Gcaud10091.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10091.t1
Unique NameGcaud10091.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1312_length_11502_cov_6.634563contigNODE_1312_length_11502_cov_6.634563:1470..1853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10091Gcaud10091Gracilaria caudata M_176_S67 malegeneNODE_1312_length_11502_cov_6.634563 1470..1853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10091.t1Gcaud10091.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1312_length_11502_cov_6.634563 1470..1853 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10091.t1.start1Gcaud10091.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1312_length_11502_cov_6.634563 1470..1472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10091.t1.CDS1Gcaud10091.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1312_length_11502_cov_6.634563 1470..1526 +
Gcaud10091.t1.CDS2Gcaud10091.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1312_length_11502_cov_6.634563 1594..1688 +
Gcaud10091.t1.CDS3Gcaud10091.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1312_length_11502_cov_6.634563 1763..1853 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10091.t1.exon1Gcaud10091.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1312_length_11502_cov_6.634563 1470..1526 +
Gcaud10091.t1.exon2Gcaud10091.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1312_length_11502_cov_6.634563 1594..1688 +
Gcaud10091.t1.exon3Gcaud10091.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1312_length_11502_cov_6.634563 1763..1853 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10091.t1.intron1Gcaud10091.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1312_length_11502_cov_6.634563 1527..1593 +
Gcaud10091.t1.intron2Gcaud10091.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1312_length_11502_cov_6.634563 1689..1762 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10091.t1.stop1Gcaud10091.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1312_length_11502_cov_6.634563 1851..1853 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10091.t1 ID=Gcaud10091.t1|Name=Gcaud10091.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=81bp
MKGAADKNLKEDAKPASQKKRRAQPGDFEKQVDRIRRDISTIRSNLAAAE
KALDVTGVPYDAPPEQVTDKKDDAETHQQT*
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spliced messenger RNA

>Gcaud10091.t1 ID=Gcaud10091.t1|Name=Gcaud10091.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp|location=Sequence derived from alignment at NODE_1312_length_11502_cov_6.634563:1470..1853+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGAGCTGCGGACAAGAACCTCAAGGAGGACGCAAAACCGGCGTC
GCAAAAGAAGAGACGTGCGCAACCCGGCGACTTTGAGAAACAGGTTGACC
GCATTCGACGCGACATTAGCACCATTCGTTCCAACCTGGCCGCGGCCGAG
AAAGCGTTGGATGTGACCGGCGTGCCGTACGATGCGCCGCCCGAACAGGT
GACCGACAAGAAGGACGACGCGGAAACGCATCAACAAACATGA
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protein sequence of Gcaud10091.t1

>Gcaud10091.t1 ID=Gcaud10091.t1|Name=Gcaud10091.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=81bp
MKGAADKNLKEDAKPASQKKRRAQPGDFEKQVDRIRRDISTIRSNLAAAE
KALDVTGVPYDAPPEQVTDKKDDAETHQQT*
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mRNA from alignment at NODE_1312_length_11502_cov_6.634563:1470..1853+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10091.t1 ID=Gcaud10091.t1|Name=Gcaud10091.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp|location=Sequence derived from alignment at NODE_1312_length_11502_cov_6.634563:1470..1853+ (Gracilaria caudata M_176_S67 male)
ATGAAGGGAGCTGCGGACAAGAACCTCAAGGAGGACGCAAAACCGGCGTC
GCAAAAGGTACGTGCGCCCGCTTTCACTCCTCTCTGCGGCTCGTTTTTGG
AAGCTGACGGCTGTTTTTTTGTAGAAGAGACGTGCGCAACCCGGCGACTT
TGAGAAACAGGTTGACCGCATTCGACGCGACATTAGCACCATTCGTTCCA
ACCTGGCCGCGGCCGAGAAGTGAGTGGCCAGTTTTTAGTCTTTTGCTTTT
TTTGTTGAGTGCGACTAACGTGTTTGCGTGGCGTTTTGCGAAGAGCGTTG
GATGTGACCGGCGTGCCGTACGATGCGCCGCCCGAACAGGTGACCGACAA
GAAGGACGACGCGGAAACGCATCAACAAACATGA
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Coding sequence (CDS) from alignment at NODE_1312_length_11502_cov_6.634563:1470..1853+

>Gcaud10091.t1 ID=Gcaud10091.t1|Name=Gcaud10091.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=243bp|location=Sequence derived from alignment at NODE_1312_length_11502_cov_6.634563:1470..1853+ (Gracilaria caudata M_176_S67 male)
ATGAAGGGAGCTGCGGACAAGAACCTCAAGGAGGACGCAAAACCGGCGTC
GCAAAAGAAGAGACGTGCGCAACCCGGCGACTTTGAGAAACAGGTTGACC
GCATTCGACGCGACATTAGCACCATTCGTTCCAACCTGGCCGCGGCCGAG
AAAGCGTTGGATGTGACCGGCGTGCCGTACGATGCGCCGCCCGAACAGGT
GACCGACAAGAAGGACGACGCGGAAACGCATCAACAAACATGA
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