mRNA_F-serratus_M_contig1038.395.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1038.395.1
Unique NamemRNA_F-serratus_M_contig1038.395.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1038.395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1038contigF-serratus_M_contig1038:301643..302062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size393
Cds size291
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1038.395.1prot_F-serratus_M_contig1038.395.1Fucus serratus malepolypeptideF-serratus_M_contig1038 301643..301960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.4061944-CDS-F-serratus_M_contig1038:301642..3019071622928849.4061944-CDS-F-serratus_M_contig1038:301642..301907Fucus serratus maleCDSF-serratus_M_contig1038 301643..301907 +
1690962599.7317247-CDS-F-serratus_M_contig1038:301642..3019071690962599.7317247-CDS-F-serratus_M_contig1038:301642..301907Fucus serratus maleCDSF-serratus_M_contig1038 301643..301907 +
1622928849.4229927-CDS-F-serratus_M_contig1038:301934..3019601622928849.4229927-CDS-F-serratus_M_contig1038:301934..301960Fucus serratus maleCDSF-serratus_M_contig1038 301935..301960 +
1690962599.7405784-CDS-F-serratus_M_contig1038:301934..3019601690962599.7405784-CDS-F-serratus_M_contig1038:301934..301960Fucus serratus maleCDSF-serratus_M_contig1038 301935..301960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.4383318-UTR-F-serratus_M_contig1038:301960..3020621622928849.4383318-UTR-F-serratus_M_contig1038:301960..302062Fucus serratus maleUTRF-serratus_M_contig1038 301961..302062 +
1690962599.750465-UTR-F-serratus_M_contig1038:301960..3020621690962599.750465-UTR-F-serratus_M_contig1038:301960..302062Fucus serratus maleUTRF-serratus_M_contig1038 301961..302062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1038.395.1

>prot_F-serratus_M_contig1038.395.1 ID=prot_F-serratus_M_contig1038.395.1|Name=mRNA_F-serratus_M_contig1038.395.1|organism=Fucus serratus male|type=polypeptide|length=97bp
LWAKRQGRGLLLPQQLKSVAKSQRLKVKARKLRTAAHSTPRTGWSTSKTN
SAEPGAAAIGRLSEWPARECQSTVHGTHQARWSKPIAASHCLKLQI*
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mRNA from alignment at F-serratus_M_contig1038:301643..302062+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1038.395.1 ID=mRNA_F-serratus_M_contig1038.395.1|Name=mRNA_F-serratus_M_contig1038.395.1|organism=Fucus serratus male|type=mRNA|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig1038:301643..302062+ (Fucus serratus male)
CTGTGGGCAAAACGTCAAGGACGAGGCTTGCTTCTTCCCCAGCAGTTGAA
GTCTGTGGCAAAATCCCAGCGGTTGAAAGTGAAGGCAAGAAAATTGCGGA
CTGCTGCGCATAGCACGCCTAGGACGGGATGGTCGACGTCAAAAACAAAT
AGTGCAGAACCCGGGGCTGCTGCAATCGGCCGTCTTTCGGAGTGGCCGGC
ACGTGAATGCCAGAGTACTGTGCACGGCACGCATCAGGCTAGATGGTCAA
AGCCGATAGCCGCAAGTTCAGAGCTGAAGACTACGGAAAGAGGTCATTGT
TTGAAGTTGCAGATATGAAAAGTATGGAGTACTGTGCACAGCACGCACCG
TATGGGATGGCCGACGTTTGCAGCAGGAAGTACAGAACCGAAGACTGCAA
AAAGGGGCCGTCGTCTGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1038:301643..302062+

>mRNA_F-serratus_M_contig1038.395.1 ID=mRNA_F-serratus_M_contig1038.395.1|Name=mRNA_F-serratus_M_contig1038.395.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig1038:301643..302062+ (Fucus serratus male)
CTGTGGGCAAAACGTCAAGGACGAGGCTTGCTTCTTCCCCAGCAGTTGAA
GTCTGTGGCAAAATCCCAGCGGTTGAAAGTGAAGGCAAGAAAATTGCGGA
CTGCTGCGCATAGCACGCCTAGGACGGGATGGTCGACGTCAAAAACAAAT
AGTGCAGAACCCGGGGCTGCTGCAATCGGCCGTCTTTCGGAGTGGCCGGC
ACGTGAATGCCAGAGTACTGTGCACGGCACGCATCAGGCTAGATGGTCAA
AGCCGATAGCCGCAACTGTGGGCAAAACGTCAAGGACGAGGCTTGCTTCT
TCCCCAGCAGTTGAAGTCTGTGGCAAAATCCCAGCGGTTGAAAGTGAAGG
CAAGAAAATTGCGGACTGCTGCGCATAGCACGCCTAGGACGGGATGGTCG
ACGTCAAAAACAAATAGTGCAGAACCCGGGGCTGCTGCAATCGGCCGTCT
TTCGGAGTGGCCGGCACGTGAATGCCAGAGTACTGTGCACGGCACGCATC
AGGCTAGATGGTCAAAGCCGATAGCCGCAAGTCATTGTTTGAAGTTGCAG
ATATGAGTCATTGTTTGAAGTTGCAGATATGA
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