mRNA_F-serratus_M_contig1494.3399.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: D7FUM9_ECTSI (Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM9_ECTSI) HSP 1 Score: 233 bits (593), Expect = 4.210e-76 Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 4 SQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
S+DYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGV+LLALYKDKKEKPRS
Sbjct: 87 SKDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVALLALYKDKKEKPRS 206
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A835Z8V8_9STRA (Putative ribosomal protein S23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V8_9STRA) HSP 1 Score: 226 bits (576), Expect = 2.170e-74 Identity = 113/120 (94.17%), Postives = 119/120 (99.17%), Query Frame = 1
Query: 4 SQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
S+DYNK+HSVTAMKANPLGG+SMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+TDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVS+LALYK KKEKPRS
Sbjct: 26 SKDYNKAHSVTAMKANPLGGASMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSILALYKGKKEKPRS 145
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A4W5LQ08_9TELE (40S ribosomal protein S23 n=31 Tax=Eukaryota TaxID=2759 RepID=A0A4W5LQ08_9TELE) HSP 1 Score: 223 bits (569), Expect = 5.420e-73 Identity = 111/119 (93.28%), Postives = 116/119 (97.48%), Query Frame = 1
Query: 7 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
+ YNKSHS+TAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKC RVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS
Sbjct: 50 KSYNKSHSITAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 168
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: M4BPE8_HYAAE (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=M4BPE8_HYAAE) HSP 1 Score: 217 bits (552), Expect = 9.870e-71 Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 7 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
+ YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRK RVQLIKN KK+AAFVPRDGCLNF DENDEVLISGFGRRGHAVGDIPGVRFKVVKV+GVSLLALYK+KKEKPRS
Sbjct: 27 KSYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKSCRVQLIKNSKKIAAFVPRDGCLNFVDENDEVLISGFGRRGHAVGDIPGVRFKVVKVSGVSLLALYKEKKEKPRS 145
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A7R9WFA5_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7R9WFA5_9STRA) HSP 1 Score: 215 bits (548), Expect = 3.760e-70 Identity = 107/119 (89.92%), Postives = 114/119 (95.80%), Query Frame = 1
Query: 7 QDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
Q Y K+HS+TAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVLISGFGR GHAVGDIPGVRFKV KVAGVSLLALYK+KKEKPRS
Sbjct: 25 QKYCKAHSITAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLISGFGRSGHAVGDIPGVRFKVAKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: B8C1Z7_THAPS (RS23, ribosomal protein 23 40S small ribosomal subunit n=15 Tax=Bacillariophyta TaxID=2836 RepID=B8C1Z7_THAPS) HSP 1 Score: 213 bits (543), Expect = 2.170e-69 Identity = 105/117 (89.74%), Postives = 113/117 (96.58%), Query Frame = 1
Query: 13 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
Y K+HSVTAMKANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVL++GFGR GHAVGDIPGVRFK VKVAGVSLLALYK+KKEKPRS
Sbjct: 27 YTKAHSVTAMKANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLVAGFGRSGHAVGDIPGVRFKCVKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: W7TKK2_9STRA (40s ribosomal protein s23 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKK2_9STRA) HSP 1 Score: 212 bits (540), Expect = 6.650e-69 Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 1
Query: 4 SQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
S+ +NK+HSVT MKANPLGG++MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLNF DENDEVLI+GFGR GHAVGDIPGVRFKV+KV+GV LLAL+KDKKEKPRS
Sbjct: 26 SKRWNKAHSVTHMKANPLGGAAMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNFVDENDEVLIAGFGRSGHAVGDIPGVRFKVIKVSGVGLLALFKDKKEKPRS 145
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A6U0RBQ4_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A6U0RBQ4_9STRA) HSP 1 Score: 211 bits (537), Expect = 1.790e-68 Identity = 104/117 (88.89%), Postives = 114/117 (97.44%), Query Frame = 1
Query: 13 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
Y K +S+TAM+ANP+GGS+MAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKK+AAFVPRDGCLN+ DENDEVLI+GFGR+GHAVGDIPGVRFKVVKVAGVSLLALYK+KKEKPRS
Sbjct: 27 YCKKNSITAMRANPMGGSTMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKIAAFVPRDGCLNYVDENDEVLIAGFGRKGHAVGDIPGVRFKVVKVAGVSLLALYKEKKEKPRS 143
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A5A8EIQ0_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EIQ0_CAFRO) HSP 1 Score: 211 bits (536), Expect = 2.710e-68 Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = 1
Query: 13 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
YNKSHS+TAMKANP GG+SMAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+AAFVPRDG LNF DENDEVLISGFGR GHAVGDIPGVRFKVVKVAGVSLLAL+K KKEKPRS
Sbjct: 29 YNKSHSITAMKANPFGGASMAKGIVLEKMGVEAKQPNSAIRKCARVQLIKNGKKIAAFVPRDGSLNFVDENDEVLISGFGRAGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRS 145
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Match: A0A8E8PJI4_9STRA (40S ribosomal protein S23 n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJI4_9STRA) HSP 1 Score: 210 bits (535), Expect = 3.850e-68 Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1
Query: 13 YNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVQLIKNGKKLAAFVPRDGCLNFTDENDEVLISGFGRRGHAVGDIPGVRFKVVKVAGVSLLALYKDKKEKPRS 363
YNKSHSV AMKANPLGGSSMAKGIV+EKIGIEAKQPNSAIRKCVRVQLIKN KK+ AFVP DGCLNF DENDEVL+SGFGR GHAVGDIPGVRFKVVKVAGVSLLAL+K KKEKPR+
Sbjct: 29 YNKSHSVAAMKANPLGGSSMAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNSKKITAFVPNDGCLNFVDENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALFKGKKEKPRA 145 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1494.3399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1494.3399.1 >prot_F-serratus_M_contig1494.3399.1 ID=prot_F-serratus_M_contig1494.3399.1|Name=mRNA_F-serratus_M_contig1494.3399.1|organism=Fucus serratus male|type=polypeptide|length=122bp SSQDYNKSHSVTAMKANPLGGSSMAKGIVLEKIGIEAKQPNSAIRKCVRVback to top mRNA from alignment at F-serratus_M_contig1494:22856..23896- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1494.3399.1 ID=mRNA_F-serratus_M_contig1494.3399.1|Name=mRNA_F-serratus_M_contig1494.3399.1|organism=Fucus serratus male|type=mRNA|length=1041bp|location=Sequence derived from alignment at F-serratus_M_contig1494:22856..23896- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1494:22856..23896- >mRNA_F-serratus_M_contig1494.3399.1 ID=mRNA_F-serratus_M_contig1494.3399.1|Name=mRNA_F-serratus_M_contig1494.3399.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1494:22856..23896- (Fucus serratus male)back to top |