Gcaud10012.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10012.t1
Unique Name	Gcaud10012.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_32_length_72862_cov_4.436877	contig	NODE_32_length_72862_cov_4.436877:4138..5109 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO42851
Preferred name	LAS1L
PFAMs	Las1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K16912
GOs	GO:0000460,GO:0000469,GO:0000470,GO:0000478,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0035097,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0046483,GO:0051276,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1902494,GO:1990234,GO:1990904
Evalue	1.19e-18
EggNOG OGs	KOG2425@1\|root,KOG2425@2759\|Eukaryota,38EJV@33154\|Opisthokonta,3BG2M@33208\|Metazoa
Description	Ribosomal biogenesis protein
COG category	S
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10012	Gcaud10012	Gracilaria caudata M_176_S67 male	gene	NODE_32_length_72862_cov_4.436877 4138..5109 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10012.t1.stop1	Gcaud10012.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_32_length_72862_cov_4.436877 4138..4140 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10012.t1.CDS1	Gcaud10012.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 4138..5109 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10012.t1.exon1	Gcaud10012.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 4138..5109 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10012.t1.start1	Gcaud10012.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_32_length_72862_cov_4.436877 5107..5109 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10012.t1	Gcaud10012.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_32_length_72862_cov_4.436877 4138..5109 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_32_length_72862_cov_4.436877:4138..5109-
coding sequence from alignment at NODE_32_length_72862_cov_4.436877:4138..5109-

mRNA sequence

>Gcaud10012.t1 ID=Gcaud10012.t1|Name=Gcaud10012.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
MLTIGDIAQAKARVALYQIRRRGSVPISVLSSVALASQLKNPSPDQYSQR
SSLSMTITRLVNGLTDRLQPRGDGASARSVHKLALELGLPPTLVDIRHQS
CHNLLPRLSALESGAKQALLWLEQFYWKPQHSSLTYQLPRSFVDVMKVFE
NPERTRDGEALEPANVLLEGSDVESQNTNPVVHKMRQIANRLEDTQKRSV
GRVAIVKKRSGGKRWRRCENSDAWKNLSLGLIPGQKKPPPLRKIDMCSGE
SFRTEQNPNDAPHDELVPSELRDGGKAYIPNEESYRPQVRNLTTEEVKKI
ASLTNHFESLVSEQSANSTICRL*

spliced messenger RNA

>Gcaud10012.t1 ID=Gcaud10012.t1|Name=Gcaud10012.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:4138..5109- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAACCATTGGCGATATAGCACAAGCCAAAGCGCGAGTTGCGCTCTA
TCAGATAAGACGCAGGGGGTCAGTTCCGATTTCCGTTCTGTCTAGTGTCG
CGCTTGCATCCCAGCTGAAAAATCCATCCCCTGATCAGTACAGCCAAAGA
TCGAGTCTTTCTATGACAATCACAAGGCTTGTTAACGGGTTAACTGATCG
TCTTCAGCCTCGAGGAGACGGAGCTTCGGCAAGGAGCGTTCATAAGCTTG
CCTTGGAGCTAGGACTCCCCCCGACTCTCGTCGATATTCGTCACCAATCA
TGTCACAATTTATTGCCGCGGCTATCCGCTCTTGAATCAGGTGCGAAGCA
AGCTCTGCTCTGGCTTGAACAATTCTATTGGAAACCGCAACATTCAAGTC
TTACCTATCAGCTACCAAGGTCGTTTGTAGACGTGATGAAAGTTTTTGAA
AACCCGGAGCGAACTCGCGATGGTGAAGCACTCGAGCCTGCCAATGTTTT
GTTGGAGGGCTCAGATGTTGAAAGCCAGAACACTAACCCTGTGGTTCATA
AAATGAGGCAAATCGCAAACAGACTCGAGGACACACAGAAGCGTTCTGTT
GGACGGGTAGCCATAGTAAAGAAAAGATCGGGAGGCAAACGATGGAGACG
ATGTGAGAATTCTGACGCATGGAAGAACCTTTCATTAGGTCTAATTCCTG
GACAAAAGAAACCACCGCCCTTGAGAAAGATTGACATGTGTTCTGGTGAG
TCATTTCGTACAGAGCAAAATCCAAATGATGCGCCTCATGATGAACTTGT
GCCTTCTGAATTACGAGATGGTGGGAAGGCCTATATTCCAAATGAAGAAT
CATATCGACCACAAGTCCGGAATCTAACAACGGAAGAGGTCAAAAAGATA
GCATCTCTAACGAATCACTTCGAGAGTTTGGTTTCAGAACAATCTGCTAA
TTCTACTATTTGTCGGCTTTGA

protein sequence of Gcaud10012.t1

>Gcaud10012.t1 ID=Gcaud10012.t1|Name=Gcaud10012.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MLTIGDIAQAKARVALYQIRRRGSVPISVLSSVALASQLKNPSPDQYSQR
SSLSMTITRLVNGLTDRLQPRGDGASARSVHKLALELGLPPTLVDIRHQS
CHNLLPRLSALESGAKQALLWLEQFYWKPQHSSLTYQLPRSFVDVMKVFE
NPERTRDGEALEPANVLLEGSDVESQNTNPVVHKMRQIANRLEDTQKRSV
GRVAIVKKRSGGKRWRRCENSDAWKNLSLGLIPGQKKPPPLRKIDMCSGE
SFRTEQNPNDAPHDELVPSELRDGGKAYIPNEESYRPQVRNLTTEEVKKI
ASLTNHFESLVSEQSANSTICRL*

