mRNA_F-serratus_M_contig1473.3286.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1473.3286.1
Unique NamemRNA_F-serratus_M_contig1473.3286.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 144 bits (362), Expect = 1.440e-38
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGSCLTYEGEINKLAVNVAFGR 207
            PSYPSGHA QNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELI+FEG+CLTYEGEINKLAVNVAFGR
Sbjct:  531 PSYPSGHATQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELINFEGACLTYEGEINKLAVNVAFGR 599          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 135 bits (339), Expect = 1.100e-35
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGSCLTYEGEINKLAVNVAFGR 207
            PSYPSGHA QNGAFATVLKALIGLDRGG+C+P+PV+P DDGL+LIDF GSCLT+EGEINKLAVNVAFGR
Sbjct:  412 PSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFGR 480          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.530e-29
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGSCLTYEGEINKLAVNVAFGR 207
            PSYP+GHA QNGAFATVLKAL+GL+RG +CF +P  P D+GL L+DF G CLT+EGEINKLAVNVAFGR
Sbjct:  470 PSYPAGHATQNGAFATVLKALVGLERGSDCFRDPKVPDDEGLTLLDFTGDCLTFEGEINKLAVNVAFGR 538          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 112 bits (281), Expect = 1.870e-27
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGSCLTYEGEINKLAVNVAFGR 207
            PSYPSGHA+QNGAF+T+LKAL+GL+RG ECF +PV PSDDGL L+ F+G CLT+EGEINK A NVA GR
Sbjct:  459 PSYPSGHAVQNGAFSTILKALVGLERGLECFNDPVVPSDDGLTLLPFDG-CLTFEGEINKYAANVALGR 526          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.190e-26
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEG----SCLTYEGEINKLAVNVAFGR 207
            PSYP+GHA QNGAFATVLKAL+GL+RG  CF +PVFP D+GL L+ + G    +CLT+EGEINKLAVNVA GR
Sbjct:  477 PSYPAGHATQNGAFATVLKALVGLERGSVCFNDPVFPDDEGLTLLPYTGDDGNNCLTFEGEINKLAVNVALGR 549          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: A0A3L7JPY7_9BACI (Phosphoesterase n=1 Tax=Falsibacillus albus TaxID=2478915 RepID=A0A3L7JPY7_9BACI)

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-13
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGSCLTYEGEINKLAVNVAFGR 207
            PSYP+GHA   GA  T+LKA     +     PNPV  S DGL L  +EG  LT EGE+NKLA N+A GR
Sbjct:  394 PSYPAGHAAFIGAIVTMLKAYF---KESYIIPNPVIASSDGLTLEPYEGPPLTIEGELNKLAYNIALGR 459          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: G4QEA8_GLANF (Phosphoesterase PA-phosphatase related protein n=1 Tax=Glaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064) TaxID=1085623 RepID=G4QEA8_GLANF)

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-12
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGSCLTYEGEINKLAVNVAFGR 207
            P+YP+GHA+  GA  T+LKA      G    PNPV  S DG  L+ ++G  LT EGE+NKLA N+A GR
Sbjct:  436 PTYPAGHAVMAGAAVTMLKAFF---NGDFEIPNPVTTSADGKTLVPYKGIPLTIEGELNKLASNIALGR 501          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: Q7X9V0_9PHAE (Vanadium-dependent bromoperoxidase 2 n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7X9V0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.290e-12
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFE-------GSCLTYEGEI 174
            P+YPSGHAI NGA+ T LKA +G + G +CFPNPV  +D+G + I ++       G C+  +G++
Sbjct:  480 PAYPSGHAINNGAYITALKAFLGYEAGQKCFPNPVVSNDEGTKRIKYKPSGREIVGECVNEKGKL 544          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: A0A7Y4U9Q7_9BACT (Vanadium-dependent haloperoxidase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4U9Q7_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 1.960e-11
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    4 SYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGSCLTYEGEINKLAVNVAFGR 207
            SY SGHA   GA  TVLKA        +   NPV P+ DG  L+ + G  LT  GE+NK+A+NVAFGR
Sbjct:   39 SYGSGHATVAGACVTVLKAFF---DENDIVKNPVVPNADGTALVPYVGEPLTVLGELNKVAINVAFGR 103          
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Match: D8LTP5_ECTSI (Vanadium-dependent bromoperoxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.200e-10
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNP-VFPSDDGLELIDF--------------EGSCLTYEGEINKLAVNVAFGR 207
            P+YPSGHAI  GA+ T LKA +G + G  C+    V  +D+G + I++              E   LTYEGE+NK+A NV  GR
Sbjct:  450 PAYPSGHAINLGAYITTLKAFLGFELGQRCYLGDLVVSNDEGTKRIEYVPRKGETCIDQNGREVQGLTYEGELNKVASNVIIGR 533          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1473.3286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
O82433_FUCDI1.440e-3895.65Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO1.100e-3586.96Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
B7ZGM6_9PHAE1.530e-2975.36Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
A0A3G3BM28_SACJA1.870e-2773.91Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
Q4LDE6_9PHAE1.190e-2669.86Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3L7JPY7_9BACI2.300e-1353.62Phosphoesterase n=1 Tax=Falsibacillus albus TaxID=... [more]
G4QEA8_GLANF1.100e-1250.72Phosphoesterase PA-phosphatase related protein n=1... [more]
Q7X9V0_9PHAE5.290e-1244.62Vanadium-dependent bromoperoxidase 2 n=2 Tax=Lamin... [more]
A0A7Y4U9Q7_9BACT1.960e-1150.00Vanadium-dependent haloperoxidase n=1 Tax=Acidobac... [more]
D8LTP5_ECTSI1.200e-1041.67Vanadium-dependent bromoperoxidase n=2 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1473contigF-serratus_M_contig1473:233524..234380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.2
Seed ortholog evalue5.5e-11
Seed eggNOG ortholog1254432.SCE1572_09075
KEGG rclassRC00002
KEGG koko:K09824,ko:K19302
KEGG ReactionR05627
KEGG Pathwayko00550,map00550
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphoesterase, PA-phosphatase related
EggNOG OGs1PMVX@1224,COG0671@1,COG0671@2
EC3.6.1.27
COG Functional cat.I
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.7368906-CDS-F-serratus_M_contig1473:233523..2336761622929449.7368906-CDS-F-serratus_M_contig1473:233523..233676Fucus serratus maleCDSF-serratus_M_contig1473 233524..233676 -
1690962858.2053015-CDS-F-serratus_M_contig1473:233523..2336761690962858.2053015-CDS-F-serratus_M_contig1473:233523..233676Fucus serratus maleCDSF-serratus_M_contig1473 233524..233676 -
1622929449.7569454-CDS-F-serratus_M_contig1473:234323..2343801622929449.7569454-CDS-F-serratus_M_contig1473:234323..234380Fucus serratus maleCDSF-serratus_M_contig1473 234324..234380 -
1690962858.2168705-CDS-F-serratus_M_contig1473:234323..2343801690962858.2168705-CDS-F-serratus_M_contig1473:234323..234380Fucus serratus maleCDSF-serratus_M_contig1473 234324..234380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1473.3286.1prot_F-serratus_M_contig1473.3286.1Fucus serratus malepolypeptideF-serratus_M_contig1473 233524..234380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1473.3286.1

