mRNA_F-serratus_M_contig148.3318.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig148.3318.1
Unique NamemRNA_F-serratus_M_contig148.3318.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig148.3318.1 vs. uniprot
Match: D7FRY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY6_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 9.210e-67
Identity = 131/204 (64.22%), Postives = 150/204 (73.53%), Query Frame = 2 
Query:   47 MAPACWCLLLTFALLLL--SKSIDAFFRPRIVL-NGRHSNTPIMNKFTCVMSVPVERRPFATQLSQGILG--VLGLGVASERVQAYEKEYLSDPTPEFKAMEAKQSEFANAQRAYKNEFVKQLDAFLAVKTDDDAVDTLNTMSRTVVQRGGLPESVRINDLLKTCRKKKAEMKGSGKWSTPVQIAYETLVQVTNRSVIPLQSGS 643
            MAP  +  L+  AL LL   K  DAF  PR  L   R     IM     VMS    RR F +    G +G  VLGLG+A+ER  AYEKEYL +PT EFKAMEA+Q++F+ AQRAYK EFVK+LDAFLAV+TD++AV TLN MS TV+QRGGLPESVRINDLLKTCR+KKA MK SGKWSTPVQIAYETLVQ TNR+V+PLQSGS
Sbjct:    1 MAPVSYITLVVSALTLLLPRKGADAFVHPRPALPRSRQQQQSIM-----VMSA--TRRAFLSDQLVGAIGAGVLGLGLATERATAYEKEYLKEPTAEFKAMEARQADFSAAQRAYKQEFVKKLDAFLAVETDEEAVSTLNAMSNTVIQRGGLPESVRINDLLKTCRRKKAAMKDSGKWSTPVQIAYETLVQTTNRTVVPLQSGS 197
[Close]
BLAST of mRNA_F-serratus_M_contig148.3318.1 vs. uniprot
Match: A0A7R9U2W1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2W1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.240e-9
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 2 
Query:  284 AYEKEYLSDPTPEFKAMEAKQSEFANAQRAYKNEFVKQLDAFLAVKTDDDAVDTLNTMSRTVVQRGGLPESVRINDLLKTCRKKKAEMKGSGKWSTPVQIAYETLVQVTNRSVIPL 631
            AYEK  +++PTP ++  EA+ + F   QR     F    DAF +   +    D L +M++ VVQ+GGLP  +    ++   R KKA+M  +G W T  ++AY  L     R  +PL
Sbjct:   51 AYEK--VAEPTPAWEEAEAQAAAFRKKQRELAKTFNAFFDAFTSATNEKIMQDNLQSMTKFVVQQGGLPSGITAKQVISGVRSKKADMSRAGGWETETEMAYLDLTLQMRRLSLPL 164
[Close]
BLAST of mRNA_F-serratus_M_contig148.3318.1 vs. uniprot
Match: A0A7S1CXS8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXS8_CYCTE)

HSP 1 Score: 66.2 bits (160), Expect = 7.070e-9
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 2 
Query:  299 YLSDPTPEFKAMEAKQSEFANAQRAYKNEFVKQLDAFLAV-KTDDDAVDTLNTMSRTVVQRGGLPESVRINDLLKTCRKKKAEMKGSGKWSTPVQIAYETLVQ 604
            +L++PT EFKA EAK  EF  AQ A K +FV  +D      KT+   V  LN +   V+   GLP  ++  +L KT R+KKA+    G W T V+ AY+ L++
Sbjct:   73 WLTEPTEEFKANEAKSMEFKRAQLAQKAKFVTVIDRLSTESKTEAALVGDLNELQDLVIATRGLPLGIKKEELYKTIRRKKAQ----GFWPTAVEYAYQALIR 171
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig148.3318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRY6_ECTSI9.210e-6764.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9U2W1_9STRA1.240e-934.48Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1CXS8_CYCTE7.070e-940.78Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig148contigF-serratus_M_contig148:639891..652566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue3.2e-56
