mRNA_F-serratus_M_contig1488.3341.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1488.3341.1 vs. uniprot
Match: D7FHT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT4_ECTSI) HSP 1 Score: 336 bits (861), Expect = 5.830e-98 Identity = 219/481 (45.53%), Postives = 287/481 (59.67%), Query Frame = 2
Query: 1232 SHRVTQSLRDPATNTLLGMRANEVKRARGARIRDLVACFERRRMEEEKAAREMYDIKERELGARRERLRLARSRKGQARMWLVVIKTLAAFSWSKKRLEDLAERKTRQDAARIIKRCLAVVAGQRFKLRLNVATLVIHKQFTEKIRRWKAKRAAEAAAVLALFLSDVKRSGVQPRVKLLAYRVAHAHIQLAHIQRWWRTVRRKNEAYRQVMCRLWEQEVNRRVDDKVVEIIRARQD--------TQSSHSDAE-----------VVQRW----FSRKASSSS-----------------MGAHRAKVVRHVKEEK---EKAK-RTRWMLDPLINPPPDVKARMCAEYLKQMKMRHLGAVKTYERE------------------KLRQISASFRRGNKFI----AGLSVRPRWRTGATLREVRALVDAGVEFVAGTFWLWEPQTPIRLEDGTLVAESMPTPEGLAAGVARRFKYDHDSATVL 2476
++R TQ+L DP T +L RAN KRAR RIR LV+ +RRR ++ AARE +KE++ ARRER + AR R Q + WL +K AA +W L+ + E K R +AA++I R + VA RFKLR+ VAT VI QF +KIRRWK KR EA AVL FL+DVK S V+ RVKLLA+RVAHAH+QLA +QRWWR +++ A R+VMCRLWE+EV+RRVD KV EI RAR + T S++ + RW +AS+S+ GA + K R KEE+ EKA R +LDPLINPP D++ RMC EY+KQM +RH GAV +E + L +S + + G + + AG+ VRPRWRTG EV ALVDAGV++++G WLWEP+TP RLEDG+L+A++MPTPE LAA VA +F+Y +L
Sbjct: 201 ANRATQTLLDPETKAVLTRRANACKRAREERIRSLVSSCQRRRHDQGIAARENQAVKEQKSEARRERTKQARGRAVQTKGWLTALKMHAAVAWVVNGLDGIEEEKRRAEAAKVITRHIMAVARHRFKLRVEVATKVIDNQFAKKIRRWKTKRDTEATAVLKRFLTDVKSSDVRTRVKLLAWRVAHAHVQLARLQRWWRRRQQEMAACRRVMCRLWEKEVSRRVDAKVDEIWRARNEASLFAHESTNSNNHQGDGAGFGGALLGGSALRWGVVRHDPRASASAPGXXXXXXXIDLLREGGFGAAKGKAFRQFKEEQARGEKATIRAHLLLDPLINPPGDLRVRMCGEYVKQMALRHAGAVAEFETKAKHIAGLQLKTTKFGEKGSLLAVSLAVQAGRRVLGLEMAGMPVRPRWRTGPVPGEVAALVDAGVDYISGVQWLWEPRTPSRLEDGSLLADAMPTPEELAARVASKFRYGGTKLAML 681
BLAST of mRNA_F-serratus_M_contig1488.3341.1 vs. uniprot
Match: A0A6H5K0X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X7_9PHAE) HSP 1 Score: 298 bits (762), Expect = 2.950e-84 Identity = 211/491 (42.97%), Postives = 282/491 (57.43%), Query Frame = 2
Query: 1232 SHRVTQSLRDPATNTLLGMRANEVKRARGARIRDLVACFERRRMEEEKAAREMYDIKERELGARRERLRLARSRKGQARMWLVVIKTLAAFSWSKKRLEDLAERKTRQDAARIIKRCLAVVAGQRFKLRLNVATLVIHKQFTEKIRRWKAKRAAEAAAVLALFLSDVKRSGVQPRVKLLAYRVAHAHIQLAHIQRWWRTVRRKNEAYRQVMCRLWEQEVNRRVDDK-----------VVEIIRARQDT-----QSSHSD--------------AEVVQRW----FSRKASSSS-----------------MGAHRAKVVRHVKEEK---EKAK-RTRWMLDPLINPPPDVKARMCAEYLKQMKMRHLGAVKTYERE-------KLRQISASFRRGNKFIAGLSVRPRWRTGATLREVRALVDAGVEFVAGTFWLWEPQTPIRLEDGTLVAESMPTPEGLAAGVARRFKYDHDSATVLEIAENCDQEGRTTL 2518
++R TQ+L DP T +L RAN KRAR RIR LV+ +RRR +++ AARE +KE++ ARRER + AR R Q + WL +K AA +W L+ + + K R +AA++I R + VA RFKLR+ VAT VI QF +KIR + A + + AL + S V+ RVKLLA+RVAHAH+QLA +QRWWR +++ A R+VMCRLWE+EV+RRVD K V EI RAR + +S++S+ E RW +AS+S+ GA + K +R KEE+ EKA R +LDPLINPP D++ RMCAEY+KQM +RH GAV +E + +LR N+ I + VRPRWRTG EV ALVDAGV++++G WLWEP+TP RLEDG+L+A+SMPTPE LAA VA +F+Y +L E R L
Sbjct: 176 ANRATQTLLDPDTKAVLTRRANAWKRAREERIRSLVSSCQRRRRDQDIAARENQTVKEQKSEARRERTKQARGRAAQTKGWLTALKMRAAVAWVVNGLDGIEDEKRRAEAAKVITRHVMAVARHRFKLRVEVATKVIDNQFAKKIRS-RRSMAKTKSPLPALPRTLTISSDVRTRVKLLAWRVAHAHVQLARLQRWWRRRQQEMAACRRVMCRLWEKEVSRRVDVKCHCMPIRFNLKVDEIWRARNEASLFAHESTNSNNHQGDGAGFGGALLGESALRWGVVRHDPRASASAPGXXXXXXXIDLLREGGFGAVKGKALRQFKEEQARGEKATIRAHLLLDPLINPPGDLRVRMCAEYVKQMALRHAGAVAEFETKAKYIADLQLRTTKVRVLNTNQ-IQEMPVRPRWRTGPIPGEVAALVDAGVDYISGVQWLWEPRTPSRLEDGSLLADSMPTPEELAARVASKFRYGGTKLAMLFDDEPASAVERRDL 664 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1488.3341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1488.3341.1 >prot_F-serratus_M_contig1488.3341.1 ID=prot_F-serratus_M_contig1488.3341.1|Name=mRNA_F-serratus_M_contig1488.3341.1|organism=Fucus serratus male|type=polypeptide|length=468bp MATTPNSASRRSWIPGGILVKQVPHFGMPPRLSHRVTQSLRDPATNTLLGback to top mRNA from alignment at F-serratus_M_contig1488:76812..97595- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1488.3341.1 ID=mRNA_F-serratus_M_contig1488.3341.1|Name=mRNA_F-serratus_M_contig1488.3341.1|organism=Fucus serratus male|type=mRNA|length=20784bp|location=Sequence derived from alignment at F-serratus_M_contig1488:76812..97595- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1488:76812..97595- >mRNA_F-serratus_M_contig1488.3341.1 ID=mRNA_F-serratus_M_contig1488.3341.1|Name=mRNA_F-serratus_M_contig1488.3341.1|organism=Fucus serratus male|type=CDS|length=2808bp|location=Sequence derived from alignment at F-serratus_M_contig1488:76812..97595- (Fucus serratus male)back to top |