mRNA_F-serratus_M_contig1479.3306.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1479.3306.1
Unique NamemRNA_F-serratus_M_contig1479.3306.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1479.3306.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.410e-16
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   22 IIDGPCGPALTITLEWSETDSDLDLYVMEPGGSVVSFWSMVGSVGFLDMDVIMGPGIETYTIFRFLDPDSLDIIGDYQFQAIRFSGPIET 291
            + +  C P+LTITLEW+   SD+DLYV+EPGG VV F +  G VGFLD D   G G E Y I   LDP +  ++G+Y+     +SG   T
Sbjct:  432 VSNSACVPSLTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAAT 521
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BLAST of mRNA_F-serratus_M_contig1479.3306.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 7.220e-16
Identity = 42/90 (46.67%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:   22 IIDGPCGPALTITLEWSETDSDLDLYVMEPGGSVVSFWSMVGSVGFLDMDVIMGPGIETYTIFRFLDPDSLDIIGDYQFQAIRFSGPIET 291
            + +  C P+LTITLEW+   SD+DLYV+EPGG VV F +  G VGFLD D   G G E Y I   LDP +  ++G+Y+     +SG   T
Sbjct:  306 VSNSACVPSLTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAAT 395
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BLAST of mRNA_F-serratus_M_contig1479.3306.1 vs. uniprot
Match: A0A2P6JQ26_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas sp. MYb185 TaxID=1848729 RepID=A0A2P6JQ26_9PSED)

HSP 1 Score: 49.7 bits (117), Expect = 9.480e-5
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   52 TITLEWSETDSDLDLYVMEPGGSVVSFWSMVGSVGFLDMDVIMGPGIETY 201
            T TL W+ +  D+DL+V EPGG+ V + SMVG VG+LD+D ++  G E Y
Sbjct:  207 TATLTWNGS-GDVDLHVYEPGGAHVYYASMVGDVGYLDVDNVVANGPEHY 255
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BLAST of mRNA_F-serratus_M_contig1479.3306.1 vs. uniprot
Match: UPI001C45F83E (hypothetical protein n=1 Tax=Pseudomonas sp. MYb185 TaxID=1848729 RepID=UPI001C45F83E)

HSP 1 Score: 49.7 bits (117), Expect = 9.890e-5
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   52 TITLEWSETDSDLDLYVMEPGGSVVSFWSMVGSVGFLDMDVIMGPGIETY 201
            T TL W+ +  D+DL+V EPGG+ V + SMVG VG+LD+D ++  G E Y
Sbjct:  302 TATLTWNGS-GDVDLHVYEPGGAHVYYASMVGDVGYLDVDNVVANGPEHY 350
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1479.3306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3X5_ECTSI4.410e-1646.67VWFD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G5D6_ECTSI7.220e-1646.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2P6JQ26_9PSED9.480e-550.00Uncharacterized protein n=1 Tax=Pseudomonas sp. MY... [more]
UPI001C45F83E9.890e-550.00hypothetical protein n=1 Tax=Pseudomonas sp. MYb18... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1479contigF-serratus_M_contig1479:61187..62118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue5.9e-14
Seed eggNOG ortholog2880.D7G3X5
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size306
Cds size303
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1479.3306.1prot_F-serratus_M_contig1479.3306.1Fucus serratus malepolypeptideF-serratus_M_contig1479 61189..62118 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929453.2512522-CDS-F-serratus_M_contig1479:61188..613441622929453.2512522-CDS-F-serratus_M_contig1479:61188..61344Fucus serratus maleCDSF-serratus_M_contig1479 61189..61344 -
1690962859.9311981-CDS-F-serratus_M_contig1479:61188..613441690962859.9311981-CDS-F-serratus_M_contig1479:61188..61344Fucus serratus maleCDSF-serratus_M_contig1479 61189..61344 -
1622929453.2636893-CDS-F-serratus_M_contig1479:61576..616921622929453.2636893-CDS-F-serratus_M_contig1479:61576..61692Fucus serratus maleCDSF-serratus_M_contig1479 61577..61692 -
1690962859.9430025-CDS-F-serratus_M_contig1479:61576..616921690962859.9430025-CDS-F-serratus_M_contig1479:61576..61692Fucus serratus maleCDSF-serratus_M_contig1479 61577..61692 -
1622929453.2790556-CDS-F-serratus_M_contig1479:62087..621181622929453.2790556-CDS-F-serratus_M_contig1479:62087..62118Fucus serratus maleCDSF-serratus_M_contig1479 62088..62118 -
1690962859.9526541-CDS-F-serratus_M_contig1479:62087..621181690962859.9526541-CDS-F-serratus_M_contig1479:62087..62118Fucus serratus maleCDSF-serratus_M_contig1479 62088..62118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1479.3306.1