Seed eggNOG ortholog2880.D7FRY6
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E8FF@1,2SEXQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_003630.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1783
Cds size600
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929455.4834814-UTR-F-serratus_M_contig148:639890..6399361622929455.4834814-UTR-F-serratus_M_contig148:639890..639936Fucus serratus maleUTRF-serratus_M_contig148 639891..639936 +
1690962861.0487804-UTR-F-serratus_M_contig148:639890..6399361690962861.0487804-UTR-F-serratus_M_contig148:639890..639936Fucus serratus maleUTRF-serratus_M_contig148 639891..639936 +
1622929455.6168354-UTR-F-serratus_M_contig148:651429..6525661622929455.6168354-UTR-F-serratus_M_contig148:651429..652566Fucus serratus maleUTRF-serratus_M_contig148 651430..652566 +
1690962861.1003203-UTR-F-serratus_M_contig148:651429..6525661690962861.1003203-UTR-F-serratus_M_contig148:651429..652566Fucus serratus maleUTRF-serratus_M_contig148 651430..652566 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929455.4982927-CDS-F-serratus_M_contig148:639936..6401821622929455.4982927-CDS-F-serratus_M_contig148:639936..640182Fucus serratus maleCDSF-serratus_M_contig148 639937..640182 +
1690962861.0600145-CDS-F-serratus_M_contig148:639936..6401821690962861.0600145-CDS-F-serratus_M_contig148:639936..640182Fucus serratus maleCDSF-serratus_M_contig148 639937..640182 +
1622929455.5112214-CDS-F-serratus_M_contig148:649692..6498031622929455.5112214-CDS-F-serratus_M_contig148:649692..649803Fucus serratus maleCDSF-serratus_M_contig148 649693..649803 +
1690962861.0678875-CDS-F-serratus_M_contig148:649692..6498031690962861.0678875-CDS-F-serratus_M_contig148:649692..649803Fucus serratus maleCDSF-serratus_M_contig148 649693..649803 +
1622929455.544052-CDS-F-serratus_M_contig148:650125..6501821622929455.544052-CDS-F-serratus_M_contig148:650125..650182Fucus serratus maleCDSF-serratus_M_contig148 650126..650182 +
1690962861.077726-CDS-F-serratus_M_contig148:650125..6501821690962861.077726-CDS-F-serratus_M_contig148:650125..650182Fucus serratus maleCDSF-serratus_M_contig148 650126..650182 +
1622929455.5598736-CDS-F-serratus_M_contig148:650969..6511011622929455.5598736-CDS-F-serratus_M_contig148:650969..651101Fucus serratus maleCDSF-serratus_M_contig148 650970..651101 +
1690962861.085258-CDS-F-serratus_M_contig148:650969..6511011690962861.085258-CDS-F-serratus_M_contig148:650969..651101Fucus serratus maleCDSF-serratus_M_contig148 650970..651101 +
