mRNA_F-serratus_M_contig1479.3307.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1479.3307.1
Unique NamemRNA_F-serratus_M_contig1479.3307.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1479.3307.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.830e-16
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    4 LTADDCCVGRIRDANVYCDDSEVAPCIIGSGSICI---SNGLSGLENDGV-CCVTGCPQCGGSGCGSEAQRVGLPSSDCCRGPIISSG 255
            L ++ CC G I+ +  YCDD+  APCIIGS    +   SNGL G++ +GV CC   C QCGG+GC +     GL S  CC G I +SG
Sbjct:  508 LGSESCCGGGIKASGAYCDDTNEAPCIIGSRPTTVETCSNGLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASG 595
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BLAST of mRNA_F-serratus_M_contig1479.3307.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.840e-16
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    4 LTADDCCVGRIRDANVYCDDSEVAPCIIGS--------GSICISNGLSGLENDGV-CCVTGCPQCGGSGCGSEAQRVGLPSSDCCRGPIISSG 255
            L    CC G ++ ++ YCD++  APCIIGS         + C SNGL G++ +GV CC  GC QCGG+GC +     GL  S CC G I +SG
Sbjct:  229 LDGSSCCGGGVKASDEYCDETNEAPCIIGSRPTPSPTSANTC-SNGLEGIDGNGVVCCPLGCGQCGGTGCNTSGAAAGLDGSSCCGGSIKASG 320
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BLAST of mRNA_F-serratus_M_contig1479.3307.1 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.140e-12
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:    4 LTADDCCVGRIRDANVYCDDSEVAPCIIGSG-------------SICISNGLSGLENDGV-CCVTGCPQCGGSGCGSEAQRVGLPSSDCCRGPIISSGV 258
            L ++ CC G ++   +YCDD+  APCIIGS              +   S+G  G++ +GV CC  GC QC G GCG+     GL S  CC   + S G+
Sbjct:  374 LGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPDTDDVDSESADETQTCSDGTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGNGVKSLGL 472
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BLAST of mRNA_F-serratus_M_contig1479.3307.1 vs. uniprot
Match: D8LTS2_ECTSI (Similar to Gram-negative bacteria-binding protein 1, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS2_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 7.270e-6
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   97 SICISNGLSGLENDGVCCVTGCPQCGGSGCGSEAQRVGLPSSDCCRGPIISSG 255
            S+C +NG+SG+E+DGVCC   C QCGGSGC       G  ++ CC   I+  G
Sbjct:  199 SVC-TNGVSGIESDGVCCEISCGQCGGSGCSMR----GNGAASCCTSTILEVG 246
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BLAST of mRNA_F-serratus_M_contig1479.3307.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 50.4 bits (119), Expect = 3.220e-5
Identity = 27/84 (32.14%), Postives = 41/84 (48.81%), Query Frame = 1 
Query:    7 TADDCCVGRIRDANVYCDDSEVAPCIIGSGSICISNGLSGLENDG-VCCVTGCPQCGGSGCGSEAQRVGLPSSDCCRGPIISSG 255
            T D   +G   + ++   D+ V      +     SNG+ G++ +G VCC   C QCGGSGC    +  GL +  CC   + +SG
Sbjct:  494 TVDYLVLGHQLNTSLETGDAGVVEAFDSASVTTCSNGVQGIDGNGIVCCPMECNQCGGSGCTHAGRAAGLGAESCCGSGVKASG 577
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BLAST of mRNA_F-serratus_M_contig1479.3307.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 5.950e-5
Identity = 24/54 (44.44%), Postives = 30/54 (55.56%), Query Frame = 1 
Query:   94 GSICISNGLSGLENDGV-CCVTGCPQCGGSGCGSEAQRVGLPSSDCCRGPIISS 252
            G+   SNGL G++ +GV CC   C QCGG GC +     GL    CC G I +S
Sbjct:  444 GTETCSNGLEGIDGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCCGGGIKAS 497
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1479.3307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FQV4_ECTSI1.830e-1646.59Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JC43_9PHAE3.840e-1644.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G651_ECTSI1.140e-1237.37Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectoca... [more]
D8LTS2_ECTSI7.270e-647.17Similar to Gram-negative bacteria-binding protein ... [more]
