mRNA_F-serratus_M_contig1040.427.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: D7FP13_ECTSI (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP13_ECTSI) HSP 1 Score: 190 bits (482), Expect = 1.050e-53 Identity = 108/140 (77.14%), Postives = 117/140 (83.57%), Query Frame = 3 Query: 912 NKMSFFYAQDATS--QGSIKSLTKSCCTAVFPPLA-LQIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 +K S Y + A S + S + +T+ C L QIGVILRDSNGIAQV AITGAKILR+LK+NGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQS+SASALVA Sbjct: 30 SKSSLPYRRSAPSWLKVSAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 169
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: A0A6H5KYF2_9PHAE (Ribosomal_S13_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF2_9PHAE) HSP 1 Score: 188 bits (477), Expect = 5.980e-53 Identity = 103/123 (83.74%), Postives = 109/123 (88.62%), Query Frame = 3 Query: 957 SIKSLTKSCCTAVFPPLA-LQIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 S + +T+ C L QIGVILRDSNGIAQV AITGAKILR+LK+NGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQS+SASALVA Sbjct: 49 SAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVSAITGAKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSASASALVA 171
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: A0A6H5KEX7_9PHAE (Ribosomal_S13_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX7_9PHAE) HSP 1 Score: 187 bits (476), Expect = 1.440e-52 Identity = 102/123 (82.93%), Postives = 110/123 (89.43%), Query Frame = 3 Query: 957 SIKSLTKSCCTAVFPPLA-LQIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 S + +T+ C L QIGVILRDSNGIAQV+AITG+KILR+LK+NGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKY+SSSASALVA Sbjct: 66 SAQEVTEHVCKLAKKGLTPSQIGVILRDSNGIAQVRAITGSKILRVLKANGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYESSSASALVA 188
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: A0A7S2V1V2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1V2_9STRA) HSP 1 Score: 180 bits (456), Expect = 3.490e-50 Identity = 92/103 (89.32%), Postives = 100/103 (97.09%), Query Frame = 3 Query: 1014 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 QIGVILRDSNGIAQV+++TG+K+LRLLK NGLA EIPEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRTNRKLA NWKY+SS+ASALVA Sbjct: 49 QIGVILRDSNGIAQVRSVTGSKVLRLLKKNGLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTNRKLAPNWKYESSTASALVA 151
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: H3G9F0_PHYRM (Ribosomal_S13_N domain-containing protein n=30 Tax=Oomycota TaxID=4762 RepID=H3G9F0_PHYRM) HSP 1 Score: 172 bits (435), Expect = 3.740e-47 Identity = 87/103 (84.47%), Postives = 98/103 (95.15%), Query Frame = 3 Query: 1014 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 QIGVILRDS+GIAQVK++TG+K+LRLLK NGLA E+PEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYR NRKL+ NWKY+S++AS LVA Sbjct: 49 QIGVILRDSHGIAQVKSVTGSKVLRLLKKNGLAPELPEDLYMLIKKAVAVRKHLERNRQDKDSKFRLILIESRIHRLARYYRKNRKLSPNWKYESATASTLVA 151
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: A0A6V1RUJ0_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RUJ0_HETAK) HSP 1 Score: 171 bits (433), Expect = 7.260e-47 Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = 3 Query: 1014 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 QIGV+LRDSNGIAQVK++TG+KILR+LK NGLA EIPEDLYMLIKKAV VRKHLERNR+D D+KFRLILIESRIHRLARYYR NRKLA+NWKY+S +ASALVA Sbjct: 49 QIGVMLRDSNGIAQVKSVTGSKILRILKKNGLAPEIPEDLYMLIKKAVQVRKHLERNRKDHDAKFRLILIESRIHRLARYYRLNRKLASNWKYESDTASALVA 151
