mRNA_F-serratus_M_contig1.17.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI) HSP 1 Score: 198 bits (503), Expect = 1.550e-48 Identity = 542/886 (61.17%), Postives = 580/886 (65.46%), Query Frame = 2
Query: 2 MRWKLKAQDWLGVIEAMRAASSVPSRRSVVAGDVGARMVMRRIGA--WAPTEETYALGLEACARVQKRWGFKAALLLIQEMRDAGLDMSLEHYRAAVRACSLTRQLDGVLPLXXXXXXXXXXXXXXXXXXXXXXXTVSKVKRALNLVQXXXXXXXXXXXXXXXXXFRLCGLGGCWAMGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LIRCLADAMLWRRAVGILDDMMNERGVEPDAHCFNAAISACAKAGAWDEAERLVGEMRQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMAERDRAKPNLFAXXXXXXXXXXXXXXXXXXXXXXXMKADGLRMDRMTYGVM----MFLHSRKGEWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFEDMKRSSKTKPDESCYRVMLRVCASVGLAEPALEFLREMPAMGVTPNLNHFKQALKACQRAAS----GGRGSDGLEGVT-------------------QGWEGAEAXXXXXXXXXXXXXXVTAAVAVIPEIFRLIRE-ADVTPDDECYALATMCCRSAGIPDEYGVGAGGEL 2566
MR KL+AQD+LGVIEAMRA+S P R S A V + V R G WAPTEETY L LEAC +V+KRWGFKA L LIQEMRD L++SL HYR AV AC+LTRQL GVLPL VKRAL LVQ RLCGLGGCWA GLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LIRCLAD+MLWRRAVGILDDM+ E V+PDAHCFNAA+ AC+K G W EAERLV MR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RM ER KPNLFA + ++ V +F G+W TFED KR + P+++CY+ MLRVC G A A+E+L+EMPA GV P L+HFKQALKAC+RA S GGRG GWE V AAVA +P I L+RE ++PDD+CY+ A C++AG+ D AG EL
Sbjct: 1 MRRKLEAQDYLGVIEAMRASSRAPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGV--------------AADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVERGGVKPNLFAYNHAMSACVRFSPPYSRRKELHGEGGGQGAVSPTSFCVPANLPVFEAGIPGDW-------------------YSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFACQAVEYLKEMPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSXXXXXXXXXXXXXXXXXXXXGRHGWESG----------------VAAAVAAVPVILELVREMTGLSPDDDCYSSAMRACQNAGMGD-----AGSEL 832
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.010e-31 Identity = 98/224 (43.75%), Postives = 108/224 (48.21%), Query Frame = 2
Query: 2 MRWKLKAQDWLGVIEAMRAASSVPSRRSVVAGDVGARMVMRRIGA--WAPTEETYALGLEACARVQKRWGFKAALLLIQEMRDAGLDMSLEHYRAAVRACSLTRQLDGVLPLXXXXXXXXXXXXXXXXXXXXXXXTVSKV--------------------------------------------KRALNLVQXXXXXXXXXXXXXXXXXFRLCGLGGCWAMGLE 535
MR KL+AQD+LGVIE MRA+S VP R S A V A+ V R G WAPTEETY L LEAC +V+KRWGFKAAL LIQEMR+A L++SL HYR AV AC+LTRQL GVLPL T V KRAL LVQ RLCGLGGCWA GLE
Sbjct: 253 MRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAV-AKQVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLE 475
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A6H5LFN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFN9_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 5.760e-11 Identity = 51/134 (38.06%), Postives = 62/134 (46.27%), Query Frame = 2
Query: 2237 MPAMGVTPNLNHFKQALKACQRAAS----GGRGSDGLEG-------------------VTQGWEGAEAXXXXXXXXXXXXXXVTAAVAVIPEIFRLIREAD-VTPDDECYALATMCCRSAGIPDEYGVGAGGEL 2566
MPA GV P L+HFKQALKAC+RA S GGRG GWE VTAAVA +P I L+RE ++PDD+CY+ A C++AG+ D AG EL
Sbjct: 1 MPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSASRXXXXXXXXXXXXXXXXXXRHGWESG----------------VTAAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGD-----AGSEL 113
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A7S2VXQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VXQ2_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 2.630e-5 Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 2
Query: 1460 LWRRAVGILDDMMNERGVEPDAHCFNAAISACAKAGAWDEAERLVGEMRQ 1609
LW +A+ +L MM E G+EPDA+ ++AAISACA AG W EA +L+ M +
Sbjct: 162 LWMKALDLLQQMMEE-GIEPDAYSYSAAISACAPAGRWKEALKLIKHMER 210
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A835YLF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF2_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 4.790e-5 Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 2
Query: 1436 IRCLADAMLWRRAVGILDDMMNERGVEPDAHCFNAAISACAKAGAWDEAERLV 1594
I LA + W++A+G+L+ M E GV PD C NAAI+ACA AGAW EA L+
Sbjct: 207 ISALARSRKWQQALGVLETM-REAGVRPDTVCLNAAIAACASAGAWSEARHLL 258 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1.17.1 >prot_F-serratus_M_contig1.17.1 ID=prot_F-serratus_M_contig1.17.1|Name=mRNA_F-serratus_M_contig1.17.1|organism=Fucus serratus male|type=polypeptide|length=865bp MRWKLKAQDWLGVIEAMRAASSVPSRRSVVAGDVGARMVMRRIGAWAPTEback to top mRNA from alignment at F-serratus_M_contig1:448110..470911- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1.17.1 ID=mRNA_F-serratus_M_contig1.17.1|Name=mRNA_F-serratus_M_contig1.17.1|organism=Fucus serratus male|type=mRNA|length=22802bp|location=Sequence derived from alignment at F-serratus_M_contig1:448110..470911- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1:448110..470911- >mRNA_F-serratus_M_contig1.17.1 ID=mRNA_F-serratus_M_contig1.17.1|Name=mRNA_F-serratus_M_contig1.17.1|organism=Fucus serratus male|type=CDS|length=5190bp|location=Sequence derived from alignment at F-serratus_M_contig1:448110..470911- (Fucus serratus male)back to top |