>prot_F-serratus_M_contig1479.3306.1 ID=prot_F-serratus_M_contig1479.3306.1|Name=mRNA_F-serratus_M_contig1479.3306.1|organism=Fucus serratus male|type=polypeptide|length=101bp
VSETAPCIIDGPCGPALTITLEWSETDSDLDLYVMEPGGSVVSFWSMVGS
VGFLDMDVIMGPGIETYTIFRFLDPDSLDIIGDYQFQAIRFSGPIETNFT
L
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mRNA from alignment at F-serratus_M_contig1479:61187..62118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1479.3306.1 ID=mRNA_F-serratus_M_contig1479.3306.1|Name=mRNA_F-serratus_M_contig1479.3306.1|organism=Fucus serratus male|type=mRNA|length=932bp|location=Sequence derived from alignment at F-serratus_M_contig1479:61187..62118- (Fucus serratus male)
GTTTCAGAGACAGCACCGTGCATCATCGATGGTGAGCGCTTTGGGCTCGT
TCTTCATATATCAACGAGTTGGAACATCGCAAGAGGCACTCGTTACTTCA
TAGCCCTGCTGTTGACGACGCGTTTCGATCGATCATACCGATCTGGGCGC
TGGGCTGCTATTGAATTTACGTGTAGCACAAAACAGTGTCGCTACCAACA
AGTGTTTCGTTGACGTCGTCGCTGAAAACACATCTCTTATTTACATCATA
ATATACTCTTTAGCCAACAGTTTGACAAACGGATCAGGCGACCCTTGCTC
ACCCCCCCAAAGTTATATTGACAAAGTTATCAGAGGCAAGTTGCATAGTG
CGTGCAACATATAGAGTACAATATGCAAGGAATCTCACTTTTACCACCCT
GATGTCATTTGTGTGCGGCTTCGCAGGACCGTGCGGGCCTGCGCTCACCA
TCACCTTGGAATGGTCAGAGACCGACAGCGATCTCGATCTCTACGTGATG
GAGCCCGGTGGCTCGGTTGTCAGTTTTTGGAGCATGGTTGGGGTAAGTGT
AAACTCGAACGGCGCCCGTCTGAGGCATGCTAAGTGGTTTTAAGGGTACC
TGCCGTCTTTCCGACTCTCTCGGAGCAGAAGTGTTTAAGGCGTGGGATTG
TCAGGTTGGTGACTGAACGATAAAAACTCAATAACCTTGAGCAGCCTTCA
TAATCGACGCTGAACCTCCATTCTCGCCTCGTGTTGTCATATAACGCTCT
ATCCCAATCGCCCTCTGCCTCAAGAGCGTTGGCTTCCTCGACATGGACGT
CATAATGGGTCCCGGCATAGAAACCTACACCATCTTCCGCTTTCTTGACC
CTGACAGCCTTGATATAATCGGGGATTACCAGTTCCAAGCAATACGCTTT
TCTGGTCCCATCGAGACGAACTTTACCCTTGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1479:61187..62118-

>mRNA_F-serratus_M_contig1479.3306.1 ID=mRNA_F-serratus_M_contig1479.3306.1|Name=mRNA_F-serratus_M_contig1479.3306.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1479:61187..62118- (Fucus serratus male)
GTTTCAGAGACAGCACCGTGCATCATCGATGGTTTCAGAGACAGCACCGT
GCATCATCGATGGACCGTGCGGGCCTGCGCTCACCATCACCTTGGAATGG
TCAGAGACCGACAGCGATCTCGATCTCTACGTGATGGAGCCCGGTGGCTC
GGTTGTCAGTTTTTGGAGCATGGTTGGGGACCGTGCGGGCCTGCGCTCAC
CATCACCTTGGAATGGTCAGAGACCGACAGCGATCTCGATCTCTACGTGA
TGGAGCCCGGTGGCTCGGTTGTCAGTTTTTGGAGCATGGTTGGGAGCGTT
GGCTTCCTCGACATGGACGTCATAATGGGTCCCGGCATAGAAACCTACAC
CATCTTCCGCTTTCTTGACCCTGACAGCCTTGATATAATCGGGGATTACC
AGTTCCAAGCAATACGCTTTTCTGGTCCCATCGAGACGAACTTTACCCTT
AGCGTTGGCTTCCTCGACATGGACGTCATAATGGGTCCCGGCATAGAAAC
CTACACCATCTTCCGCTTTCTTGACCCTGACAGCCTTGATATAATCGGGG
ATTACCAGTTCCAAGCAATACGCTTTTCTGGTCCCATCGAGACGAACTTT
ACCCTT
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