1622929455.5847821-CDS-F-serratus_M_contig148:651375..6514291622929455.5847821-CDS-F-serratus_M_contig148:651375..651429Fucus serratus maleCDSF-serratus_M_contig148 651376..651429 +
1690962861.0927162-CDS-F-serratus_M_contig148:651375..6514291690962861.0927162-CDS-F-serratus_M_contig148:651375..651429Fucus serratus maleCDSF-serratus_M_contig148 651376..651429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig148.3318.1prot_F-serratus_M_contig148.3318.1Fucus serratus malepolypeptideF-serratus_M_contig148 639937..651429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig148.3318.1

>prot_F-serratus_M_contig148.3318.1 ID=prot_F-serratus_M_contig148.3318.1|Name=mRNA_F-serratus_M_contig148.3318.1|organism=Fucus serratus male|type=polypeptide|length=200bp
MAPACWCLLLTFALLLLSKSIDAFFRPRIVLNGRHSNTPIMNKFTCVMSV
PVERRPFATQLSQGILGVLGLGVASERVQAYEKEYLSDPTPEFKAMEAKQ
SEFANAQRAYKNEFVKQLDAFLAVKTDDDAVDTLNTMSRTVVQRGGLPES
VRINDLLKTCRKKKAEMKGSGKWSTPVQIAYETLVQVTNRSVIPLQSGS*
back to top

mRNA from alignment at F-serratus_M_contig148:639891..652566+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig148.3318.1 ID=mRNA_F-serratus_M_contig148.3318.1|Name=mRNA_F-serratus_M_contig148.3318.1|organism=Fucus serratus male|type=mRNA|length=12676bp|location=Sequence derived from alignment at F-serratus_M_contig148:639891..652566+ (Fucus serratus male)
TATATATACTGTACAGGTCGAGCAAAACTTGCACGAACAGCAACCCATGG
CGCCAGCGTGCTGGTGTCTATTGCTGACATTTGCACTCTTGCTTCTTTCG
AAGAGCATCGATGCATTTTTTCGGCCTAGAATCGTTCTGAACGGGAGACA
TTCAAACACTCCGATCATGAACAAGTTTACATGTGTCATGAGTGTTCCTG
TCGAAAGGCGGCCGTTCGCGACGCAGCTCTCGCAGGGAATTTTGGGCGTC
TTGGGGCTTGGAGTAGCGTCGGAGCGAGTGCAAGCCTACGAGGTCAGTCA
AAGGGTTGTCTTCTTCGGGCTAGAGTGTATTCCTTGTGCGCTTCTTGGCC
ATGTTTGTCCCTATCGAGCTTCATATAAGCTACTACAGGCTAGTACTTGC
CTTCACCCGTCAGTACGTTTGTAAAACCGTATCTTTGCATTATCCACGAT
TCAATATAAACAAGTCTTCACCTGTGTCTTACATACCAGGTACCAGGTAC
TCCGGAGTATTAATATTATTAGTATAGCCTGTACCAGTGCGGCGTACTCA
AGTCCCCAAGTACAGTACAGTACCCGGTATATCTATACAACTGACTGTAG
TTCTAAGTTTTGGTTCTATTATTAGTACGTACTACACAAAATTCGACTTC
ACGGTCGACGAGAGATAGAAACGGCTGAATCCTTCTCGCGAGAAAAATGA
AGGCAAGCACCGCAGAAGGAAGGTGGATGAGAAATCCTGTGTGACCTCCC
TCCTGTGTGGCTGTCTAACAAGCCTGACGTCCAGAATAAATGGGAAAAAA
ACACACGCACACAGACAGAGATGAGATGCCTGTAACAGTAATACTGTAAC
AGCCGATGTTCACTTTCCCCAGATTCAAAATGTTGATCCTCGGATGGTTT
GGATGCATTTCTATTTTGCTACATATACAATGTAGAGCTCGACTAATAAT
ATTACATACTGGTAACCCAATACGATTACACTTAAAAGCAGGTGATGTCT
TGATTTGGGGTCGCAGGAAACAAAGGTTTATGATTTACCTACATTTAGAA
GTTCATGTCAAAAAGATGTGCGTTTTACTGGAGCCCGAATTCATACTATT
ATATTAGTATTATTTATTATTAGTATCAGGCACTCCACTCTAGACTATAT
CCCAACTGCCAGGTGTGCATCAATATACAGCACTGTAACAATGTACCTGG
TACACGTCGTAGCGGAGCTTGTTGTATTTTCCGTTATACAGTATTATTGT
TGTTGTATTTGCAACCAAGCTATTAATAGAGCGTGGTACAGACAGACAGA
