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Homology
BLAST of mRNA_F-serratus_M_contig1036.382.1 vs. uniprot
Match: D7FP74_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP74_ECTSI) HSP 1 Score: 117 bits (293), Expect = 7.430e-24 Identity = 231/339 (68.14%), Postives = 249/339 (73.45%), Query Frame = 1
Query: 79 GNNHRRAFLHGFEVRLFDLVYERATSEQRGPWLRLLLELAADTGDMALLSTLQSAGAEGSIVHLAVRGGLEMLVRDHFERGASVNQRDVNGDCPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGAWVSPFCDVEGCSXXXXXXXXXXXXVVEVLAKCGADLDAATSTGGISLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHLEATLVLLS-------IAPSTVSLRCGAEASXXXXXXXXXXXXIVTALLRHGADVNSSDCPGQPALHRAA 1074
G + + AFL GFE L L+++ AT+EQ WLRL LELAAD + L+S L++AGA GS HLAVR G MLV D +RG S + RD NGD PLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AWVSPF D E CSXXXXXXXXXXXX AK GAD+DAA STG L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX I V+LR G E S +V +LRHGADV+S+DCP QPALHRAA
Sbjct: 3 GRDQQHAFLRGFEPELVKLMFDTATAEQLEAWLRLSLELAADNKHLELISRLENAGAVGSRFHLAVRQGNGMLVADTIKRGESPDARDGNGDAPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWVSPFLDSESCSXXXXXXXXXXXXXXXXXAKHGADMDAAASTGLTLLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANHRNPIIENDVVNLRFGGEPSPLELAACHGHAHVVRTMLRHGADVDSTDCPYQPALHRAA 341
BLAST of mRNA_F-serratus_M_contig1036.382.1 vs. uniprot
Match: D7FP76_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP76_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 3.440e-6 Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = -2
Query: 1872 QQWEVEKMKNLTTKTLKSPQKLSPITPPR-EGK--------KISSRNPST----GTRTPADALDEEENEWNGGSAWDRSTGKSFVS 2090
+QWE+EK+KNLTTKTLKSP K TP R EG+ ++SSR S G+ DALDEEE+EWN AWDRS + V+
Sbjct: 267 EQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSRMTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVA 352
BLAST of mRNA_F-serratus_M_contig1036.382.1 vs. uniprot
Match: A0A6H5JKH0_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH0_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.940e-6 Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = -2
Query: 1872 QQWEVEKMKNLTTKTLKSPQKLSPITPPR-EGK--------KISSRNPST----GTRTPADALDEEENEWNGGSAWDRSTGKSFVS 2090
+QWE+EK+KNLTTKTLKSP K TP R EG+ ++SSR S G+ DALDEEE+EWN AWDRS + V+
Sbjct: 345 EQWEIEKLKNLTTKTLKSPAKQLAPTPTRAEGRHRQAAAAGRMSSRMTSQQQYHGSEYRRDALDEEEDEWNQVGAWDRSGVRKAVA 430
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 118.2 |
Seed ortholog evalue | 1.1e-23 |
Seed eggNOG ortholog | 2880.D7FP74 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | response to abiotic stimulus |