D7FUJ9_ECTSI3.220e-532.14Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
D7FIC5_ECTSI5.950e-544.44Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1479contigF-serratus_M_contig1479:62925..63801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue8.6e-14
Seed eggNOG ortholog2880.D7FQV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size261
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929453.326869-CDS-F-serratus_M_contig1479:62925..630891622929453.326869-CDS-F-serratus_M_contig1479:62925..63089Fucus serratus maleCDSF-serratus_M_contig1479 62926..63089 -
1690962859.9619339-CDS-F-serratus_M_contig1479:62925..630891690962859.9619339-CDS-F-serratus_M_contig1479:62925..63089Fucus serratus maleCDSF-serratus_M_contig1479 62926..63089 -
1622929453.3433068-CDS-F-serratus_M_contig1479:63707..638011622929453.3433068-CDS-F-serratus_M_contig1479:63707..63801Fucus serratus maleCDSF-serratus_M_contig1479 63708..63801 -
1690962859.9728625-CDS-F-serratus_M_contig1479:63707..638011690962859.9728625-CDS-F-serratus_M_contig1479:63707..63801Fucus serratus maleCDSF-serratus_M_contig1479 63708..63801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1479.3307.1prot_F-serratus_M_contig1479.3307.1Fucus serratus malepolypeptideF-serratus_M_contig1479 62926..63801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1479.3307.1

>prot_F-serratus_M_contig1479.3307.1 ID=prot_F-serratus_M_contig1479.3307.1|Name=mRNA_F-serratus_M_contig1479.3307.1|organism=Fucus serratus male|type=polypeptide|length=86bp
DLTADDCCVGRIRDANVYCDDSEVAPCIIGSGSICISNGLSGLENDGVCC
VTGCPQCGGSGCGSEAQRVGLPSSDCCRGPIISSGV
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mRNA from alignment at F-serratus_M_contig1479:62925..63801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1479.3307.1 ID=mRNA_F-serratus_M_contig1479.3307.1|Name=mRNA_F-serratus_M_contig1479.3307.1|organism=Fucus serratus male|type=mRNA|length=877bp|location=Sequence derived from alignment at F-serratus_M_contig1479:62925..63801- (Fucus serratus male)
GACCTAACTGCGGACGACTGTTGTGTTGGACGCATCAGGGATGCAAACGT
GTATTGCGACGACTCCGAGGTCGCGCCTTGCATCATCGGCAGTGGTGAGG
GGTTTGGACAGAGTTGGTTGACAGCGACATCCTTCATCACAAGAGACGCA
TTTTACATATTTCATAACCATCATAATAGATGACGTGCTGCGATCGATCA
TACCGATGCAGGCACCGTGTGGTCAATGGTCGACGCTCAGTGGGGTAGTT
AAAGCTCTGTTAAAACAAGGCCATTGAATGTGCGCCACCACTAGAAAATC
CCACTTGCTCGTCCTTACTGTCTATCGCATGGGAACCCTCTCTCAAAAGC
GTAGTGCGAGATAACTTGTTGGCCTGCTTGGTAATAGAGCTAATGCCCTA
GCCACATAAGTTGGATTGCTTCAGGCCTAGAATCAAAGGTCTCACCCGAA
CATTTCCCGTTTAGCGTTTTTGTACAAGGCATACTCAATCCGGCTAATAA
TGAAGACGGGACGAGCTATAGCCAGTCTACTACTAAGTACTGCACCTTGA
ACGTTGTGAAGCTACCTATTAATCGATCGAAAACTTGGAACGGGAGCGAT
TTTGCGCAATTTCACCATCATCGTGGTTTTGGTGCTGCCCATCCAAGTGT
TACGTGTATTCGGTAACTTATTTCCCTTTGCTGGTCTGCTTCTTTGCTCC
CCGATCCATCAGGTTCGATATGCATTAGCAACGGCCTCTCCGGCCTCGAG
AATGACGGAGTATGTTGTGTGACTGGGTGCCCACAATGCGGCGGCTCGGG
CTGCGGATCTGAGGCCCAAAGAGTCGGCCTTCCATCCAGTGACTGCTGTA
GGGGACCCATCATATCCTCGGGCGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1479:62925..63801-

>mRNA_F-serratus_M_contig1479.3307.1 ID=mRNA_F-serratus_M_contig1479.3307.1|Name=mRNA_F-serratus_M_contig1479.3307.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig1479:62925..63801- (Fucus serratus male)
GACCTAACTGCGGACGACTGTTGTGTTGGACGCATCAGGGATGCAAACGT
GTATTGCGACGACTCCGAGGTCGCGCCTTGCATCATCGGCAGTGGACCTA
ACTGCGGACGACTGTTGTGTTGGACGCATCAGGGATGCAAACGTGTATTG
CGACGACTCCGAGGTCGCGCCTTGCATCATCGGCAGTGGTTCGATATGCA
TTAGCAACGGCCTCTCCGGCCTCGAGAATGACGGAGTATGTTGTGTGACT
GGGTGCCCACAATGCGGCGGCTCGGGCTGCGGATCTGAGGCCCAAAGAGT
CGGCCTTCCATCCAGTGACTGCTGTAGGGGACCCATCATATCCTCGGGCG
TGGTTCGATATGCATTAGCAACGGCCTCTCCGGCCTCGAGAATGACGGAG
TATGTTGTGTGACTGGGTGCCCACAATGCGGCGGCTCGGGCTGCGGATCT
GAGGCCCAAAGAGTCGGCCTTCCATCCAGTGACTGCTGTAGGGGACCCAT
CATATCCTCGGGCGTG
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