GGTCAGTATATTTCTTATAAGTATTGTTTTGCAAAAATATGCACCACAAA
CGATGCAGTCTACAATTTTCAATAGATGTTGTAGCGCTCTAGGTCTAGAC
TAGTTCTGTAAGTCGAGTACCGTAGTTGTGTACTTGAACGTAAGGTTCTT
TACCGTATGTCTAATTGTCCAAATTCCTTTTTCTTTTTCCCATCTAGCCA
CCATATTTCATCGATCTGCTGGAGACCCACAGATCTACTGGAGACCCACA
GATCTACTAGAGGCCCATAGATCTGCTAGAGACCCGATCTACTGGAGACC
CGGCGCAGTGGTCAAGGAGAAGTTGAATTAACAGCGTGCTATCGGTGGCG
GTAGTAATAGATGGAAATCATGAGGTGGGACAGGCAGCTGAAGCCCTCCA
TTCCGACACCATCGATCTGCTGGATAATCGGTGCAGCGGCCGACTGGTTA
CTGAGCCCACGCAGGCTCCGTCTAGTGCGCATGCAGCATGCGCGGGTCCG
CCTAGCGATTTCAACGGAAACGTCCGGAATTTCGGTAATGGCGCCCCCCA
AGTAAGTGTAGGATTGCACATTTCGGTAGGGTCGTCCAACCGCTTCGACC
CGCATCGTCGTCGACGGTGCAGGTGGTGAAGTGCGGGAATGCACCGGACT
GCTGTTTTCTTCTCAGATACGATGAGAAAGAAGGCCTGACGAGTCTCCAA
GATGAGTTCCATTATCTTAGCAAGCCCCCGCGGCTATATCACAAACTATG
CAGTCGTCATCCACGTACAGCATCTTCGACACCGTACGGCGCACGTAGTC
CATAGTCGTCTCCGGTCTCATCGACGTCGGCGGTTTCTTCGTGTGCACCA
GCTCAGCGAGGACGTCCGCATCCTCGTTGAAGGTCACAACACGACAGCGA
AGAATATGCTGAACAACAATGGGAATAGCACACATTATTGCCATAGATAG
TTCTTGCTCCACTCCCGACCAATCCGAGCAGACGTCATCGTCAGATCACA
CACAAGCTCTCATCATATCTGGAATGTCAATTAACTGCCATCGTATGCGT
TGGTACTCCGATGCGAATGAGTACCTGCCACAGAAGGGTGCGGTCGACAG
TGTCGTACGCCTTCTGGAGGCACTAAACAATTAAGCTCAAGAAAAGTGGC
CCTCTTGTCTTCCAACAAATTTTCTGCAACTTTCGCACCAAAGGCATATG
TCCGTGGTCGAGCGATCCGGGCGAAACCCAAACTGCTCCTCCGCTTACAG
TCCCTTTCCTAGCGACCACTTTAAGGAGCACCTTACACGTGTGGGACACA
AGTGAGATGCCTCGGAAGTTTCCGCACTCCATGTTACCGTTTTTCATTCG
AGGTGCAAGTAAGGTAATGACGGCGTCCTTACGATAATCCAAATGATGAG
TCCGTGTACCCCCGCACGTAGTTCTCAAATACTCGAACGACTGCAGCAAT
TCGCACTTTCTTCAGTCACTAACACGCATGTATGGTGGCCCTCAGCAGCT
GGACATCCAGGTGTCCGGTTTCAATCGCTACAAGGATGCGTGCACCGCCT
CAGTCGCGGTCCGTAGTTCATTTTTCGTCTGGTCGTCTCTACTCCGACCT
CGCCTTGGTCTCCTGCGCGCCTGGGGTGGGATCACCTCATGATGGCGGCG
GTAAATACAGCTTCCACGTCGTCCATACCATTCTTCTGGAAGGTTTGCCC
TAAGGCAAGATAACGTGCCTTCCAACGGTTGTGGCTACCACCTGTCGAAG
TTGAGGATCAGTGATGAGGCGCCTATTGATAGTAGTCGGTCGACTGGCGG
CTTAATTGCCGTCCTGAACTGTATGTTACCAGCAAAATACCCGTGAAGCT
TGACGAGGCTGCGGTCCGAAATAGGAAGGAAGGAAGGAAGGCTGGGGGTG
CAGCGTAACGTTCTATTTGATGACGCCTGGTTACGTAGTGCTTGGCAGCT
TAACACACGGAAGTTAGAATGACGTGATTTGCTGTACCATATGATCTGAT
AAATTCCGTGCGAGCTAAAGGTGCAACAATTGACAAATTGAGAGATAGAT
CGCTAGATCGATGAAGTAAATGACAGCTCGACTTTCTTCCTCAGGTTTAT
TTGTTCTCACCTGTACCTCCTGCACCTGCTTGCTCATCCTCTTGTGTTGA
CTAACGATCTACAACGGCATCAAAAGGATAAAACGCTCTCAACGGATCTA
TAACGATCTCAAAGAATCTATCACGATCTCAAAAGATCTCTAGCGATCTT
TAACGATCTACTGTACTACTGTACTCATCTTTCATCACGAAGCAAGATAT
GTTATACAATATTCTATTCATGACACTACGCTAAATAACATGATACAGTA
ACTAATACTATAGTGTATAATAAATAGTGTGATGATTGTATTGGTGTCGC
ATTATGCCCTAGAATATTCACTCCCTACGAGGATAACAAACAACAGGTCG
TGAGCTCATGCGACAACCCCCACGGACCTTACCCACAGAAGTGTCATGAT
GTACCCGGAGTATCTGTATATCATGGATTTGAAGGGGGAACTAACTACCG
GTAGCTACGAGTCGTTATTTTCGAGGTATTTTGAGTGTTACGACCATATA