EggNOG OGs | COG0666@1,KOG4177@2759 |
Ec32 ortholog description | Ankyrin repeat-containing domain |
Ec32 ortholog | Ec-08_000580.1 |
COG Functional cat. | G |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 2 |
Model size | 2748 |
Cds size | 1527 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928846.8787773-UTR-F-serratus_M_contig1036:176153..177059 | 1622928846.8787773-UTR-F-serratus_M_contig1036:176153..177059 | Fucus serratus male | UTR | F-serratus_M_contig1036 176154..177059 - |
1690962598.6776175-UTR-F-serratus_M_contig1036:176153..177059 | 1690962598.6776175-UTR-F-serratus_M_contig1036:176153..177059 | Fucus serratus male | UTR | F-serratus_M_contig1036 176154..177059 - |
1622928846.8948658-UTR-F-serratus_M_contig1036:177654..177912 | 1622928846.8948658-UTR-F-serratus_M_contig1036:177654..177912 | Fucus serratus male | UTR | F-serratus_M_contig1036 177655..177912 - |
1690962598.687364-UTR-F-serratus_M_contig1036:177654..177912 | 1690962598.687364-UTR-F-serratus_M_contig1036:177654..177912 | Fucus serratus male | UTR | F-serratus_M_contig1036 177655..177912 - |
1622928846.9261863-UTR-F-serratus_M_contig1036:179439..179496 | 1622928846.9261863-UTR-F-serratus_M_contig1036:179439..179496 | Fucus serratus male | UTR | F-serratus_M_contig1036 179440..179496 - |
1690962598.7081017-UTR-F-serratus_M_contig1036:179439..179496 | 1690962598.7081017-UTR-F-serratus_M_contig1036:179439..179496 | Fucus serratus male | UTR | F-serratus_M_contig1036 179440..179496 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928846.9101882-CDS-F-serratus_M_contig1036:177912..179439 | 1622928846.9101882-CDS-F-serratus_M_contig1036:177912..179439 | Fucus serratus male | CDS | F-serratus_M_contig1036 177913..179439 - |
1690962598.6965067-CDS-F-serratus_M_contig1036:177912..179439 | 1690962598.6965067-CDS-F-serratus_M_contig1036:177912..179439 | Fucus serratus male | CDS | F-serratus_M_contig1036 177913..179439 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1036.382.1 >prot_F-serratus_M_contig1036.382.1 ID=prot_F-serratus_M_contig1036.382.1|Name=mRNA_F-serratus_M_contig1036.382.1|organism=Fucus serratus male|type=polypeptide|length=509bp
