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Homology
BLAST of mRNA_F-serratus_M_contig1041.430.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 2.180e-19 Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 1 ESLDDEEEQRGVVKKLRWRTEVGWMGPSAIPAGSAPASGS---SSCGGCRGDGFVIPLDIRRRGKVRALAHSLVTDVVEAVLRRC 246
ESLDDEEEQRGVVKKLRWRTEVG PS PA + P + SS G DGFV PLD+RR+ K+R LAH+LV D VEA L +C
Sbjct: 219 ESLDDEEEQRGVVKKLRWRTEVGRTIPSTRPAAARPPASVAPVSSTGD--DDGFVSPLDLRRKAKLRGLAHALVLDTVEAALAQC 301
BLAST of mRNA_F-serratus_M_contig1041.430.1 vs. uniprot
Match: A0A6H5L3J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 5.320e-19 Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 1 ESLDDEEEQRGVVKKLRWRTEVGWMGPSAI------PAGSAPASGSSSCGGCRGDGFVIPLDIRRRGKVRALAHSLVTDVVEAVLRRC 246
ESLDDEEEQRGVVKKLRWRTEVG PS PA AP S S + DGFV PLD+RR+ K+R LAH+LV D VEA L +C
Sbjct: 360 ESLDDEEEQRGVVKKLRWRTEVGRTIPSTRTAAARPPASVAPVSSSGN-----DDGFVSPLDLRRKAKLRGLAHALVLDTVEAALAQC 442
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 93.6 |
Seed ortholog evalue | 9.7e-17 |
Seed eggNOG ortholog | 2880.D7FHG7 |
KEGG ko | ko:K03514,ko:K11700 |
KEGG Pathway | ko03018,map03018 |
KEGG Module | M00393 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141 |
EggNOG free text desc. | RNA uridylyltransferase activity |
EggNOG OGs | COG5260@1,KOG1906@2759 |
EC | 2.7.7.19 |
COG Functional cat. | L |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036 |
Exons | 2 |
Model size | 517 |
Cds size | 516 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928855.965773-CDS-F-serratus_M_contig1041:15856..15933 | 1622928855.965773-CDS-F-serratus_M_contig1041:15856..15933 | Fucus serratus male | CDS | F-serratus_M_contig1041 15857..15933 + |
1690962602.8169534-CDS-F-serratus_M_contig1041:15856..15933 | 1690962602.8169534-CDS-F-serratus_M_contig1041:15856..15933 | Fucus serratus male | CDS | F-serratus_M_contig1041 15857..15933 + |
1622928855.9815376-CDS-F-serratus_M_contig1041:16486..16925 | 1622928855.9815376-CDS-F-serratus_M_contig1041:16486..16925 | Fucus serratus male | CDS | F-serratus_M_contig1041 16487..16925 + |
1690962602.829941-CDS-F-serratus_M_contig1041:16486..16925 | 1690962602.829941-CDS-F-serratus_M_contig1041:16486..16925 | Fucus serratus male | CDS | F-serratus_M_contig1041 16487..16925 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1041.430.1 >prot_F-serratus_M_contig1041.430.1 ID=prot_F-serratus_M_contig1041.430.1|Name=mRNA_F-serratus_M_contig1041.430.1|organism=Fucus serratus male|type=polypeptide|length=172bp
