAAAGGTGAAGCTATAGCCA
TAGCAATTGCGGAGATGAATACAGCCGTTATTGCGACGTGTGATCACGGT
CGTGTGGCGCGCATCAAACGTGTTATAATGGAAAGAGACACTTACCCCCG
TGCGTGGGGTCTTGGACCAGTGGCGGGCAAGAAGAAAGGGCTTATTCGAG
AGGGAAAGCTCGACAAGTACGGAAAACCCAATGACAAAACCCCTGCTGAT
TGGCAGACGACTTATAAGGAGTTGAGCGTTCCACAGCAAGACCAAGCTTC
TGTTCAGAGAACGGCTGTAGCCATCCCAGAAAACGGCGAAGTGCAGACTG
GGAGGAATGGTTCAACTTTGAAATCGGGGGAACCCGTCGACGAAAAGGCC
CCTGGTATGGACGTGGAGGATGTGATCACCCCCGACAACAAGAGTGACaa
gaagaagaagaaagacaagaaagaaaaaTCGTCAAAGAAGAAACGAAAGA
GGGA

Coding sequence (CDS) from alignment at NODE_5922_length_1355_cov_6.178006:2..1355+

>Gcaud10093.t1 ID=Gcaud10093.t1|Name=Gcaud10093.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1354bp|location=Sequence derived from alignment at NODE_5922_length_1355_cov_6.178006:2..1355+ (Gracilaria caudata M_176_S67 male)
TTGATACTTCGAAGTGGCCTTTGCTCTTGAGAAACTATGACAAACTAAAC
GTGAGATCATCCCACTTCACTCCCATCCCTGTTGGCCATTCGCCTCTCAA
GAGACCCATACAAGAGTATATTCGCTATGGAGTGATTAATCTGGACAAAC
CGTCCAACCCGTCCTCGCATGAGGTCGTTGCTTGGATCAAGAGAATTCTC
CGCGTTGATAAGACCGGTCATTCAGGCACGCTTGACCCAAAAGTGACGGG
CAATCTAATCGTTTGCATTGACCGCGCTACGCGTCTGGTGAAGTCCCAGC
AGGGCGCAGGTAAGGAATACATTGGAGTACTTAAACTTCACGGTGACTTG
GGAGAGAACCCAGTATCAAAAATCCGAAGAGCAGTTGAGATGCTGACCGG
GGCATTGTTTCAAAGACCGCCTCTCATATCAGCTGTGAAGAGACAGCTTC
GCATCCGAACTATATACGAAGCAAAGCTTCTCGAATACGACGAGAAGAAA
CGCCTCGCTGTGTTTTGGGTGAAATGCGAAGCTGGAACATATATTCGTAC
TCTCTGTGTCCATCTTGGATATCTCTTAGGAGTGGGTGGTAGTATGCTTG
AACTGCGCCGCGTTCGAAGTGGGATCATGGGAGAGGAGGAAAACATGGTT
ACCATGCATGATGTTCTTGATGCAATGTGGGTTCACGATAATCAGCGTGA
TGAGTCATACTTGCGATCTGTCATTCAACCCCTCGAAGCGCTTTTGGTCA
ACTACAAACGTATCGTCGTAAAGGATACTGCCGTCAACGCCATTTGTTAC
GGTGCTGTGCTTATGATCCCAGGTGTACTAAGATTCGATGATGACATCGA
AGTGAAAGAAGAAATCGTCCTGATCACTACGAAAGGTGAAGCTATAGCCA
TAGCAATTGCGGAGATGAATACAGCCGTTATTGCGACGTGTGATCACGGT
CGTGTGGCGCGCATCAAACGTGTTATAATGGAAAGAGACACTTACCCCCG
TGCGTGGGGTCTTGGACCAGTGGCGGGCAAGAAGAAAGGGCTTATTCGAG
AGGGAAAGCTCGACAAGTACGGAAAACCCAATGACAAAACCCCTGCTGAT
TGGCAGACGACTTATAAGGAGTTGAGCGTTCCACAGCAAGACCAAGCTTC
TGTTCAGAGAACGGCTGTAGCCATCCCAGAAAACGGCGAAGTGCAGACTG
GGAGGAATGGTTCAACTTTGAAATCGGGGGAACCCGTCGACGAAAAGGCC
CCTGGTATGGACGTGGAGGATGTGATCACCCCCGACAACAAGAGTGACaa
gaagaagaagaaagacaagaaagaaaaaTCGTCAAAGAAGAAACGAAAGA
GGGA