MANKNDSGNNHRRAFLHGFEVRLFDLVYERATSEQRGPWLRLLLELAADT GDMALLSTLQSAGAEGSIVHLAVRGGLEMLVRDHFERGASVNQRDVNGDC PLHLAAAKGNERMVRVLLSCGADENAQDMKRRTPLHLAASHGHAETAAAL LDGGAWVSPFCDVEGCSPLELAVHHGHLHVVEVLAKCGADLDAATSTGGI SLQVAASRGMVGLIESLVRAGARPNVRDADGSTALHVAAERGLCDVLRTL VTQGADPAQFNNAGRTPLSLAAGAGHLEATLVLLSIAPSTVSLRCGAEAS PLELAAEAGHVAIVTALLRHGADVNSSDCPGQPALHRAADRDRVGCLREL IRYGANLDARDADAETALHHAATFDRAGAIEELARAGADIEAIGEEGYTP LHLACRFLKQNAVAALLRSGARVLTLDEYGYTPLHSAAANGAKAGTHAVV DLLLTWGADPYAVTAGGYTAADIIGHYEGGEELLVEDAERIRRMLLSQER GVPTGADP* back to topmRNA from alignment at F-serratus_M_contig1036:176154..179496- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1036.382.1 ID=mRNA_F-serratus_M_contig1036.382.1|Name=mRNA_F-serratus_M_contig1036.382.1|organism=Fucus serratus male|type=mRNA|length=3343bp|location=Sequence derived from alignment at F-serratus_M_contig1036:176154..179496- (Fucus serratus male) GGGTGATAGAATCGTAACCCGTCTTCAAGACGGCCAGAGAACCACAAGAC
TACAAATATGGCGAACAAAAACGATAGCGGAAATAATCACCGTCGTGCAT
TCCTACACGGATTTGAGGTTCGACTTTTCGACCTGGTGTACGAACGCGCC
ACCTCGGAGCAGCGTGGCCCATGGCTGAGACTCTTGCTTGAGCTAGCTGC
AGACACGGGCGACATGGCACTCCTATCAACGCTTCAGAGCGCCGGCGCCG
AGGGGAGCATCGTGCACCTGGCCGTAAGAGGCGGCCTCGAGATGCTCGTA
CGTGACCACTTCGAGCGCGGCGCCTCTGTTAACCAGCGTGACGTCAACGG
CGACTGTCCTCTTCATCTAGCCGCAGCCAAGGGTAATGAGCGGATGGTTC
GGGTGCTCCTTTCGTGCGGGGCAGACGAAAACGCACAGGACATGAAGCGC
CGCACGCCGCTACACTTGGCGGCTAGCCACGGCCACGCAGAGACGGCAGC
AGCTCTCCTCGACGGAGGCGCCTGGGTAAGTCCATTCTGCGACGTAGAAG
GCTGCTCCCCGCTGGAGCTGGCCGTGCACCACGGACACCTACACGTAGTA
GAGGTGCTGGCAAAGTGTGGTGCAGATTTGGATGCGGCCACTTCCACCGG
AGGGATTTCCTTACAAGTAGCCGCGAGTCGCGGGATGGTGGGTCTGATTG
AATCTCTCGTGCGTGCTGGCGCCCGCCCGAACGTCCGTGATGCCGACGGA
TCGACCGCTCTTCACGTTGCCGCCGAGCGCGGCTTGTGTGACGTCCTCCG
GACGCTGGTAACACAAGGAGCCGACCCGGCCCAGTTCAACAACGCCGGTC
GAACCCCGCTCTCCCTGGCCGCCGGAGCGGGGCATCTTGAGGCAACTTTG
GTGTTGCTGTCCATTGCGCCCTCCACCGTCTCGCTTCGGTGTGGTGCCGA
GGCCTCACCCCTGGAGCTAGCGGCTGAGGCTGGGCACGTAGCGATTGTTA
CAGCACTACTTCGCCACGGCGCGGATGTTAACAGCTCCGACTGTCCCGGG
CAACCGGCGCTTCACCGTGCCGCCGACAGAGATCGCGTAGGATGCCTCAG
GGAGCTTATCCGATACGGTGCCAATCTGGACGCCAGGGACGCCGACGCCG
AGACCGCTCTCCACCACGCGGCAACATTCGATCGGGCGGGGGCGATTGAA
GAGCTCGCCCGGGCGGGAGCCGACATCGAAGCGATCGGGGAGGAGGGATA
TACCCCGCTCCACCTAGCCTGTCGATTCCTCAAGCAGAACGCTGTGGCCG
CCCTTCTGCGAAGCGGTGCAAGGGTGCTGACGCTTGATGAGTACGGGTAC
ACGCCTCTGCACTCTGCTGCCGCCAATGGCGCTAAGGCGGGCACCCACGC
CGTGGTGGACTTGCTGCTTACATGGGGTGCCGACCCTTACGCTGTCACAG
CGGGCGGATACACCGCCGCAGACATCATCGGGCACTACGAGGGCGGCGAG
GAGCTCTTGGTCGAGGACGCCGAGCGTATCAGACGCATGCTTTTGTCTCA
GGAAAGAGGCGTTCCAACGGGCGCTGATCCGTGATGTATCCGCCGCAGGT
TGAGTGGGGCAACCACTCGGAAAGTTTCTGTGTAATGTACACCCAAGGGT
AATGTAAAACTATAGAAAGTATACTACTGGTGAAAATCCACTTCTACATT
GCCGAGGAGGAGTTATGATCAAGGGGTAGGGTCAGGGTACTAGGAGGCTC
GAAAGAAACGTAGGAATTATCAGGATGGGCTCGCACGAGGGCAGCGTGCT
AGGGGGTTGATCCGGACGATCAGATTATGTCTACTGAAAACGGTGAGTTC
ATTTTAGTTTTATAGATACAGTAACTGTACTTTTTTTGTGCTCGTATTCT