TGATTAATATATACCAGTATAGACTATTAATATAGAGAGGTATTCTCGCG
CGGCTTTCTTTTATCAGTGCAGCCAGCGTCGCTTTGCCGTCTTAAAACGT
TTGAGTGTCTCTATGATCGACTTTGTCTGCCGATCCAACCTCAACCTTAA
CCTTGTCCGCCTCTTCCTCTTCCTCGTCCTTTTCCTCTTCCTCTACCTCT
ACCTCTACCTCTACCTCTTCATCTACCTCTTCCTCTTTCTTTTTCCTCTT
TCTTTTGTCTTGTCTTGTCTTGACTTTGTTCTCAACAAAAAAAGTCGGCT
TGACTCTGTCTTCGCTTGCTCACTGGTCAACGTGTCAGTACAGTACAGTA
AAGTACAGTGCAGTACACGTCTACCTGGTAGGTTATAGTCTAATGTAGCA
GTTCTTCACTCCCGCCTGATCACAAACATCCGGGGGCCATATACCATTAC
ATTCTGCCATTCTGTAATTTTTTCTTGTTGCCCTCTGGCGCACGCTGCCA
CGCGTCCTTCAACCTTCCAGACACGATTCGTTTGGGCAGTCTCAAGTCTA
TGGTCGCCCATGCAGGCCAGAGGTCGTCTATATGCTCTCACATTTGATCG
TTCGGTCGGTTGGAGAGCGTTGTTGTACGAGAGAATGCGGATGGTGGCTG
TCTCTCGACCTGCAGCATCAGCATCGGCATCTTTCGACGTGTTTGTTGTG
GCATCAACATGAATTTGGGGGGAATCTCGACCACCTTAGGCCGTCGTACG
GAAGATGCTCGACCACCTTAGCTTAGAAATAGACTAACCATCCAATTCAC
CATCCAATCCTTGATTTACAGGAGCAGGAGGCTTTTGCTTGTCTTCGGGT
GGTCGTCCGTGTCGTCCGTCGATATGCCGCACGTATGAATTGAAGCTCAT
TCCATGCATCCCGCACGAATCAATCGGTCAATCTGCTTTGGACTTTCACT
GACGGCGGTCTCAATCAATCCCGCCAAGTAGATGGAGGCGATCTGACGAT
ATGATACGATACTTTCGTTCCGAACAATTTAAGAATATTAAGAATATCGG
TGTTGGTGTTGGTGTTGCCGTCGTATGCAGAGTCGGTACGGTACGCCCAT
CATGTTTCATGTTTTGTCTTCCTGTCCGAGAGAGTCAAACGACCAAATGC
GCTCAAGAGATCAACAAATATCGCCATCATCACCTTCAATCGGAGCGACG
ATCGCGATAAGATACAAGCCATGTGTCGCACACTTTCCAGAGCTGTTAGA
GCTGTTAGAGCTGTTAGAGCTGTTAGAGCTGTTGGAGCTGTTTTACATCC
AACCCTCGCCTCTCGCTTCTCTCAAAAGCGGACAAGGTCGGCGACGATGT
ATGCGTCCCGTTTGTATGTATGTATGTATGTATGCTTGTATGTTTATATG
TTTGTATGTTTGTATGTATGCATGTATGCATGCATGTATGTATGTGTTTG
CTTGTTTGTTTGTATGTTTGTATGTAATCGTGTATGTATATTCATTAAAT
TGATATGTATGCGTGTGTGTTTGTGTGTTTGTATGTATGTATGTTTGTAT
ATTGGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGGTCAT
AACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCG
CGGTCAGCTGAACAAGGAAAATAATACTCCCCTGTCCCCGTGCGTGCCTG
AGAATTTGGTCTCGCGAGATGGGTTCAGCCTTCCCGTCCCGCGTCCGCCT
GCTCATCTCCATACTCAGGCTGAATTTGGTGCTTACTTACGGGATTCCTC
CCGAGTTCCGCGGCGGCGTCCATTTATGAAACCGTCATACGCCATCGGGT
TAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTG
CCGAGAATCCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACG
AGTGCTGCCTTAGCAGGTCACTATGGACCAATTAATATTCGCCTCTGTTT
CCCACCCCCACTTTTGGTATGAAGTGGGCATGTTGAAAGTAACGGCGTGA
TGTATATGTTTATGTATGTATGCTTGTATGTTTGTATGTTTGCATGTTTG
TATGTTCTCGTTTGTTTGTATGCTTGTTGTCTGCATGTTTGTTTGTATGT
ATGTATTCTTGTATGTTTGTATGTTTGTATGCTTGTATGTAATGTTTGTA
TGCTTGTATGTTTGTATGTATGTATGTAAGCTTGTATGTTTGTATGTTTG
TATGTATGTATGCTTGTATGTATGTATGTATGTATGCTTGTATGTCTGTA
TGTGTGTATGTATGTATGTCTGTTTGATGTATGTATGTATGCTTGTACAA
GTATGTTTATTTGTTTGTATGTATGTATGTTTGTATGTATGTTTGTATGT
ATGTATGCTTGTATGTTTGTATGTGTGTATGTATGTCTGTTTGATGTATG
TATGTATGCTTGTATGTTTGTATGTATGCATGTATTAATAATGTATGCTT
GTATGTTTTTTATGTTTGTATGTATGTATGTATGTTTGTATTATGTATGT
