mRNA_F-serratus_M_contig149.3351.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig149.3351.1
Unique NamemRNA_F-serratus_M_contig149.3351.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig149.3351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig149contigF-serratus_M_contig149:217610..218305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size696
Cds size696
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.1941535-CDS-F-serratus_M_contig149:217609..2183051622929463.1941535-CDS-F-serratus_M_contig149:217609..218305Fucus serratus maleCDSF-serratus_M_contig149 217610..218305 +
1690962864.3692837-CDS-F-serratus_M_contig149:217609..2183051690962864.3692837-CDS-F-serratus_M_contig149:217609..218305Fucus serratus maleCDSF-serratus_M_contig149 217610..218305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig149.3351.1prot_F-serratus_M_contig149.3351.1Fucus serratus malepolypeptideF-serratus_M_contig149 217610..218305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig149.3351.1

>prot_F-serratus_M_contig149.3351.1 ID=prot_F-serratus_M_contig149.3351.1|Name=mRNA_F-serratus_M_contig149.3351.1|organism=Fucus serratus male|type=polypeptide|length=232bp
MRQELYSSAASQQPKAVARFRHSEVEATKPWTAAHITPRKRRLTSRAGSV
EAKTPANGRLSEWPPRKKGVVLTTHITPLEKMVDVCSRKCRTEGCGKKPS
FGVAGTKTREYCAKRASDGVVDVKRITCIPEARGKRPSFGVAGIKKEECC
TQNVPNEMVDAKNRKCRTEDCGMKSFFGVAGAKTAEYCSQHTPDGMIDVD
ARKCSSEVCGKIPSFGVAGTKKAEYCAQHAPN
back to top

mRNA from alignment at F-serratus_M_contig149:217610..218305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig149.3351.1 ID=mRNA_F-serratus_M_contig149.3351.1|Name=mRNA_F-serratus_M_contig149.3351.1|organism=Fucus serratus male|type=mRNA|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig149:217610..218305+ (Fucus serratus male)
ATGAGGCAAGAGCTATACTCGTCGGCAGCAAGTCAACAGCCGAAGGCTGT
GGCACGATTCCGACATTCGGAGGTAGAGGCAACAAAACCGTGGACTGCGG
CGCATATTACGCCCCGGAAGAGACGGTTGACGTCAAGAGCAGGGAGTGTA
GAAGCGAAGACTCCGGCAAATGGTCGTCTTTCGGAGTGGCCACCGCGCAA
GAAAGGCGTAGTACTTACTACACACATCACGCCCCTGGAGAAGATGGTGG
ACGTCTGCAGCAGAAAGTGCAGAACCGAAGGTTGCGGAAAAAAGCCTTCG
TTTGGAGTGGCAGGTACGAAAACGAGGGAGTACTGCGCGAAGCGCGCATC
GGATGGGGTGGTCGACGTCAAGAGAATAACGTGTATACCAGAAGCTCGCG
GTAAGAGGCCATCGTTCGGAGTGGCGGGGATTAAAAAGGAGGAGTGCTGT
ACACAGAACGTGCCGAACGAGATGGTTGATGCTAAGAACAGGAAGTGCAG
AACCGAAGATTGCGGCATGAAGTCGTTTTTCGGAGTGGCAGGTGCGAAAA
CGGCGGAGTATTGTTCGCAGCACACCCCGGACGGGATGATCGATGTCGAT
GCCAGAAAGTGCAGCTCCGAAGTCTGTGGCAAGATTCCGTCGTTCGGAGT
GGCAGGTACGAAAAAGGCGGAGTACTGTGCTCAGCACGCCCCGAAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig149:217610..218305+

>mRNA_F-serratus_M_contig149.3351.1 ID=mRNA_F-serratus_M_contig149.3351.1|Name=mRNA_F-serratus_M_contig149.3351.1|organism=Fucus serratus male|type=CDS|length=1392bp|location=Sequence derived from alignment at F-serratus_M_contig149:217610..218305+ (Fucus serratus male)
ATGAGGCAAGAGCTATACTCGTCGGCAGCAAGTCAACAGCCGAAGGCTGT
GGCACGATTCCGACATTCGGAGGTAGAGGCAACAAAACCGTGGACTGCGG
CGCATATTACGCCCCGGAAGAGACGGTTGACGTCAAGAGCAGGGAGTGTA
GAAGCGAAGACTCCGGCAAATGGTCGTCTTTCGGAGTGGCCACCGCGCAA
GAAAGGCGTAGTACTTACTACACACATCACGCCCCTGGAGAAGATGGTGG
ACGTCTGCAGCAGAAAGTGCAGAACCGAAGGTTGCGGAAAAAAGCCTTCG
TTTGGAGTGGCAGGTACGAAAACGAGGGAGTACTGCGCGAAGCGCGCATC
GGATGGGGTGGTCGACGTCAAGAGAATAACGTGTATACCAGAAGCTCGCG
GTAAGAGGCCATCGTTCGGAGTGGCGGGGATTAAAAAGGAGGAGTGCTGT
ACACAGAACGTGCCGAACGAGATGGTTGATGCTAAGAACAGGAAGTGCAG
AACCGAAGATTGCGGCATGAAGTCGTTTTTCGGAGTGGCAGGTGCGAAAA
CGGCGGAGTATTGTTCGCAGCACACCCCGGACGGGATGATCGATGTCGAT
GCCAGAAAGTGCAGCTCCGAAGTCTGTGGCAAGATTCCGTCGTTCGGAGT
GGCAGGTACGAAAAAGGCGGAGTACTGTGCTCAGCACGCCCCGAATATGA
GGCAAGAGCTATACTCGTCGGCAGCAAGTCAACAGCCGAAGGCTGTGGCA
CGATTCCGACATTCGGAGGTAGAGGCAACAAAACCGTGGACTGCGGCGCA
TATTACGCCCCGGAAGAGACGGTTGACGTCAAGAGCAGGGAGTGTAGAAG
CGAAGACTCCGGCAAATGGTCGTCTTTCGGAGTGGCCACCGCGCAAGAAA
GGCGTAGTACTTACTACACACATCACGCCCCTGGAGAAGATGGTGGACGT
CTGCAGCAGAAAGTGCAGAACCGAAGGTTGCGGAAAAAAGCCTTCGTTTG
GAGTGGCAGGTACGAAAACGAGGGAGTACTGCGCGAAGCGCGCATCGGAT
GGGGTGGTCGACGTCAAGAGAATAACGTGTATACCAGAAGCTCGCGGTAA
GAGGCCATCGTTCGGAGTGGCGGGGATTAAAAAGGAGGAGTGCTGTACAC
AGAACGTGCCGAACGAGATGGTTGATGCTAAGAACAGGAAGTGCAGAACC
GAAGATTGCGGCATGAAGTCGTTTTTCGGAGTGGCAGGTGCGAAAACGGC
GGAGTATTGTTCGCAGCACACCCCGGACGGGATGATCGATGTCGATGCCA
GAAAGTGCAGCTCCGAAGTCTGTGGCAAGATTCCGTCGTTCGGAGTGGCA
GGTACGAAAAAGGCGGAGTACTGTGCTCAGCACGCCCCGAAT
back to top