mRNA_F-serratus_M_contig1474.3288.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1474.3288.1
Unique NamemRNA_F-serratus_M_contig1474.3288.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1474.3288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1474contigF-serratus_M_contig1474:5015..5812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.8415563-CDS-F-serratus_M_contig1474:5014..52481622929449.8415563-CDS-F-serratus_M_contig1474:5014..5248Fucus serratus maleCDSF-serratus_M_contig1474 5015..5248 -
1690962858.2434652-CDS-F-serratus_M_contig1474:5014..52481690962858.2434652-CDS-F-serratus_M_contig1474:5014..5248Fucus serratus maleCDSF-serratus_M_contig1474 5015..5248 -
1622929449.8535302-CDS-F-serratus_M_contig1474:5731..58121622929449.8535302-CDS-F-serratus_M_contig1474:5731..5812Fucus serratus maleCDSF-serratus_M_contig1474 5732..5812 -
1690962858.2675135-CDS-F-serratus_M_contig1474:5731..58121690962858.2675135-CDS-F-serratus_M_contig1474:5731..5812Fucus serratus maleCDSF-serratus_M_contig1474 5732..5812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1474.3288.1prot_F-serratus_M_contig1474.3288.1Fucus serratus malepolypeptideF-serratus_M_contig1474 5015..5812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1474.3288.1

>prot_F-serratus_M_contig1474.3288.1 ID=prot_F-serratus_M_contig1474.3288.1|Name=mRNA_F-serratus_M_contig1474.3288.1|organism=Fucus serratus male|type=polypeptide|length=105bp
DGGSGAGNTTGLGGGRSAAGSPGSAPQAIQSPDHVRQKFVKSLQRKVDAA
ITDKSRFPFTDFMVYPPAPAFGGLLVRDHYYRRPCLVWVVELACNRYFPG
LHPPC
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mRNA from alignment at F-serratus_M_contig1474:5015..5812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1474.3288.1 ID=mRNA_F-serratus_M_contig1474.3288.1|Name=mRNA_F-serratus_M_contig1474.3288.1|organism=Fucus serratus male|type=mRNA|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1474:5015..5812- (Fucus serratus male)
GACGGCGGGAGTGGGGCTGGAAATACAACGGGGCTAGGAGGCGGCCGGAG
TGCAGCTGGATCACCAGGCAGTGCACCGCAGGTGCTTGTTTTTTGTTTCA
TTGTTGTCATGGGACTTTGACTATTGCTTTGCCGTGAGATATCGGGATAC
GTACACACAGCGTGTCGGCAAATGGCTTTTACCCTGTGGTGTAATGGTAA
CCTTATCACATACCACTTGTACAATGTACTACTATATGATTGTATCTTTA
TACGAACAAGTTGTACTGGTAGTTGAATTTTACCCTGTGGTGTATTATTA
ATAGTAACCTTATCGCATACTGGTACTCCGTACTTGTTCAACCTAAATGA
TTGTATGTATAGTCACACATATAGCAAGGGTATGGATCAACCTGGTAAGG
CTGCCAATTCTGCTCGTGGTCAGCTGAACAGCAAAAATAATATTTCTCTG
TCCGCGTTCGTGCCTGAAAATTTGGTATCGCGAGACGGTTGTATCTTTAC
ACGAACAAGTTGTACTAGTATGTACTGTACTGGTATTGTTCTTGTGTTTA
TCCGTATGGTCCAGGCTATACAGTCGCCTGATCATGTGCGGCAGAAATTC
GTCAAGAGTCTGCAACGCAAGGTCGATGCCGCCATCACTGACAAGAGCCG
GTTTCCGTTCACCGACTTCATGGTCTACCCTCCTGCGCCGGCATTCGGTG
GCTTGCTGGTCCGTGATCACTACTACCGGCGCCCGTGCCTCGTGTGGGTG
GTGGAGTTGGCGTGCAACAGATACTTTCCAGGTCTTCATCCACCTTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1474:5015..5812-

>mRNA_F-serratus_M_contig1474.3288.1 ID=mRNA_F-serratus_M_contig1474.3288.1|Name=mRNA_F-serratus_M_contig1474.3288.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig1474:5015..5812- (Fucus serratus male)
GACGGCGGGAGTGGGGCTGGAAATACAACGGGGCTAGGAGGCGGCCGGAG
TGCAGCTGGATCACCAGGCAGTGCACCGCAGGACGGCGGGAGTGGGGCTG
GAAATACAACGGGGCTAGGAGGCGGCCGGAGTGCAGCTGGATCACCAGGC
AGTGCACCGCAGGCTATACAGTCGCCTGATCATGTGCGGCAGAAATTCGT
CAAGAGTCTGCAACGCAAGGTCGATGCCGCCATCACTGACAAGAGCCGGT
TTCCGTTCACCGACTTCATGGTCTACCCTCCTGCGCCGGCATTCGGTGGC
TTGCTGGTCCGTGATCACTACTACCGGCGCCCGTGCCTCGTGTGGGTGGT
GGAGTTGGCGTGCAACAGATACTTTCCAGGTCTTCATCCACCTTGCGCTA
TACAGTCGCCTGATCATGTGCGGCAGAAATTCGTCAAGAGTCTGCAACGC
AAGGTCGATGCCGCCATCACTGACAAGAGCCGGTTTCCGTTCACCGACTT
CATGGTCTACCCTCCTGCGCCGGCATTCGGTGGCTTGCTGGTCCGTGATC
ACTACTACCGGCGCCCGTGCCTCGTGTGGGTGGTGGAGTTGGCGTGCAAC
AGATACTTTCCAGGTCTTCATCCACCTTGC
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