ATGCTTGCATGCATGTATGGTCATCACACATAGCAGAGTATGGATCAACC
GGGTAAGGCTGCCAACCCTGCTCGTGGTCAGCTAAACAGGGAAAATGAAT
ATTCCCCTGTCCCCGTACGTGCCTGAGAATTCGGTCTCGCGAGACGGTTT
CAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAAT
CTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGGCCATTT
ATGAAACCGCCATACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGA
AATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAGGGCCA
GTAAACCTCAAGATAGTTCCGAACGAGTGCTGCCTTGGCAGGTCACCATG
TACCAATTAATATGTCTTTCCCACGCCCACTATTGGTACGGAGTGGGCAT
GTTGAAAGTACCGGCGGTATGTATAAATGTATGTATACCCACTATTGGTA
TGAAGTGGGCATGTTGAAGGTACCGGCGGTATGTATATATGTATGTATGC
TTGTATGTTTTTATGTGCATATGTATGTTTGTATGTATGTTATATTTGTA
CCAGGTATGTATGTATGTATGTATGTATATATGTATGTACGTATACTTGT
GTGTGCGTATGTATGTATGCTTGTATGTTTCTATGTTTATGTGTTTGTAT
TTATGTATGCTTGCATGTGTGTATGTATGCTTGTATGTTTCTATGTATGT
ATGTATGTATGCTTGCATGTTTCTATGTATGTATGTTTGCATGTTTGTTT
GTGGTACTGTAACGCAACGAGGATTACCACGGGAAAGCAACGAAAGCGAA
ATGTTGAATATCAATGGGGATACTGCACTATTCAATAGCATGCATCCTCG
GCGCTGTCCCTGCGCTACCTCGAACTACTATCACTAGAGCATACGGCATC
GTCATTTTCCCTCACAAGCTCTCAAGGGAGAATTACTATTATATCACAAT
CTGCGGTGTGGCAACCCAAACCTAAATGCTTTCTGTCGGTCGACAAATAT
GTAATGTAACAATAGCAGTACGCGCGCTCCCCTTTCATTTTCTTCTAGTC
TGAGCACCGTGGATATCATATTCATCCTCGAGCGGCGCCGGCGGAACCCG
CATTGCGCCTCTGGCAGTAGTCCCTCGGCCGTGCAGTAGGTGCCGAGCCT
CGTAGCCACTATATTTTGAGGAAATCATATCCGGCGTGGGTAGTGAAGAC
AAGTGAAACACTGCGGAGTAGTTTCCGCATTTTGTCTTGTTCTTTCTTCT
CTTCTCTTCTTTTCTCTTTTTGAGTTGCGTTGCGTTGATAGAAACCATCA
TATTGGTAGCTTGATAGCATGATTGCTTAATATGTTAATAGCGTCATAGT
CCTAGCTCAATCACCGGGAAGAACTCCCGGAGCACAGTCTTATCGTAGCC
CAAGTTTAAGAGTTCCACCGGGAGTTAATCTGGTCCCCTGACTTCACGTT
AGCCGTCGACGGTGACCCTCAAGGCGGCGACTTCTTCCCTCTCCGACGGC
TCGGCCCCGAGGGATGGGCGATAGGCTGCTGTGGAAACCTCCAAAGATGT
CGGAATTGCGCTTGTCCGACTCCGAGTTCGAAAGGGTGTTGGAAGTGTTG
GAAGAACACCATTTTCCAATAAGGAGTTCTTAACCATTCACCCTGCAGGA
ACCATCTTAAGGACATCTTAAGGATTAAGGATTAAGGATTAACTCATGAC
TTCCACAGCCCATCTTGAATGTAATCCACTGGAAGCCCACTTTCCGCGGG
AGTTCTTTTTTGCAGGGCTTGAGCCGCTGGAAGATCCCATGTTGAACGCG
CTTCTGGCTAATGCATTTTCCTCCAGCCCCTGGATGTACCTTAAATTATA
CCTGGTATTACATTACCTCGTGTACGCGGCGGCACGGACACTCGAAACGT
TCCAATATGCGCCTCCGCTTGCTGGATAATCACTCCATATAACTACAACT
ATTACTGCCTCTAACATAATTTTAAACGATTTTTGTCTTTTTGTAAACTT
TTCAAAAGGCGTTTTTTGAGGCATACTCGTAGCTCTCGCCTCCTCCTTGA
GATTTTGGTCTCGCAAGTTGGGTTCAGGACCGGATCTGGAGCTATTGCTC
GGTCAGGGGGTACTATTGCCTCTCCTTCCTCCCTCTTCCTCCCTCTTCCT
CCTCCCGCTTTCCGGGACTGTTACTGTTACTGTTACTGTAGGGCAATGTT
GAATGTTTTCCGTTACCGATGTACGTGAAATAGTTTAGTATAGCATAGTA
TAGTTGAGTATAGTGTAGTATGGGCCTCGAAACTCTACCTGGGACCTGGT
ATGAAATGGCGTAGAGCTAATACTCGCGCCTATTACTATTTAATAGGCTA
CAGTACTATTAATAGAGTACTAGAGTACAACTCTTTGCAGGAAACAGCGG
AGGAAATATAACGGTCATCGTCATTCTCAGATCAGGGCCAACCTGTCGAT
GCTGATGGCAACTTGAAAGTACAGTAGTACCGTACGGACTGTACCTACGG