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: B7FNY4_PHATC (Predicted protein n=3 Tax=Naviculales TaxID=38748 RepID=B7FNY4_PHATC) HSP 1 Score: 168 bits (426), Expect = 7.370e-46 Identity = 92/140 (65.71%), Postives = 109/140 (77.86%), Query Frame = 3 Query: 903 PFFNKMSFFYAQDATSQGSIKSLTKSCCTAVFPPLALQIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 P + K+S +D + + K LT S QIGVILRDSNGIAQVK +TG K++R+LK+NGLA EIPEDLYMLIKKAV VRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL +NWKY+S++AS +V+ Sbjct: 23 PSWLKVSSADVEDQVCKLAKKGLTPS-----------QIGVILRDSNGIAQVKFVTGQKVVRILKANGLAPEIPEDLYMLIKKAVQVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLPSNWKYESATASTIVS 151
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: A0A7S3GY39_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GY39_9STRA) HSP 1 Score: 168 bits (426), Expect = 7.370e-46 Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = 3 Query: 1014 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 QIGVILRDSNGIAQVK++TG KILR+LK +GLA IPEDLYMLIKKAVAVRKHL+RN++DKDSKFRLILIESRIHRL+RYYRT RKL ANWKYQS++ASALVA Sbjct: 49 QIGVILRDSNGIAQVKSVTGNKILRILKKSGLAPAIPEDLYMLIKKAVAVRKHLDRNKKDKDSKFRLILIESRIHRLSRYYRTARKLDANWKYQSATASALVA 151
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: A0A4D9D0X7_9STRA (Ribosomal_S13_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0X7_9STRA) HSP 1 Score: 167 bits (422), Expect = 8.500e-45 Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 3 Query: 1017 IGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 IGVILRDS GIAQVKA+TG+KILRLLK N LA EIPEDLYMLIKKAVAVRKHLERNR+DKDSKFRLILIESRIHRLARYYRT RKL NWKY+SS+A+++VA Sbjct: 86 IGVILRDSYGIAQVKAVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASIVA 187
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Match: F0YHH5_AURAN (40S ribosomal protein S13 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH5_AURAN) HSP 1 Score: 165 bits (417), Expect = 1.440e-44 Identity = 85/103 (82.52%), Postives = 96/103 (93.20%), Query Frame = 3 Query: 1014 QIGVILRDSNGIAQVKAITGAKILRLLKSNGLAAEIPEDLYMLIKKAVAVRKHLERNRRDKDSKFRLILIESRIHRLARYYRTNRKLAANWKYQSSSASALVA 1322 QIGVILRDS+GI VK++TG+KILRLLK NGLA EIPEDLYMLIKKAV+VRKH+ERNR DKDSKFRLILIESRIHRLARYYR+ RKL A+WKY+S++ASALVA Sbjct: 49 QIGVILRDSSGIPAVKSVTGSKILRLLKKNGLAPEIPEDLYMLIKKAVSVRKHMERNRSDKDSKFRLILIESRIHRLARYYRSTRKLNASWKYESATASALVA 151 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1040.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1040.427.1 >prot_F-serratus_M_contig1040.427.1 ID=prot_F-serratus_M_contig1040.427.1|Name=mRNA_F-serratus_M_contig1040.427.1|organism=Fucus serratus male|type=polypeptide|length=136bp MSFFYAQDATSQGSIKSLTKSCCTAVFPPLALQIGVILRDSNGIAQVKAIback to top mRNA from alignment at F-serratus_M_contig1040:170588..173335- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1040.427.1 ID=mRNA_F-serratus_M_contig1040.427.1|Name=mRNA_F-serratus_M_contig1040.427.1|organism=Fucus serratus male|type=mRNA|length=2748bp|location=Sequence derived from alignment at F-serratus_M_contig1040:170588..173335- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1040:170588..173335- >mRNA_F-serratus_M_contig1040.427.1 ID=mRNA_F-serratus_M_contig1040.427.1|Name=mRNA_F-serratus_M_contig1040.427.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig1040:170588..173335- (Fucus serratus male)back to top |