mRNA_F-serratus_M_contig1471.3279.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1471.3279.1
Unique NamemRNA_F-serratus_M_contig1471.3279.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.280e-33
Identity = 62/106 (58.49%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLARE 315
            GFELLRPHLDP D+WLYRLGCVVIFLSNFL LLIK D   +G+   LG +MV +N+ L++AV+ ++WF+TQQ VD+++D+EN  ++A  M+T ++++A+ ARLARE
Sbjct: 1472 GFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEGSRSVLGGIMVAINIFLILAVLFSTWFATQQSVDDSRDNENPVALAKTMLTFEQVAAKSARLARE 1577          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.350e-31
Identity = 61/105 (58.10%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLAR 312
            GFELLRPHLDP DAWLYRLGCV+IFLSNFL LLIKVD   +GN   LG +++ VNV L++AV+ TSWF+TQQ VD+ +++EN  ++A  M+T ++  A+ A++ R
Sbjct: 1421 GFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAALGGILIAVNVFLILAVLSTSWFATQQMVDDNRNEENSLALAKTMLTFEQRVADDAKVVR 1525          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 6.320e-31
Identity = 60/105 (57.14%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLAR 312
            GFELLRPHLDP D WLYRLGCV+IFLSNFL LLIKVD   +GN   LG +++ VNV L++AV+ TSWF+TQQ VD+ +++EN  ++A  M+T ++  A+ A++ R
Sbjct: 1079 GFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAALGGILIAVNVFLILAVLSTSWFATQQMVDDNRNEENSLALAKTMLTFEQRVADDAKVVR 1183          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.030e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLARE 315
            GFELLRPHLDP D+WLYRLGCV IFLSNFL LL KVD   + N   LG +++ VNV+LVVAV+ ++WF+TQQ VD+ ++ EN  ++A  M+T +++ A+  RL RE
Sbjct:  926 GFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESNRSILGGILIAVNVLLVVAVLASTWFATQQTVDDNREGENAFAVAKVMLTHEQVVAQSKRLERE 1031          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.500e-27
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSA 291
            GFELLRPHLDP D+WLYRLGCV IFLSNFL LL+KVD   + N   LG +++ VNV+LVVAV+ ++WF+TQQ VD+ ++ EN  ++A  M+T ++  A
Sbjct: 1383 GFELLRPHLDPADSWLYRLGCVTIFLSNFLALLMKVDAAGESNRSILGGILIAVNVLLVVAVLASTWFATQQTVDDNREGENAFAVAKAMLTHEQKGA 1480          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.250e-26
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDN-VKGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDE 225
            GFELLRPHLDP D+WLYRLGC+ IFLSNFL LLIKVD+ V GN +  GA+M+ +N+ L++AV+L SWFS QQ +DE
Sbjct: 1392 GFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVDSGVDGNHDVFGAIMIGINMFLIMAVLLASWFSMQQTMDE 1467          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.550e-24
Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDE 225
            GFELLRPHLDP D+WLYRLGC+ IFLSNFL LLIKVD+    N +  G +M+ +N++L++AV+L SWFS QQ +DE
Sbjct: 1382 GFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDSNRDVFGWIMIVINLLLIMAVLLASWFSMQQTMDE 1457          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: A0A6H5JZ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ37_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.290e-15
Identity = 48/127 (37.80%), Postives = 61/127 (48.03%), Query Frame = 1
Query:    4 FELLRPHLDPTDAWLYRL----------------------------------------------------GCVVIFLSNFLVLLIKVDN-VKGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDE 225
            FELL PHL+P D+WLYRL                                                    GC+ IFLSNFL LLIKVD+   GN + +GA+M+ +NV L++AV+L SWFS QQ +DE
Sbjct:  810 FELLGPHLEPVDSWLYRLVSCGNEGRLRNSTVAILGASKSQAFYTRSSDLFKRCPLLVLACFELVPTHLQGCLCIFLSNFLALLIKVDSRADGNHDVVGAIMIGINVFLIMAVLLASWFSMQQTMDE 936          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.890e-14
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVD---NVKGNGETLGALMVTVNVILVVAVILTSWFSTQQQ 216
            GFELLRPHL  TDAW+YR+GC+ IF SNFL L+ K D       + E  G L++ V+V++V+A++  ++ S QQ+
Sbjct: 1597 GFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQQK 1671          
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.100e-8
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNVKGNG---ETLGALMVTVNVILVVAVILTSW 198
             FELLRPH D  D  LYR GC+VIF +NFL L+IK +    +    E    +++ VNV+  +++   +W