mRNA from alignment at NODE_32_length_72862_cov_4.436877:4138..5109-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10012.t1 ID=Gcaud10012.t1|Name=Gcaud10012.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:4138..5109- (Gracilaria caudata M_176_S67 male)
ATGTTAACCATTGGCGATATAGCACAAGCCAAAGCGCGAGTTGCGCTCTA
TCAGATAAGACGCAGGGGGTCAGTTCCGATTTCCGTTCTGTCTAGTGTCG
CGCTTGCATCCCAGCTGAAAAATCCATCCCCTGATCAGTACAGCCAAAGA
TCGAGTCTTTCTATGACAATCACAAGGCTTGTTAACGGGTTAACTGATCG
TCTTCAGCCTCGAGGAGACGGAGCTTCGGCAAGGAGCGTTCATAAGCTTG
CCTTGGAGCTAGGACTCCCCCCGACTCTCGTCGATATTCGTCACCAATCA
TGTCACAATTTATTGCCGCGGCTATCCGCTCTTGAATCAGGTGCGAAGCA
AGCTCTGCTCTGGCTTGAACAATTCTATTGGAAACCGCAACATTCAAGTC
TTACCTATCAGCTACCAAGGTCGTTTGTAGACGTGATGAAAGTTTTTGAA
AACCCGGAGCGAACTCGCGATGGTGAAGCACTCGAGCCTGCCAATGTTTT
GTTGGAGGGCTCAGATGTTGAAAGCCAGAACACTAACCCTGTGGTTCATA
AAATGAGGCAAATCGCAAACAGACTCGAGGACACACAGAAGCGTTCTGTT
GGACGGGTAGCCATAGTAAAGAAAAGATCGGGAGGCAAACGATGGAGACG
ATGTGAGAATTCTGACGCATGGAAGAACCTTTCATTAGGTCTAATTCCTG
GACAAAAGAAACCACCGCCCTTGAGAAAGATTGACATGTGTTCTGGTGAG
TCATTTCGTACAGAGCAAAATCCAAATGATGCGCCTCATGATGAACTTGT
GCCTTCTGAATTACGAGATGGTGGGAAGGCCTATATTCCAAATGAAGAAT
CATATCGACCACAAGTCCGGAATCTAACAACGGAAGAGGTCAAAAAGATA
GCATCTCTAACGAATCACTTCGAGAGTTTGGTTTCAGAACAATCTGCTAA
TTCTACTATTTGTCGGCTTTGA

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:4138..5109-

>Gcaud10012.t1 ID=Gcaud10012.t1|Name=Gcaud10012.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:4138..5109- (Gracilaria caudata M_176_S67 male)
ATGTTAACCATTGGCGATATAGCACAAGCCAAAGCGCGAGTTGCGCTCTA
TCAGATAAGACGCAGGGGGTCAGTTCCGATTTCCGTTCTGTCTAGTGTCG
CGCTTGCATCCCAGCTGAAAAATCCATCCCCTGATCAGTACAGCCAAAGA
TCGAGTCTTTCTATGACAATCACAAGGCTTGTTAACGGGTTAACTGATCG
TCTTCAGCCTCGAGGAGACGGAGCTTCGGCAAGGAGCGTTCATAAGCTTG
CCTTGGAGCTAGGACTCCCCCCGACTCTCGTCGATATTCGTCACCAATCA
TGTCACAATTTATTGCCGCGGCTATCCGCTCTTGAATCAGGTGCGAAGCA
AGCTCTGCTCTGGCTTGAACAATTCTATTGGAAACCGCAACATTCAAGTC
TTACCTATCAGCTACCAAGGTCGTTTGTAGACGTGATGAAAGTTTTTGAA
AACCCGGAGCGAACTCGCGATGGTGAAGCACTCGAGCCTGCCAATGTTTT
GTTGGAGGGCTCAGATGTTGAAAGCCAGAACACTAACCCTGTGGTTCATA
AAATGAGGCAAATCGCAAACAGACTCGAGGACACACAGAAGCGTTCTGTT
GGACGGGTAGCCATAGTAAAGAAAAGATCGGGAGGCAAACGATGGAGACG
ATGTGAGAATTCTGACGCATGGAAGAACCTTTCATTAGGTCTAATTCCTG
GACAAAAGAAACCACCGCCCTTGAGAAAGATTGACATGTGTTCTGGTGAG
TCATTTCGTACAGAGCAAAATCCAAATGATGCGCCTCATGATGAACTTGT
GCCTTCTGAATTACGAGATGGTGGGAAGGCCTATATTCCAAATGAAGAAT
CATATCGACCACAAGTCCGGAATCTAACAACGGAAGAGGTCAAAAAGATA
GCATCTCTAACGAATCACTTCGAGAGTTTGGTTTCAGAACAATCTGCTAA
TTCTACTATTTGTCGGCTTTGA