mRNA_F-serratus_M_contig1.49.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 108 bits (270), Expect = 8.020e-23 Identity = 63/146 (43.15%), Postives = 82/146 (56.16%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWK------ATKASGLLKTKKSRVTRVPALRPRKVTWSTSFSYLGAIRYMLSVKHIILCGYSLA-RLDRVKWPIWLVKLELGDGFNRSV 417
GPS+CLDAF VAL+Q CDG WY ST QLQL SL FCVACR V T+HL +++ TP RL+ A + G +K+ RVPALR RKVTW S LS + + G ++ +D W + L LG F++ +
Sbjct: 26 GPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGETPRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFDQPI 171
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 105 bits (262), Expect = 6.200e-22 Identity = 64/146 (43.84%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWKATKASGLLKTKKSR-VTRVPALRPRKVTWSTSFSYLGAIRYMLSVKHIILCGYSLAR-----LDR-VKWPIWLVKLELGDGFNRSV 417
GPS+CLDA ++AL+Q G+ WYTST+QLQL SL+ C +CR +H + L ++ TP RLW+ T + ++ K R VTRVP +R R VTW A+R M + +SL L R ++WP L L LG GFNRSV
Sbjct: 8 GPSRCLDALIIALNQASGGE-WYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGL---ALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLLGLGPGFNRSV 149
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: D7G241_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G241_ECTSI) HSP 1 Score: 103 bits (258), Expect = 9.760e-22 Identity = 62/142 (43.66%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWKAT------KASGLLKTKKSRV-TRVPALRPRKVTWSTSFSYLGAIRYML--SVKHIILCGYSLARL-DRVKWPIWLVKLELG 396
G S+CL+AF+VALD TCDG+ WY ST QLQL SL C ACRGV T+ L++E+ TP+ LW + +G K +R TRVP PR+V W LG R L +V+ ++ GY + D WP L +L+LG
Sbjct: 8 GDSQCLEAFVVALDLTCDGEKWYASTQQLQLASLDLCKACRGVPTLALSVERSTPEYLWAEAARGPRGRLTGEKKPPAARTRTRVPPFGPRRVMWKLRARELGLARKELWANVQCLLFTGYHNDWVCDGFSWPTGLKRLDLG 149
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 101 bits (252), Expect = 3.000e-21 Identity = 59/138 (42.75%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEK-DTPDRLWKATKAS-GLLKTKKSRVTRVPALRPRKVTWSTSFSYLGAIRYMLSVKHIILCGYSLARLDRVKWPIWLVKLELGDGFN 408
GP +CL+AF VAL+ +CDG WYTST +LQL SLQFCV CR V ++HL + P RLW A+ K+ T VP RPR+VTW L I + + L +D V WP L KL G+GF+
Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERFLVRQDTV-VDDVVWPCRLKKLFFGEGFD 139
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.960e-20 Identity = 63/146 (43.15%), Postives = 85/146 (58.22%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWKATKASGLLKTKKSR-VTRVPALRPRKVTWSTSFSYLGAIRYMLSVKHIILCGYSLAR-----LDR-VKWPIWLVKLELGDGFNRSV 417
GPS+CLDA ++AL+Q G+ WYTST+QLQL SL+ C ACR +H + L ++ TP RLW+ T + ++ K R VTRVP +R R VTW A+R M + +SL L R ++WP L +G GFNRSV
Sbjct: 39 GPSRCLDALIIALNQASGGE-WYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGV---ALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKLTLFGVGPGFNRSV 180
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: D8LCS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS9_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 1.120e-18 Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 7 SKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWKATKASGLLKTKKSRVTRVPALRPRKVTWSTSFSYLGAIRYMLSVKHIILCGYSLARLDRVKWPIWLVKLEL 393
S+CLDA +VAL DG+ WYT T QLQL SL FC ACR V TVHLT++ D P RL G +RVPA RPR VTW+ + L + + +++ G+ L R+ V++ W+ L+L
Sbjct: 83 SRCLDALIVALTNAGDGQGWYTPTTQLQLASLDFCTACRAVPTVHLTVDGDVPARLKAGIDNGG--------ASRVPAFRPRCVTWNKPIAALRGEDDVFADVRVLVLGHGLGRVG-VRFNRWVDGLQL 202
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 3.070e-17 Identity = 56/134 (41.79%), Postives = 79/134 (58.96%), Query Frame = 1
Query: 1 GPSK--CLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWKATKASGLLKTKKSRVTRVPALRPRKVTWS--TSFSYLGAIRYMLSVKHIILCGYSLARLDRVKWPIWLVKLE 390
GP++ CL+A +VAL++TCDGK+WYTST +LQL SL FC+ACR TVHL +++ P RL + A K+ TRVP LR R+VTW+ T+ I M ++++ L+ V WP L +E
Sbjct: 45 GPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPP-HPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTME 177
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: A0A6H5JF56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF56_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 8.040e-17 Identity = 51/90 (56.67%), Postives = 61/90 (67.78%), Query Frame = 1
Query: 1 GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLW--KATKASGLLKTKKSRVTRVPALRPRKVTW 264
G ++CLDAF+VAL+Q+CDGK WYTS LQL SL FCVACR V LT++K TP RLW T +L T VTRVPA+R R+V W
Sbjct: 32 GLNRCLDAFVVALNQSCDGKKWYTSIAGLQLASLAFCVACRNVLAPCLTVDKGTPLRLWCGPCTTPLEVLTT----VTRVPAIRVREVVW 117
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.080e-16 Identity = 49/97 (50.52%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 7 SKCLDAFLVALDQTCDG--KAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWKATKASGLLKTKKSRVTRVPA-LRPRKVTWSTSFSYLG 288
SKCLDAF+VAL+QTCDG K WY STL+LQLVSL+FC ACR V T+H+ +++ TP LW R T + A R RKV F Y G
Sbjct: 39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWSP------------RTTPITAHKRSRKVLEGWQFKYRG 123
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 4.590e-16 Identity = 54/130 (41.54%), Postives = 73/130 (56.15%), Query Frame = 1
Query: 7 SKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIEKDTPDRLWKATKASGLLKTKKSRVTRVPALRPRKVTWS--TSFSYLGAIRYMLSVKHIILCGYSLARLDRVKWPIWLVKLE 390
S CL VAL++TCDGK+WYTST +LQL SL+ C+ACR T+HLT++ TP RL A A K+ TRVP LR R+ TW+ T+ +I + V ++ LD + WP L +E
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSP-HPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIE 262 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1.49.1 >prot_F-serratus_M_contig1.49.1 ID=prot_F-serratus_M_contig1.49.1|Name=mRNA_F-serratus_M_contig1.49.1|organism=Fucus serratus male|type=polypeptide|length=467bp GPSKCLDAFLVALDQTCDGKAWYTSTLQLQLVSLQFCVACRGVHTVHLTIback to top mRNA from alignment at F-serratus_M_contig1:1979242..1980972+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1.49.1 ID=mRNA_F-serratus_M_contig1.49.1|Name=mRNA_F-serratus_M_contig1.49.1|organism=Fucus serratus male|type=mRNA|length=1731bp|location=Sequence derived from alignment at F-serratus_M_contig1:1979242..1980972+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1:1979242..1980972+ >mRNA_F-serratus_M_contig1.49.1 ID=mRNA_F-serratus_M_contig1.49.1|Name=mRNA_F-serratus_M_contig1.49.1|organism=Fucus serratus male|type=CDS|length=2802bp|location=Sequence derived from alignment at F-serratus_M_contig1:1979242..1980972+ (Fucus serratus male)back to top |