ESLDDEEEQRGVVKKLRWRTEVGWMGPSAIPAGSAPASGSSSCGGCRGDG FVIPLDIRRRGKVRALAHSLVTDVVEAVLRRCVLETTTPLPIPTSKAAAG FKRTADMALSKEAAAAATTLATATADATVAAVAAAPCSVIPAAAFKRAAL SATAKPGAVELLPTCPWPSPAE back to topmRNA from alignment at F-serratus_M_contig1041:15857..16925+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1041.430.1 ID=mRNA_F-serratus_M_contig1041.430.1|Name=mRNA_F-serratus_M_contig1041.430.1|organism=Fucus serratus male|type=mRNA|length=1069bp|location=Sequence derived from alignment at F-serratus_M_contig1041:15857..16925+ (Fucus serratus male) GAGTCGTTGGACGACGAGGAAGAGCAACGGGGCGTGGTGAAGAAGCTGCG
GTGGAGGACGGAAGTAGGTTGGATGGGGTAAGTCGGGGCGGGGGGGTACG
TAAAGAGATACCAGTCGTGGTGCTATAAAAGAGTGGTTGGTACGAAGCTC
AGAGGCCGTCGTGACTGTAGATATGATGTACTCTCTAAATACTGTGGAAA
ATGCTGCTGAGGGTTAGGTGTCATGCGGCACTGAATTTCAAGAGATTGTG
TAGGCGCAGGTTGGACTCTCGAGAAGTTCCACATATTATCACTATTTTTC
TTCGTTTGTGGTTCTCGAGGCGTGCCTTGTAAACGACAAGAGCTGGCGAA
CGTAAGTCGAAAGTGTACAGTACTGTACGATAGTTCTCTAGTGTTCGTCG
CCGATGAGGCGGTGTTCCATCTTGAGACCAAGAAATTCCGGGGCACTGTT
TGGAAAATCCTCTAGTGACGTGTCCGAAGGACTATGTCAGATCTGGAAGC
CGTGCTTTTCTAGTTTTTTCCCACCATTCTCTTTATATCTCCCCGAGGGT
ATTGGCCCTTCCGCGCGGTTCCCTCCATACACACACACACCCCTCCCCCC
GCTACCCCTGCCCCTACCCCCCTACTGCAGACCCAGCGCGATTCCGGCCG
GCAGCGCACCCGCAAGCGGCAGCAGCAGCTGTGGTGGCTGCAGAGGCGAT
GGCTTCGTTATCCCTCTCGATATCCGGCGGCGAGGCAAGGTGCGGGCCCT
GGCGCACTCCTTGGTGACGGACGTCGTTGAGGCCGTTCTCCGCCGGTGCG
TGCTGGAGACAACGACGCCTCTGCCGATACCAACATCAAAGGCAGCAGCG
GGTTTCAAGCGGACAGCGGATATGGCACTGAGCAAGGAGGCTGCTGCTGC
GGCTACGACTTTGGCCACTGCTACTGCGGATGCGACTGTAGCTGCTGTGG
CGGCGGCGCCTTGCAGCGTGATCCCCGCTGCGGCCTTCAAGCGCGCCGCT
CTCAGCGCGACGGCGAAGCCAGGCGCCGTCGAACTTCTTCCAACATGCCC
GTGGCCATCGCCGGCAGAG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1041:15857..16925+ >mRNA_F-serratus_M_contig1041.430.1 ID=mRNA_F-serratus_M_contig1041.430.1|Name=mRNA_F-serratus_M_contig1041.430.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig1041:15857..16925+ (Fucus serratus male) GAGTCGTTGGACGACGAGGAAGAGCAACGGGGCGTGGTGAAGAAGCTGCG GTGGAGGACGGAAGTAGGTTGGATGGGGAGTCGTTGGACGACGAGGAAGA GCAACGGGGCGTGGTGAAGAAGCTGCGGTGGAGGACGGAAGTAGGTTGGA TGGGACCCAGCGCGATTCCGGCCGGCAGCGCACCCGCAAGCGGCAGCAGC AGCTGTGGTGGCTGCAGAGGCGATGGCTTCGTTATCCCTCTCGATATCCG GCGGCGAGGCAAGGTGCGGGCCCTGGCGCACTCCTTGGTGACGGACGTCG TTGAGGCCGTTCTCCGCCGGTGCGTGCTGGAGACAACGACGCCTCTGCCG ATACCAACATCAAAGGCAGCAGCGGGTTTCAAGCGGACAGCGGATATGGC ACTGAGCAAGGAGGCTGCTGCTGCGGCTACGACTTTGGCCACTGCTACTG CGGATGCGACTGTAGCTGCTGTGGCGGCGGCGCCTTGCAGCGTGATCCCC GCTGCGGCCTTCAAGCGCGCCGCTCTCAGCGCGACGGCGAAGCCAGGCGC CGTCGAACTTCTTCCAACATGCCCGTGGCCATCGCCGGCAGAGACCCAGC GCGATTCCGGCCGGCAGCGCACCCGCAAGCGGCAGCAGCAGCTGTGGTGG CTGCAGAGGCGATGGCTTCGTTATCCCTCTCGATATCCGGCGGCGAGGCA AGGTGCGGGCCCTGGCGCACTCCTTGGTGACGGACGTCGTTGAGGCCGTT CTCCGCCGGTGCGTGCTGGAGACAACGACGCCTCTGCCGATACCAACATC AAAGGCAGCAGCGGGTTTCAAGCGGACAGCGGATATGGCACTGAGCAAGG AGGCTGCTGCTGCGGCTACGACTTTGGCCACTGCTACTGCGGATGCGACT GTAGCTGCTGTGGCGGCGGCGCCTTGCAGCGTGATCCCCGCTGCGGCCTT CAAGCGCGCCGCTCTCAGCGCGACGGCGAAGCCAGGCGCCGTCGAACTTC TTCCAACATGCCCGTGGCCATCGCCGGCAGAG back to top
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