mRNA_F-serratus_M_contig1489.3350.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1489.3350.1
Unique NamemRNA_F-serratus_M_contig1489.3350.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1489.3350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1489contigF-serratus_M_contig1489:237812..238549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size711
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929462.7036006-CDS-F-serratus_M_contig1489:237811..2385221622929462.7036006-CDS-F-serratus_M_contig1489:237811..238522Fucus serratus maleCDSF-serratus_M_contig1489 237812..238522 +
1690962864.0799809-CDS-F-serratus_M_contig1489:237811..2385221690962864.0799809-CDS-F-serratus_M_contig1489:237811..238522Fucus serratus maleCDSF-serratus_M_contig1489 237812..238522 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929462.7204494-UTR-F-serratus_M_contig1489:238522..2385491622929462.7204494-UTR-F-serratus_M_contig1489:238522..238549Fucus serratus maleUTRF-serratus_M_contig1489 238523..238549 +
1690962864.0888944-UTR-F-serratus_M_contig1489:238522..2385491690962864.0888944-UTR-F-serratus_M_contig1489:238522..238549Fucus serratus maleUTRF-serratus_M_contig1489 238523..238549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1489.3350.1prot_F-serratus_M_contig1489.3350.1Fucus serratus malepolypeptideF-serratus_M_contig1489 237812..238522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1489.3350.1

>prot_F-serratus_M_contig1489.3350.1 ID=prot_F-serratus_M_contig1489.3350.1|Name=mRNA_F-serratus_M_contig1489.3350.1|organism=Fucus serratus male|type=polypeptide|length=237bp
MAPTDERPLYDDSSCNSSQPPNPSGPHPDFVAHVQAAFRTLDTRRISRIQ
PLQFPPSADRTAATQLLTRSIRDALSGIFDVADPTGTVTMDSPIWIPGWH
APLLKLVKAAIIANRDDTHDLHRLVDDLFLQLQERLSSSSSSSGPEAFKT
LLTDFADYFDRAPRGAALETLQRFGVRTGTPFSSYLRGPSRCRSQYSRER
RPVGAFRDDGHRAYSNTYGPTVPHVDAHFVPRGSSD*
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mRNA from alignment at F-serratus_M_contig1489:237812..238549+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1489.3350.1 ID=mRNA_F-serratus_M_contig1489.3350.1|Name=mRNA_F-serratus_M_contig1489.3350.1|organism=Fucus serratus male|type=mRNA|length=738bp|location=Sequence derived from alignment at F-serratus_M_contig1489:237812..238549+ (Fucus serratus male)
ATGGCCCCGACAGACGAGCGCCCCTTGTATGACGACAGTTCATGCAACAG
CTCACAACCACCCAACCCTTCGGGCCCCCATCCGGACTTCGTTGCCCACG
TACAGGCTGCCTTTCGCACCCTGGACACGCGCAGAATTTCCCGCATTCAA