ACGTTGACGTTGATGTAACTGGCATCGCGAGAAAAATAGCTACCAGGTAC
TTGTTGTAATGAGCTTGAGATAGCAATAAAGCAGAGCGATGAAGCGCTAT
GGAGGAGAGCGATGAATGTGTGTGAATCGATCACATATATACAATAGCAT
AGTATGGTATCGCCGCCGAATTACTACTACAGTACCGTATCAATAGTACT
GTTTACAGTATGCAATACGATTACTAGACCCTACAGAAATATTCCGGCCG
ACCATTCCAAGCCGAGCTTAGCTTGCAAGAGAGTAGATGGTACATGAGCC
TTACCGTTACACTCTTAGAGTCTTTAGTGGTACAAGTATATTCTGTTGAT
GAGAGCTTCCGAGTACTTGGACTTGATTGACAACACACTAAGCCTTTTAA
TAATAGTAATAATAACATTCCGCGTGTTTCTCTCTCGAGCAACAGTTAAT
ATTTAATACTTGAAGTTAATACCGGAGTATAGTGTTTTGTACTCAGTATA
CGAGCACAGTATATATGGATCAGGTACGCTGGAGTCGGGCCTGAAGGTAT
TCCCCGAAGATTTGATTTACAACCAAGAGCATTGATACTGCTGTGCATGG
ACTGACTACGGCTGCAAACGGTCATAGTCTCGGATATATATCCCCAAGGA
AAAATGAAGACGCAGTCACGCAAGCCTCTCGAATGACGCATCAACATTAG
CTACCTATCTATTAATAGAGGTCCAGCTGATCAGCTCAACCAAAACAAGT
AGTACTTGCCGCACTGAACATTTGCCTGACTGCATGTTTGCCGTGTTTGC
AGAAGGAATATCTTTCAGATCCCACTCCGGAGTTTAAGGCTATGGAGGCC
AAGCAAAGCGAGTTCGCCAACGCGCAGCGAGCGTATAAAAACGAATTCGT
GAAACAGCTTGACGTGAGTACGTAGCATCGCGTGTAGAGTATAGTATAGT
ATAGTGTGCTGGTATATTTGTTCGACCAACGAAGGTCCTATAATGTGACT
TTGAAGACAAAGACGATCGTTATTAATCACCATCTGATACTTGGATCAAG
CGTATAGCGCGTGACAACGATTGCAGCAGCCGTATAGAGACAGACGGTAG
CTTTCGAATGCCGCTTGCTGTGTGGGAAGTGATTGCATGATGAAATGATT
GCATGTGCCGCTTTCGACGTTCGTTTTACTGTTACTGTTCGTTTCAATGT
CACCTTCACCTTCACCTTCACCTTCACCTTCACAGGCGTTTCTTGCTGTG
AAAACAGACGATGATGCTGTCGACACTCTAAACACCATGTCGGTGAGTCA
CTACCGCAATCAATCAATCAGTCAGTCAGTTTGTTAATGACTGGGTGGCG
CTGCCAAAATAATATCGTACATCCTACTCCGTACCGGTACATCATACGAG
TACAAACACCTCTAATAAGAGTACAAATATAGCTCTATACATTGGACTTG
GAGATTTAACTATTAATAGTTCATCCTTGGGACGTATTTTCTCACCATCG
TACGAGTACCTCGTACCTAAATATGATCAAAATGCAATAGAGCTATTAAT
ACGGTAGTTGTTTTACAGGGTAGGGTAGGGTACACACGAAGGATTACACG
CCAAGTGCCTGGTATTAATAGTTTTTTCTGATATTGGAAGAGCTACGTAG
TACTTATTTACAGTCTAGGACTTCATCTAACATACGAGTACTTATTATGA
TCACTGCACTACTTTAGCACTATACTATGCTATGCTACATTTAATATACC
AGCTCTATAGTATATAATATACTATTAATACTGTACAAGCTCTCTCTCCC
GCAGCTCCAACCAGCGACGGCAAAATATGTTAATGATACAACTGTAGTAC
TGGAACTACTGATAGAGCTCTAGACTATTCGTATAATAGCTCTAGTACAA
TAATGATTTGATTGCAAAATATAAACAGACCCTTTGCTATGTTATGTTTT
GTGTGCGGTGTACTTTATTTGACGGTGTATGGAAACGGAAACGAAACCAA
TTATGATCATCAATCATCAAAAATATTCAATCATCGAAAATCCTCAATCC
TCAATCATCATGATCATCAATCATCTCAGCGAACGGTAGTACAGCGAGGC
GGTTTGCCCGAAAGCGTCCGGATCAACGATCTTCTCAAGACTTGCAGGAA
GAAGAAGGCGGAGATGAAGGGTAGCGGGAAGTGGAGCACCCCAGTCCAGA
TAGCGTATGAGGTGCGAATACCATCAATACCATCATCGACCATACCTGGT
ATAATATCTATCTATCTATAGAATACTCTATAATGTCTTATGATATCGCA
TCGACAGCAGCCAAAACTGTTCGTGTAGCTCTGCCTTCGAACTGTAACAG
GCAGGCCATAACCTACTGTACGAACTACCTCGTAGCTCTGCGTCTTTATG
TTGCCTCCGTAGCCCTTCCTTCCCTTCCCATACCTCTAATACCATTACAC
CATTACCGCCTTGACCTTCTGTACCTTCACTTCAGACGCTGGTCCAGGTC
ACCAACAGGAGCGTGATTCCTTTGCAGAGCGGGAGCTGAGGGAACCTTCA
TGGTTCATACTACGATGACATATCGAATGATACTGTCTCGTCAATATTGA