Sbjct: 1584 AFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVASPDSRGSEVYSVVLIIVNVLFFLSIFWNTW 1652          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FRH0_ECTSI1.280e-3358.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JS31_9PHAE1.350e-3158.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH1_ECTSI6.320e-3157.14Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JCK8_9PHAE1.030e-2956.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI1.500e-2757.14Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH4_ECTSI6.250e-2667.11Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI3.550e-2463.16Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JZ37_9PHAE5.290e-1537.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTT7_ECTSI1.890e-1448.00Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G0B0_ECTSI3.100e-840.58Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1471contigF-serratus_M_contig1471:229583..230118 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.2018826-CDS-F-serratus_M_contig1471:229583..2298501622929449.2018826-CDS-F-serratus_M_contig1471:229583..229850Fucus serratus maleCDSF-serratus_M_contig1471 229584..229850 -
1690962857.9586697-CDS-F-serratus_M_contig1471:229583..2298501690962857.9586697-CDS-F-serratus_M_contig1471:229583..229850Fucus serratus maleCDSF-serratus_M_contig1471 229584..229850 -
1622929449.2165143-CDS-F-serratus_M_contig1471:230061..2301181622929449.2165143-CDS-F-serratus_M_contig1471:230061..230118Fucus serratus maleCDSF-serratus_M_contig1471 230062..230118 -
1690962857.9677076-CDS-F-serratus_M_contig1471:230061..2301181690962857.9677076-CDS-F-serratus_M_contig1471:230061..230118Fucus serratus maleCDSF-serratus_M_contig1471 230062..230118 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1471.3279.1prot_F-serratus_M_contig1471.3279.1Fucus serratus malepolypeptideF-serratus_M_contig1471 229584..230118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1471.3279.1

>prot_F-serratus_M_contig1471.3279.1 ID=prot_F-serratus_M_contig1471.3279.1|Name=mRNA_F-serratus_M_contig1471.3279.1|organism=Fucus serratus male|type=polypeptide|length=108bp
GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNVKGNGETLGALM
VTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHA
RLARETLV
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mRNA from alignment at F-serratus_M_contig1471:229583..230118-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1471.3279.1 ID=mRNA_F-serratus_M_contig1471.3279.1|Name=mRNA_F-serratus_M_contig1471.3279.1|organism=Fucus serratus male|type=mRNA|length=536bp|location=Sequence derived from alignment at F-serratus_M_contig1471:229583..230118- (Fucus serratus male)
GGCTTCGAACTGCTGCGACCCCACCTTGACCCCACGGACGCTTGGTTATA CCGTTTGGTGAGAAGACCTGGGCTGTTGTCTCTGTCGAGGCAGTCCAAAC TCTTTACGGGGCAGTGTGTCGGAAACTGTTCCAAACAGCCGGTGTTGTTA AAAATCAGATGCCCACCACAAAGTACAGGCGTCTCTGAGTGGAGCTACGT TTACGCGTCGTGCGCTTTCCACGATACTTGTCCTCGCTTGATCATGCTTC TCCCGTTTCGCGACGCAGGGCTGTGTGGTGATCTTTCTCAGCAATTTCCT CGTGCTGCTTATCAAGGTGGACAACGTAAAAGGAAATGGTGAGACCTTGG GCGCCCTTATGGTGACCGTGAATGTGATTCTCGTGGTCGCCGTGATCTTG ACGTCCTGGTTCTCCACCCAGCAGCAGGTGGACGAGGCAAAAGATGACGA GAACATTAACAGCATGGCCATGGATATGGTCACTACAGACCGCCTCTCTG CAGAGCACGCGCGACTCGCGCGTGAGACACTCGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1471:229583..230118-

>mRNA_F-serratus_M_contig1471.3279.1 ID=mRNA_F-serratus_M_contig1471.3279.1|Name=mRNA_F-serratus_M_contig1471.3279.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig1471:229583..230118- (Fucus serratus male)
GGCTTCGAACTGCTGCGACCCCACCTTGACCCCACGGACGCTTGGTTATA
CCGTTTGGGCTTCGAACTGCTGCGACCCCACCTTGACCCCACGGACGCTT
GGTTATACCGTTTGGGCTGTGTGGTGATCTTTCTCAGCAATTTCCTCGTG
CTGCTTATCAAGGTGGACAACGTAAAAGGAAATGGTGAGACCTTGGGCGC
CCTTATGGTGACCGTGAATGTGATTCTCGTGGTCGCCGTGATCTTGACGT
CCTGGTTCTCCACCCAGCAGCAGGTGGACGAGGCAAAAGATGACGAGAAC
ATTAACAGCATGGCCATGGATATGGTCACTACAGACCGCCTCTCTGCAGA
GCACGCGCGACTCGCGCGTGAGACACTCGTAGGCTGTGTGGTGATCTTTC
TCAGCAATTTCCTCGTGCTGCTTATCAAGGTGGACAACGTAAAAGGAAAT
GGTGAGACCTTGGGCGCCCTTATGGTGACCGTGAATGTGATTCTCGTGGT
CGCCGTGATCTTGACGTCCTGGTTCTCCACCCAGCAGCAGGTGGACGAGG
CAAAAGATGACGAGAACATTAACAGCATGGCCATGGATATGGTCACTACA
GACCGCCTCTCTGCAGAGCACGCGCGACTCGCGCGTGAGACACTCGTA
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