>prot_F-serratus_M_contig1473.3286.1 ID=prot_F-serratus_M_contig1473.3286.1|Name=mRNA_F-serratus_M_contig1473.3286.1|organism=Fucus serratus male|type=polypeptide|length=70bp
PSYPSGHAIQNGAFATVLKALIGLDRGGECFPNPVFPSDDGLELIDFEGS
CLTYEGEINKLAVNVAFGR*
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mRNA from alignment at F-serratus_M_contig1473:233524..234380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1473.3286.1 ID=mRNA_F-serratus_M_contig1473.3286.1|Name=mRNA_F-serratus_M_contig1473.3286.1|organism=Fucus serratus male|type=mRNA|length=857bp|location=Sequence derived from alignment at F-serratus_M_contig1473:233524..234380- (Fucus serratus male)
CCTTCTTACCCGTCCGGCCACGCTATCCAAAACGGAGCATTTGCCACAGT TCTGAAGGTTAGCGTCGTTTGGTGGATGTACGGGATTTGGTGTTGTACTT TAACTTCGTTTTGTAGGCAGTTCCATTCTGCAGTACTATAGAGTGGAAAA GTAACATGTTAGACTAGCCAGCGCTGACCAATAGTCTACTGGGTCAATGT CCGAGCGCTGTAAGGATGAGACTTCGGTCTGTTTCTCAGGTTAAGACCGG ACGAGATTTTCATCGACCTCTGACGACGCTAGAGATATGTATAATATCAA TGACGAATAACTCTAGCGGCCTTTTGCATTCCGGTTCAAAAGGTTGTCCG ACATTTGACTGGGAAATAATGTGGAGGAATCAAAATGCGGCATAGAGAGT GGTGTTTTCAAGGGGTGTCAGTCTCCTCGGAGTGAAAATGCTGCATCCTT CGGGCTCCCTCGACCAGCACCTTTGTTTGAGTGGCGAGAATTTAAATAGG CCCATTCCCCGGAAAAATAGTACGTGTATTACAGACGTTTACCTTGCGCT ACTAGATTCGAACTGATGCCCTATATGTGGGGAAGTATATCGACGTTGTT CCTGAAAATCTTCTATGTCCTTGCGCCCTCGATATATACGCCCCCTTTCG CGCCCCGGCTCTATTTCGCTTTCACCACGATAAATCGTTATATATGTGAA CCAGGCCCTCATTGGCCTAGATCGGGGGGGTGAATGCTTTCCCAACCCCG TCTTCCCGAGCGATGACGGCCTCGAACTAATCGACTTCGAAGGGAGTTGC CTCACGTATGAGGGAGAAATCAACAAGCTCGCGGTCAACGTCGCATTCGG GAGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1473:233524..234380-

>mRNA_F-serratus_M_contig1473.3286.1 ID=mRNA_F-serratus_M_contig1473.3286.1|Name=mRNA_F-serratus_M_contig1473.3286.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig1473:233524..234380- (Fucus serratus male)
CCTTCTTACCCGTCCGGCCACGCTATCCAAAACGGAGCATTTGCCACAGT
TCTGAAGCCTTCTTACCCGTCCGGCCACGCTATCCAAAACGGAGCATTTG
CCACAGTTCTGAAGGCCCTCATTGGCCTAGATCGGGGGGGTGAATGCTTT
CCCAACCCCGTCTTCCCGAGCGATGACGGCCTCGAACTAATCGACTTCGA
AGGGAGTTGCCTCACGTATGAGGGAGAAATCAACAAGCTCGCGGTCAACG
TCGCATTCGGGAGGTGAGCCCTCATTGGCCTAGATCGGGGGGGTGAATGC
TTTCCCAACCCCGTCTTCCCGAGCGATGACGGCCTCGAACTAATCGACTT
CGAAGGGAGTTGCCTCACGTATGAGGGAGAAATCAACAAGCTCGCGGTCA
ACGTCGCATTCGGGAGGTGA
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