TCCTCGTACTCCGCGCGTACGAGTAAACCGTTCCTCGCGCCTGGGGGGGT
TGCGCGAGGCTGCGCAAGTGATATGGTGAACCCCTAAATGGCGCCGGATA
GGTAGATTGACTGGAACTCACCTATCCGCTCGTAACTTGAGCAGTGCGAT
ATCTTGTTCTCCGCCCCACCCTACGCCCCGTATTAATGTGTACCGGTAGA
CGGATGGATTCTCTAGGTTTCTAGATACTCCATACCAAGGAACAACACGT
TTTGGATACAAGGGGCCGTCTGCACTTCGCATTAGAGGAGAATAAAACCG
TGCCTTTGTCAACCCCTGCGAGGGCGCCAACTACCCTTACGCCTCGCCAC
AGACCGCCCCTCTCGCTCCACCTTCCCCCCACCCTCCCAAGCGGGCGCCT
TTAACTTCTCCCCCTTCCCAATTTTCTCCAGAATACGATCCGCCTCCGTC
ACTTTAGCCCTCCGCCCCGCCTTGCCCCCGCGCTTGCCTCCCTTTCCCCC
GCCCCCGCCGACTCGCTCTTCCGCGTCCCGGGCCCAGGAAGTCGTATGCC
ACTTGAGCTCGTCTTCGCTCACGAAGGACTTTCCAGTGCTCCTATCCCAG
GCGGAGCCCCCGTTCCATTCGTTCTCCTCCTCATCGAGAGCATCTGCTGG
GGTTCTGGTCCCAGTCGACGGATTTCGGCTGGAAATTTTCTTTCCCTCTC
GGGGGGGGGTGATTGGAGAAAGCTTTTGGGGGCTTTTTAAGGTCTTCGTC
GTGAGGTTCTTCATTTTCTCGACCTCCCACTGTTGGGGCAATTTTTAACG
GGGGTCGAGGGGGGGGCGGTGGCGGAATGGCGGATTCGGAACATAGTGTT
AGTCTACAACAGTTGATTCTTTGGCACCTGTGACGTGTTCATGTTCTTGA
CCGCTACAGGTGTTACTCGGCTCGTGGCAATATCTGATACCGGGCTGCCC
GTGTCCCGCGTTGTGTAACGTAGCCCTAGCAGACAAAATAAAAAGTAAAA
ATTGTGGATATGGCGCGCCCACCGGTCCTTGAGTACTGAGTACAGTATCA
TTTGTTGATGTTTACTTCACACTCCCAAGCATATTTGGTGCGCGGTTAAA
GGGCCAAGGAGTCTTTCATAATGATAGCAATAGTGATAATGTAGTATTAT
AAGAATATTGTTTGTACTTGCGGAGCTACTGCACTTCGGTATACGGTACG
TAATTACCGTACTATTAATAATAGTTAATTGTAGTTAATAGTATCACGCT
TCGTTAAGTCGGTGCGTGTGTTTTGAGTGTATTGTTTTGTTTTGTTTTAC
AACATTTTCAGCGTATTCTTGGGGGTGACATGAAACAGCCACCCCAGGTA
ACGAGCCTGGTACAGCAGTGCCAGAGAGTGTGCGAGTGTCCAACATATTG
TAACATATTATTATACTGTAATAGTATCATGACAAAAGGGAGG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1036:176154..179496- >mRNA_F-serratus_M_contig1036.382.1 ID=mRNA_F-serratus_M_contig1036.382.1|Name=mRNA_F-serratus_M_contig1036.382.1|organism=Fucus serratus male|type=CDS|length=3054bp|location=Sequence derived from alignment at F-serratus_M_contig1036:176154..179496- (Fucus serratus male) ATGGCGAACAAAAACGATAGCGGAAATAATCACCGTCGTGCATTCCTACA CGGATTTGAGGTTCGACTTTTCGACCTGGTGTACGAACGCGCCACCTCGG AGCAGCGTGGCCCATGGCTGAGACTCTTGCTTGAGCTAGCTGCAGACACG GGCGACATGGCACTCCTATCAACGCTTCAGAGCGCCGGCGCCGAGGGGAG CATCGTGCACCTGGCCGTAAGAGGCGGCCTCGAGATGCTCGTACGTGACC ACTTCGAGCGCGGCGCCTCTGTTAACCAGCGTGACGTCAACGGCGACTGT CCTCTTCATCTAGCCGCAGCCAAGGGTAATGAGCGGATGGTTCGGGTGCT CCTTTCGTGCGGGGCAGACGAAAACGCACAGGACATGAAGCGCCGCACGC CGCTACACTTGGCGGCTAGCCACGGCCACGCAGAGACGGCAGCAGCTCTC CTCGACGGAGGCGCCTGGGTAAGTCCATTCTGCGACGTAGAAGGCTGCTC CCCGCTGGAGCTGGCCGTGCACCACGGACACCTACACGTAGTAGAGGTGC TGGCAAAGTGTGGTGCAGATTTGGATGCGGCCACTTCCACCGGAGGGATT TCCTTACAAGTAGCCGCGAGTCGCGGGATGGTGGGTCTGATTGAATCTCT