prot_F-serratus_M_contig1.17.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1.17.1
Unique Nameprot_F-serratus_M_contig1.17.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length865
Homology
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 3.810e-49
Identity = 542/886 (61.17%), Postives = 580/886 (65.46%), Query Frame = 0
Query:    1 MRWKLKAQDWLGVIEAMRAASSVPSRRSVVAGDVGARMVMRRIGA--WAPTEETYALGLEACARVQKRWGFKAALLLIQEMRDAGLDMSLEHYRAAVRACSLTRQLDGVLPLXXXXXXXXXXXXXXXXXXXXXXXTVSKVKRALNLVQXXXXXXXXXXXXXXXXXFRLCGLGGCWAMGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LIRCLADAMLWRRAVGILDDMMNERGVEPDAHCFNAAISACAKAGAWDEAERLVGEMRQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMAERDRAKPNLFAXXXXXXXXXXXXXXXXXXXXXXXMKADGLRMDRMTYGVM----MFLHSRKGEWRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFEDMKRSSKTKPDESCYRVMLRVCASVGLAEPALEFLREMPAMGVTPNLNHFKQALKACQRAAS----GGRGSDGLEGVT-------------------QGWEGAEAXXXXXXXXXXXXXXVTAAVAVIPEIFRLIRE-ADVTPDDECYALATMCCRSAGIPDEYGVGAGGEL 855
            MR KL+AQD+LGVIEAMRA+S  P R S  A  V  + V R  G   WAPTEETY L LEAC +V+KRWGFKA L LIQEMRD  L++SL HYR AV AC+LTRQL GVLPL                           VKRAL LVQ                  RLCGLGGCWA GLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LIRCLAD+MLWRRAVGILDDM+ E  V+PDAHCFNAA+ AC+K G W EAERLV  MR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RM ER   KPNLFA                              +   ++ V     +F     G+W                                        TFED KR +   P+++CY+ MLRVC   G A  A+E+L+EMPA GV P L+HFKQALKAC+RA S    GGRG                            GWE                  V AAVA +P I  L+RE   ++PDD+CY+ A   C++AG+ D     AG EL
Sbjct:    1 MRRKLEAQDYLGVIEAMRASSRAPPRLSGGAAAVAKQEVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGV--------------AADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRMVERGGVKPNLFAYNHAMSACVRFSPPYSRRKELHGEGGGQGAVSPTSFCVPANLPVFEAGIPGDW-------------------YSNHALLEALGRGGRWEEAVKTFEDKKRQADRPPEQTCYKTMLRVCERAGFACQAVEYLKEMPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSXXXXXXXXXXXXXXXXXXXXGRHGWESG----------------VAAAVAAVPVILELVREMTGLSPDDDCYSSAMRACQNAGMGD-----AGSEL 832          
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 5.660e-32
Identity = 98/224 (43.75%), Postives = 108/224 (48.21%), Query Frame = 0
Query:    1 MRWKLKAQDWLGVIEAMRAASSVPSRRSVVAGDVGARMVMRRIGA--WAPTEETYALGLEACARVQKRWGFKAALLLIQEMRDAGLDMSLEHYRAAVRACSLTRQLDGVLPLXXXXXXXXXXXXXXXXXXXXXXXTVSKV--------------------------------------------KRALNLVQXXXXXXXXXXXXXXXXXFRLCGLGGCWAMGLE 178
            MR KL+AQD+LGVIE MRA+S VP R S  A  V A+ V R  G   WAPTEETY L LEAC +V+KRWGFKAAL LIQEMR+A L++SL HYR AV AC+LTRQL GVLPL                       T   V                                            KRAL LVQ                  RLCGLGGCWA GLE
Sbjct:  253 MRRKLEAQDYLGVIEVMRASSRVPPRLSGGAAAV-AKQVGRGDGGVGWAPTEETYGLALEACGKVRKRWGFKAALFLIQEMRNANLEISLVHYRGAVTACALTRQLSGVLPLLDEMRDRGVAADVATYDAAISSCTTKNVRTWMGRXXXXXXXXXXXXXXKRLPTELLDHLTSRPYRRTERYAVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLE 475          
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A6H5LFN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFN9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.240e-11
Identity = 51/134 (38.06%), Postives = 62/134 (46.27%), Query Frame = 0
Query:  746 MPAMGVTPNLNHFKQALKACQRAAS----GGRGSDGLEG-------------------VTQGWEGAEAXXXXXXXXXXXXXXVTAAVAVIPEIFRLIREAD-VTPDDECYALATMCCRSAGIPDEYGVGAGGEL 855
            MPA GV P L+HFKQALKAC+RA S    GGRG                            GWE                  VTAAVA +P I  L+RE   ++PDD+CY+ A   C++AG+ D     AG EL
Sbjct:    1 MPAAGVPPTLSHFKQALKACERATSRGLTGGRGDRSTSASRXXXXXXXXXXXXXXXXXXRHGWESG----------------VTAAVAAVPVILELVRETTGLSPDDDCYSSAMRACQNAGMGD-----AGSEL 113          
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A7S2VXQ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VXQ2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.910e-5
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:  487 LWRRAVGILDDMMNERGVEPDAHCFNAAISACAKAGAWDEAERLVGEMRQ 536
            LW +A+ +L  MM E G+EPDA+ ++AAISACA AG W EA +L+  M +
Sbjct:  162 LWMKALDLLQQMMEE-GIEPDAYSYSAAISACAPAGRWKEALKLIKHMER 210          
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Match: A0A835YLF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.340e-5
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0
Query:  479 IRCLADAMLWRRAVGILDDMMNERGVEPDAHCFNAAISACAKAGAWDEAERLV 531
            I  LA +  W++A+G+L+ M  E GV PD  C NAAI+ACA AGAW EA  L+
Sbjct:  207 ISALARSRKWQQALGVLETM-REAGVRPDTVCLNAAIAACASAGAWSEARHLL 258          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.17.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FY15_ECTSI3.810e-4961.17PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0B1_9PHAE5.660e-3243.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LFN9_9PHAE4.240e-1138.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2VXQ2_9STRA1.910e-552.00Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A835YLF2_9STRA3.340e-552.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 194..222