CCATTGCAGTTCCCCCCTTCCGCGGACAGAACTGCCGCTACTCAACTCTT
GACTCGCTCAATCCGCGACGCGCTGTCAGGGATCTTTGACGTAGCTGATC
CTACCGGGACTGTGACCATGGACTCCCCCATTTGGATTCCCGGGTGGCAT
GCACCGCTTCTTAAGTTGGTCAAAGCGGCTATCATTGCTAACCGCGACGA
CACTCATGACCTACACCGCCTCGTCGACGATCTCTTCTTACAATTACAGG
AAAGGCTGAGCTCCAGCTCCAGCTCCAGCGGTCCAGAAGCGTTTAAGACT
CTGCTTACGGACTTCGCGGATTACTTTGATCGAGCACCACGTGGAGCCGC
GCTCGAGACCCTTCAGCGATTTGGAGTCCGTACGGGAACTCCATTCTCTA
GTTACCTACGGGGCCCTTCGCGTTGTCGTAGCCAGTACAGTAGAGAAAGG
CGGCCCGTTGGCGCCTTCCGCGACGATGGCCATCGAGCTTATTCGAATAC
GTACGGCCCAACAGTACCCCACGTTGATGCCCACTTTGTTCCCAGGGGAT
CGAGCGACTAGAGAAAGCCCGTATGCTTCACTGCCCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1489:237812..238549+

>mRNA_F-serratus_M_contig1489.3350.1 ID=mRNA_F-serratus_M_contig1489.3350.1|Name=mRNA_F-serratus_M_contig1489.3350.1|organism=Fucus serratus male|type=CDS|length=1422bp|location=Sequence derived from alignment at F-serratus_M_contig1489:237812..238549+ (Fucus serratus male)
ATGGCCCCGACAGACGAGCGCCCCTTGTATGACGACAGTTCATGCAACAG
CTCACAACCACCCAACCCTTCGGGCCCCCATCCGGACTTCGTTGCCCACG
TACAGGCTGCCTTTCGCACCCTGGACACGCGCAGAATTTCCCGCATTCAA
CCATTGCAGTTCCCCCCTTCCGCGGACAGAACTGCCGCTACTCAACTCTT
GACTCGCTCAATCCGCGACGCGCTGTCAGGGATCTTTGACGTAGCTGATC
CTACCGGGACTGTGACCATGGACTCCCCCATTTGGATTCCCGGGTGGCAT
GCACCGCTTCTTAAGTTGGTCAAAGCGGCTATCATTGCTAACCGCGACGA
CACTCATGACCTACACCGCCTCGTCGACGATCTCTTCTTACAATTACAGG
AAAGGCTGAGCTCCAGCTCCAGCTCCAGCGGTCCAGAAGCGTTTAAGACT
CTGCTTACGGACTTCGCGGATTACTTTGATCGAGCACCACGTGGAGCCGC
GCTCGAGACCCTTCAGCGATTTGGAGTCCGTACGGGAACTCCATTCTCTA
GTTACCTACGGGGCCCTTCGCGTTGTCGTAGCCAGTACAGTAGAGAAAGG
CGGCCCGTTGGCGCCTTCCGCGACGATGGCCATCGAGCTTATTCGAATAC
GTACGGCCCAACAGTACCCCACGTTGATGCCCACTTTGTTCCCAGGGGAT
CGAGCGACTAGATGGCCCCGACAGACGAGCGCCCCTTGTATGACGACAGT
TCATGCAACAGCTCACAACCACCCAACCCTTCGGGCCCCCATCCGGACTT
CGTTGCCCACGTACAGGCTGCCTTTCGCACCCTGGACACGCGCAGAATTT
CCCGCATTCAACCATTGCAGTTCCCCCCTTCCGCGGACAGAACTGCCGCT
ACTCAACTCTTGACTCGCTCAATCCGCGACGCGCTGTCAGGGATCTTTGA
CGTAGCTGATCCTACCGGGACTGTGACCATGGACTCCCCCATTTGGATTC
CCGGGTGGCATGCACCGCTTCTTAAGTTGGTCAAAGCGGCTATCATTGCT
AACCGCGACGACACTCATGACCTACACCGCCTCGTCGACGATCTCTTCTT
ACAATTACAGGAAAGGCTGAGCTCCAGCTCCAGCTCCAGCGGTCCAGAAG
CGTTTAAGACTCTGCTTACGGACTTCGCGGATTACTTTGATCGAGCACCA
CGTGGAGCCGCGCTCGAGACCCTTCAGCGATTTGGAGTCCGTACGGGAAC
TCCATTCTCTAGTTACCTACGGGGCCCTTCGCGTTGTCGTAGCCAGTACA
GTAGAGAAAGGCGGCCCGTTGGCGCCTTCCGCGACGATGGCCATCGAGCT
TATTCGAATACGTACGGCCCAACAGTACCCCACGTTGATGCCCACTTTGT
TCCCAGGGGATCGAGCGACTAG
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