CGTGCGTGCTGGCGCCCGCCCGAACGTCCGTGATGCCGACGGATCGACCG CTCTTCACGTTGCCGCCGAGCGCGGCTTGTGTGACGTCCTCCGGACGCTG GTAACACAAGGAGCCGACCCGGCCCAGTTCAACAACGCCGGTCGAACCCC GCTCTCCCTGGCCGCCGGAGCGGGGCATCTTGAGGCAACTTTGGTGTTGC TGTCCATTGCGCCCTCCACCGTCTCGCTTCGGTGTGGTGCCGAGGCCTCA CCCCTGGAGCTAGCGGCTGAGGCTGGGCACGTAGCGATTGTTACAGCACT ACTTCGCCACGGCGCGGATGTTAACAGCTCCGACTGTCCCGGGCAACCGG CGCTTCACCGTGCCGCCGACAGAGATCGCGTAGGATGCCTCAGGGAGCTT ATCCGATACGGTGCCAATCTGGACGCCAGGGACGCCGACGCCGAGACCGC TCTCCACCACGCGGCAACATTCGATCGGGCGGGGGCGATTGAAGAGCTCG CCCGGGCGGGAGCCGACATCGAAGCGATCGGGGAGGAGGGATATACCCCG CTCCACCTAGCCTGTCGATTCCTCAAGCAGAACGCTGTGGCCGCCCTTCT GCGAAGCGGTGCAAGGGTGCTGACGCTTGATGAGTACGGGTACACGCCTC TGCACTCTGCTGCCGCCAATGGCGCTAAGGCGGGCACCCACGCCGTGGTG GACTTGCTGCTTACATGGGGTGCCGACCCTTACGCTGTCACAGCGGGCGG ATACACCGCCGCAGACATCATCGGGCACTACGAGGGCGGCGAGGAGCTCT TGGTCGAGGACGCCGAGCGTATCAGACGCATGCTTTTGTCTCAGGAAAGA GGCGTTCCAACGGGCGCTGATCCGTGAATGGCGAACAAAAACGATAGCGG AAATAATCACCGTCGTGCATTCCTACACGGATTTGAGGTTCGACTTTTCG ACCTGGTGTACGAACGCGCCACCTCGGAGCAGCGTGGCCCATGGCTGAGA CTCTTGCTTGAGCTAGCTGCAGACACGGGCGACATGGCACTCCTATCAAC GCTTCAGAGCGCCGGCGCCGAGGGGAGCATCGTGCACCTGGCCGTAAGAG GCGGCCTCGAGATGCTCGTACGTGACCACTTCGAGCGCGGCGCCTCTGTT AACCAGCGTGACGTCAACGGCGACTGTCCTCTTCATCTAGCCGCAGCCAA GGGTAATGAGCGGATGGTTCGGGTGCTCCTTTCGTGCGGGGCAGACGAAA ACGCACAGGACATGAAGCGCCGCACGCCGCTACACTTGGCGGCTAGCCAC GGCCACGCAGAGACGGCAGCAGCTCTCCTCGACGGAGGCGCCTGGGTAAG TCCATTCTGCGACGTAGAAGGCTGCTCCCCGCTGGAGCTGGCCGTGCACC ACGGACACCTACACGTAGTAGAGGTGCTGGCAAAGTGTGGTGCAGATTTG GATGCGGCCACTTCCACCGGAGGGATTTCCTTACAAGTAGCCGCGAGTCG CGGGATGGTGGGTCTGATTGAATCTCTCGTGCGTGCTGGCGCCCGCCCGA ACGTCCGTGATGCCGACGGATCGACCGCTCTTCACGTTGCCGCCGAGCGC GGCTTGTGTGACGTCCTCCGGACGCTGGTAACACAAGGAGCCGACCCGGC CCAGTTCAACAACGCCGGTCGAACCCCGCTCTCCCTGGCCGCCGGAGCGG GGCATCTTGAGGCAACTTTGGTGTTGCTGTCCATTGCGCCCTCCACCGTC TCGCTTCGGTGTGGTGCCGAGGCCTCACCCCTGGAGCTAGCGGCTGAGGC TGGGCACGTAGCGATTGTTACAGCACTACTTCGCCACGGCGCGGATGTTA ACAGCTCCGACTGTCCCGGGCAACCGGCGCTTCACCGTGCCGCCGACAGA GATCGCGTAGGATGCCTCAGGGAGCTTATCCGATACGGTGCCAATCTGGA CGCCAGGGACGCCGACGCCGAGACCGCTCTCCACCACGCGGCAACATTCG ATCGGGCGGGGGCGATTGAAGAGCTCGCCCGGGCGGGAGCCGACATCGAA GCGATCGGGGAGGAGGGATATACCCCGCTCCACCTAGCCTGTCGATTCCT CAAGCAGAACGCTGTGGCCGCCCTTCTGCGAAGCGGTGCAAGGGTGCTGA CGCTTGATGAGTACGGGTACACGCCTCTGCACTCTGCTGCCGCCAATGGC GCTAAGGCGGGCACCCACGCCGTGGTGGACTTGCTGCTTACATGGGGTGC CGACCCTTACGCTGTCACAGCGGGCGGATACACCGCCGCAGACATCATCG GGCACTACGAGGGCGGCGAGGAGCTCTTGGTCGAGGACGCCGAGCGTATC AGACGCATGCTTTTGTCTCAGGAAAGAGGCGTTCCAACGGGCGCTGATCC GTGA back to top
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