TGCAATGACAAGACGAACTATGAATATGTTAGGCATGAGCATGAGCATGA
CAACAGTGCTGCGACAATAAGAGCGTCTAGCGGCAGCCTTCAGCCTTCCT
TCCGTGTAATCGAGGGTTAGAAAGAGGTTTGCCACGTCTGTGAGAGGCCA
GGGACTCTAAACAGGCCGAAAAGCTTTGCCCTTTACTCTTTTTTAATATT
ACCACCGAAGTATTAAACACTATCATGCGATGGAAGATTGGGAAGGGTAG
GTACTAATATTAATAAAATACAGTAGATGTGCGGTACCAAGGATAAACTT
ACTAGGCCAGCCAGGGTTCCTATTTACAGGGACAATGATCATCCTCAAAT
CGGACTTTGTCTTGCCATTTCTTCCTCCGGTGATTTCTCTGATACACTTC
AAGCAATTGCCATCGTGTTTAGTCCGACTAAATTAGAGATCCCGTTATAC
AGTGTAGCCGCTACAGTACCTGTTGTACAAGTATCATATGGAGAAAACGC
TGCTTATAGAGGAGAGGTTGAGTTGCGCAGCTTGCGTCGTTGAGACATTA
GAGGTTAATTACCTTAATTACCTTGTGCTGTGCATAACATTTTGGTTCTG
CAAAAAAGTGGGATAATGTCTATAATGTCTACTACACGCAGCTCCAGAGG
AGAGTACAGACAGAGAGATAGACAGAGACATGTGTCCCTCCACACACGCC
ATCTTTTTATTTTTTTATTTTAAAGAGGATCAAGCTCTAGACCTACTATA
GCACTGCGATGTACCAGTATGAACTATTTGTGTGAAGTGGTATGTAATAA
TGTACAGTATAAACTACCAAATGGAGGGGGTGGAGATTAAGATTGTTGAG
GAATTGACGATAAAAAAAAAGGTGGGACGATCGAAAAGGTGAGCTCTGGT
TTAGTAGCTATTAATAGCGACGTAGACGTTCAAGTAGGCCAAGCCTTTCG
TCAAATGTACCAGTACAGATATACGAAGTACTGTATAGTATATATCACGT
ACAGAGTTTTTTGAAGTACTTGGTATAAGGTATATGTGTAAAGTACATGC
ACTCCGTACATCGGAGGAACCGTTCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig148:639891..652566+

>mRNA_F-serratus_M_contig148.3318.1 ID=mRNA_F-serratus_M_contig148.3318.1|Name=mRNA_F-serratus_M_contig148.3318.1|organism=Fucus serratus male|type=CDS|length=1200bp|location=Sequence derived from alignment at F-serratus_M_contig148:639891..652566+ (Fucus serratus male)
ATGGCGCCAGCGTGCTGGTGTCTATTGCTGACATTTGCACTCTTGCTTCT
TTCGAAGAGCATCGATGCATTTTTTCGGCCTAGAATCGTTCTGAACGGGA
GACATTCAAACACTCCGATCATGAACAAGTTTACATGTGTCATGAGTGTT
CCTGTCGAAAGGCGGCCGTTCGCGACGCAGCTCTCGCAGGGAATTTTGGG
CGTCTTGGGGCTTGGAGTAGCGTCGGAGCGAGTGCAAGCCTACGAGATGG
CGCCAGCGTGCTGGTGTCTATTGCTGACATTTGCACTCTTGCTTCTTTCG
AAGAGCATCGATGCATTTTTTCGGCCTAGAATCGTTCTGAACGGGAGACA
TTCAAACACTCCGATCATGAACAAGTTTACATGTGTCATGAGTGTTCCTG
TCGAAAGGCGGCCGTTCGCGACGCAGCTCTCGCAGGGAATTTTGGGCGTC
TTGGGGCTTGGAGTAGCGTCGGAGCGAGTGCAAGCCTACGAGAAGGAATA
TCTTTCAGATCCCACTCCGGAGTTTAAGGCTATGGAGGCCAAGCAAAGCG
AGTTCGCCAACGCGCAGCGAGCGTATAAAAACGAATTCGTGAAACAGCTT
GACAAGGAATATCTTTCAGATCCCACTCCGGAGTTTAAGGCTATGGAGGC
CAAGCAAAGCGAGTTCGCCAACGCGCAGCGAGCGTATAAAAACGAATTCG
TGAAACAGCTTGACGCGTTTCTTGCTGTGAAAACAGACGATGATGCTGTC
GACACTCTAAACACCATGTCGGCGTTTCTTGCTGTGAAAACAGACGATGA
TGCTGTCGACACTCTAAACACCATGTCGCGAACGGTAGTACAGCGAGGCG
GTTTGCCCGAAAGCGTCCGGATCAACGATCTTCTCAAGACTTGCAGGAAG
AAGAAGGCGGAGATGAAGGGTAGCGGGAAGTGGAGCACCCCAGTCCAGAT
AGCGTATGAGCGAACGGTAGTACAGCGAGGCGGTTTGCCCGAAAGCGTCC
GGATCAACGATCTTCTCAAGACTTGCAGGAAGAAGAAGGCGGAGATGAAG
GGTAGCGGGAAGTGGAGCACCCCAGTCCAGATAGCGTATGAGACGCTGGT
CCAGGTCACCAACAGGAGCGTGATTCCTTTGCAGAGCGGGAGCTGAACGC
TGGTCCAGGTCACCAACAGGAGCGTGATTCCTTTGCAGAGCGGGAGCTGA
back to top