mRNA_F-serratus_M_contig1040.425.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1040.425.1
Unique NamemRNA_F-serratus_M_contig1040.425.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1040.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1040contigF-serratus_M_contig1040:101390..101729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size282
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.26462-UTR-F-serratus_M_contig1040:101389..1014471622928855.26462-UTR-F-serratus_M_contig1040:101389..101447Fucus serratus maleUTRF-serratus_M_contig1040 101390..101447 +
1690962602.517108-UTR-F-serratus_M_contig1040:101389..1014471690962602.517108-UTR-F-serratus_M_contig1040:101389..101447Fucus serratus maleUTRF-serratus_M_contig1040 101390..101447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.2855155-CDS-F-serratus_M_contig1040:101447..1017291622928855.2855155-CDS-F-serratus_M_contig1040:101447..101729Fucus serratus maleCDSF-serratus_M_contig1040 101448..101729 +
1690962602.5274775-CDS-F-serratus_M_contig1040:101447..1017291690962602.5274775-CDS-F-serratus_M_contig1040:101447..101729Fucus serratus maleCDSF-serratus_M_contig1040 101448..101729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1040.425.1prot_F-serratus_M_contig1040.425.1Fucus serratus malepolypeptideF-serratus_M_contig1040 101448..101729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1040.425.1

>prot_F-serratus_M_contig1040.425.1 ID=prot_F-serratus_M_contig1040.425.1|Name=mRNA_F-serratus_M_contig1040.425.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MDEIDHIATKDNSYADFDDTQKNKPFTEDVSDGMGYTKNKTCAHVACTNL
AVHGMTGTQTTEFCGQHAMGTMVNLTNKIFTHEGCGKSLPFGVD
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mRNA from alignment at F-serratus_M_contig1040:101390..101729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1040.425.1 ID=mRNA_F-serratus_M_contig1040.425.1|Name=mRNA_F-serratus_M_contig1040.425.1|organism=Fucus serratus male|type=mRNA|length=340bp|location=Sequence derived from alignment at F-serratus_M_contig1040:101390..101729+ (Fucus serratus male)
CGCGTTTCGTGCACCGCTGATACCTCTCTACGACAACAATAACTTTTAAT
GGCAAACCATGGATGAGATTGACCACATTGCTACCAAAGATAATAGTTAT
GCAGATTTTGATGACACACAGAAAAACAAGCCTTTCACAGAGGACGTCTC
GGACGGGATGGGCTACACGAAGAACAAGACATGCGCCCATGTGGCCTGCA
CCAACCTAGCCGTGCATGGCATGACGGGTACACAAACGACGGAGTTCTGC
GGTCAGCACGCTATGGGCACGATGGTGAACCTCACAAACAAAATATTCAC
CCATGAAGGCTGCGGCAAAAGTTTGCCGTTCGGAGTGGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1040:101390..101729+

>mRNA_F-serratus_M_contig1040.425.1 ID=mRNA_F-serratus_M_contig1040.425.1|Name=mRNA_F-serratus_M_contig1040.425.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig1040:101390..101729+ (Fucus serratus male)
ATGGATGAGATTGACCACATTGCTACCAAAGATAATAGTTATGCAGATTT
TGATGACACACAGAAAAACAAGCCTTTCACAGAGGACGTCTCGGACGGGA
TGGGCTACACGAAGAACAAGACATGCGCCCATGTGGCCTGCACCAACCTA
GCCGTGCATGGCATGACGGGTACACAAACGACGGAGTTCTGCGGTCAGCA
CGCTATGGGCACGATGGTGAACCTCACAAACAAAATATTCACCCATGAAG
GCTGCGGCAAAAGTTTGCCGTTCGGAGTGGACATGGATGAGATTGACCAC
ATTGCTACCAAAGATAATAGTTATGCAGATTTTGATGACACACAGAAAAA
CAAGCCTTTCACAGAGGACGTCTCGGACGGGATGGGCTACACGAAGAACA
AGACATGCGCCCATGTGGCCTGCACCAACCTAGCCGTGCATGGCATGACG
GGTACACAAACGACGGAGTTCTGCGGTCAGCACGCTATGGGCACGATGGT
GAACCTCACAAACAAAATATTCACCCATGAAGGCTGCGGCAAAAGTTTGC
CGTTCGGAGTGGAC
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