e-value: 0.074
score: 13.3
coord: 264..291
e-value: 7.1E-5
score: 22.8
coord: 580..607
e-value: 1.3
score: 9.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 506..553
e-value: 1.9E-12
score: 47.2
coord: 295..343
e-value: 2.7E-14
score: 53.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 110..168
e-value: 6.1E-11
score: 42.2
coord: 354..412
e-value: 4.7E-7
score: 29.8
coord: 424..481
e-value: 9.9E-11
score: 41.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 473..508
e-value: 1.0E-4
score: 20.2
coord: 298..332
e-value: 7.3E-8
score: 30.1
coord: 510..542
e-value: 1.1E-6
score: 26.4
coord: 264..296
e-value: 1.7E-7
score: 29.0
coord: 403..437
e-value: 1.2E-5
score: 23.2
coord: 333..366
e-value: 1.8E-5
score: 22.6
coord: 158..191
e-value: 4.1E-4
score: 18.3
coord: 616..648
e-value: 4.7E-6
score: 24.4
coord: 438..472
e-value: 2.6E-4
score: 19.0
coord: 685..720
e-value: 5.1E-5
score: 21.2
coord: 544..577
e-value: 2.9E-8
score: 31.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 683..717
score: 9.197
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 507..541
score: 12.649
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 401..435
score: 10.643
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 577..611
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 49..86
score: 6.818
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 226..260
score: 6.259
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 719..753
score: 10.413
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 613..647
score: 10.665
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 11.389
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 296..330
score: 13.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 261..295
score: 11.652
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 191..225
score: 9.482
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 648..682
score: 8.681
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..400
score: 8.857
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 542..576
score: 11.663
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 122..155
score: 7.892
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 156..190
score: 9.35
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 436..470
score: 9.997
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 87..121
score: 8.758
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 471..506
score: 10.26
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 609..679
e-value: 4.1E-11
score: 44.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 135..258
e-value: 2.2E-26
score: 95.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 488..608
e-value: 6.6E-36
score: 126.2
coord: 36..134
e-value: 3.9E-15
score: 58.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 376..487
e-value: 5.1E-30
score: 106.1
coord: 259..375
e-value: 6.2E-36
score: 125.4
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 368..675
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 235..320
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 616..768
e-value: 3.4E-8
score: 33.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 134..235
coord: 70..167
coord: 573..764
coord: 242..444
coord: 421..588

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:448933..470910 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.17.1mRNA_F-serratus_M_contig1.17.1Fucus serratus malemRNAF-serratus_M_contig1 448110..470911 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1.17.1 ID=prot_F-serratus_M_contig1.17.1|Name=mRNA_F-serratus_M_contig1.17.1|organism=Fucus serratus male|type=polypeptide|length=865bp
MRWKLKAQDWLGVIEAMRAASSVPSRRSVVAGDVGARMVMRRIGAWAPTE
ETYALGLEACARVQKRWGFKAALLLIQEMRDAGLDMSLEHYRAAVRACSL
TRQLDGVLPLLDEMRAKGVAPDVATYNAAISSCTVSKVKRALNLVQMMRS
EGIAPTEITYNVVFRLCGLGGCWAMGLELMTMMEDEGIEPTLPHYNSLFM
ALETGERWREAANLFRKMRSRDVRPNALTYGPLIGVLDRCKKRDMAGAVL
KQMLAQSPRDSTKAYNLLLNACAKARKWQYAENLFQEMSEARIEPDMVTY
NTVINALARCGRVKEAMEHVQAMKDQGLSPDVVTFGTLIHACAQSSRREA
ALALFAELVSRGLTPNLEAYKGCIVACQKAGHHQQALDLFEAMSAERVRP
DRVVFNAVIACCSQLMLWRRAVGLLDEMRAKGVDPDEYSYNSAIFACVKA
KQSRQVTMVLARMREDGFNPDVVTYSNLIRCLADAMLWRRAVGILDDMMN
ERGVEPDAHCFNAAISACAKAGAWDEAERLVGEMRQLGLKPDRYTYNSMM
NAYSVAGEWTKALTTLDEMRRSSIKISSMTYSAAIKACDKGMQWERALEL
LDRMAERDRAKPNLFAYNYAMSACVRSNQTDKALALLERMKADGLRMDRM
TYGVMMFLHSRKGEWRECLCLNDQMEKEGIVGDWYSYHAMLVALSNGSRW
DEALSTFEDMKRSSKTKPDESCYRVMLRVCASVGLAEPALEFLREMPAMG
VTPNLNHFKQALKACQRAASGGRGSDGLEGVTQGWEGAEAEAGAGAEVKA
KAKVVTAAVAVIPEIFRLIREADVTPDDECYALATMCCRSAGIPDEYGVG
AGGELASPFLNGDT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long