mRNA_F-serratus_M_contig1471.3279.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.280e-33 Identity = 62/106 (58.49%), Postives = 86/106 (81.13%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLARE 315
GFELLRPHLDP D+WLYRLGCVVIFLSNFL LLIK D +G+ LG +MV +N+ L++AV+ ++WF+TQQ VD+++D+EN ++A M+T ++++A+ ARLARE
Sbjct: 1472 GFELLRPHLDPADSWLYRLGCVVIFLSNFLALLIKADTAGEGSRSVLGGIMVAINIFLILAVLFSTWFATQQSVDDSRDNENPVALAKTMLTFEQVAAKSARLARE 1577
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.350e-31 Identity = 61/105 (58.10%), Postives = 82/105 (78.10%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLAR 312
GFELLRPHLDP DAWLYRLGCV+IFLSNFL LLIKVD +GN LG +++ VNV L++AV+ TSWF+TQQ VD+ +++EN ++A M+T ++ A+ A++ R
Sbjct: 1421 GFELLRPHLDPADAWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAALGGILIAVNVFLILAVLSTSWFATQQMVDDNRNEENSLALAKTMLTFEQRVADDAKVVR 1525
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI) HSP 1 Score: 124 bits (312), Expect = 6.320e-31 Identity = 60/105 (57.14%), Postives = 81/105 (77.14%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLAR 312
GFELLRPHLDP D WLYRLGCV+IFLSNFL LLIKVD +GN LG +++ VNV L++AV+ TSWF+TQQ VD+ +++EN ++A M+T ++ A+ A++ R
Sbjct: 1079 GFELLRPHLDPADMWLYRLGCVIIFLSNFLALLIKVDAAGEGNRAALGGILIAVNVFLILAVLSTSWFATQQMVDDNRNEENSLALAKTMLTFEQRVADDAKVVR 1183
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.030e-29 Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSAEHARLARE 315
GFELLRPHLDP D+WLYRLGCV IFLSNFL LL KVD + N LG +++ VNV+LVVAV+ ++WF+TQQ VD+ ++ EN ++A M+T +++ A+ RL RE
Sbjct: 926 GFELLRPHLDPADSWLYRLGCVTIFLSNFLALLTKVDAAGESNRSILGGILIAVNVLLVVAVLASTWFATQQTVDDNREGENAFAVAKVMLTHEQVVAQSKRLERE 1031
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.500e-27 Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDEAKDDENINSMAMDMVTTDRLSA 291
GFELLRPHLDP D+WLYRLGCV IFLSNFL LL+KVD + N LG +++ VNV+LVVAV+ ++WF+TQQ VD+ ++ EN ++A M+T ++ A
Sbjct: 1383 GFELLRPHLDPADSWLYRLGCVTIFLSNFLALLMKVDAAGESNRSILGGILIAVNVLLVVAVLASTWFATQQTVDDNREGENAFAVAKAMLTHEQKGA 1480
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI) HSP 1 Score: 110 bits (275), Expect = 6.250e-26 Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDN-VKGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDE 225
GFELLRPHLDP D+WLYRLGC+ IFLSNFL LLIKVD+ V GN + GA+M+ +N+ L++AV+L SWFS QQ +DE
Sbjct: 1392 GFELLRPHLDPVDSWLYRLGCLCIFLSNFLALLIKVDSGVDGNHDVFGAIMIGINMFLIMAVLLASWFSMQQTMDE 1467
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI) HSP 1 Score: 105 bits (262), Expect = 3.550e-24 Identity = 48/76 (63.16%), Postives = 61/76 (80.26%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNV-KGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDE 225
GFELLRPHLDP D+WLYRLGC+ IFLSNFL LLIKVD+ N + G +M+ +N++L++AV+L SWFS QQ +DE
Sbjct: 1382 GFELLRPHLDPVDSWLYRLGCMCIFLSNFLALLIKVDSAGDSNRDVFGWIMIVINLLLIMAVLLASWFSMQQTMDE 1457
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: A0A6H5JZ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ37_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 5.290e-15 Identity = 48/127 (37.80%), Postives = 61/127 (48.03%), Query Frame = 1
Query: 4 FELLRPHLDPTDAWLYRL----------------------------------------------------GCVVIFLSNFLVLLIKVDN-VKGNGETLGALMVTVNVILVVAVILTSWFSTQQQVDE 225
FELL PHL+P D+WLYRL GC+ IFLSNFL LLIKVD+ GN + +GA+M+ +NV L++AV+L SWFS QQ +DE
Sbjct: 810 FELLGPHLEPVDSWLYRLVSCGNEGRLRNSTVAILGASKSQAFYTRSSDLFKRCPLLVLACFELVPTHLQGCLCIFLSNFLALLIKVDSRADGNHDVVGAIMIGINVFLIMAVLLASWFSMQQTMDE 936
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 1.890e-14 Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVD---NVKGNGETLGALMVTVNVILVVAVILTSWFSTQQQ 216
GFELLRPHL TDAW+YR+GC+ IF SNFL L+ K D + E G L++ V+V++V+A++ ++ S QQ+
Sbjct: 1597 GFELLRPHLSHTDAWMYRIGCITIFFSNFLGLMAKADVSDEEAQSQEAYGLLLIAVHVLMVLAILAQAYVSMQQK 1671
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 3.100e-8 Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 1 GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNVKGNG---ETLGALMVTVNVILVVAVILTSW 198
FELLRPH D D LYR GC+VIF +NFL L+IK + + E +++ VNV+ +++ +W
Sbjct: 1584 AFELLRPHTDHLDMQLYRTGCLVIFFTNFLALMIKANVASPDSRGSEVYSVVLIIVNVLFFLSIFWNTW 1652 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1471.3279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1471.3279.1 >prot_F-serratus_M_contig1471.3279.1 ID=prot_F-serratus_M_contig1471.3279.1|Name=mRNA_F-serratus_M_contig1471.3279.1|organism=Fucus serratus male|type=polypeptide|length=108bp GFELLRPHLDPTDAWLYRLGCVVIFLSNFLVLLIKVDNVKGNGETLGALMback to top mRNA from alignment at F-serratus_M_contig1471:229583..230118- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1471.3279.1 ID=mRNA_F-serratus_M_contig1471.3279.1|Name=mRNA_F-serratus_M_contig1471.3279.1|organism=Fucus serratus male|type=mRNA|length=536bp|location=Sequence derived from alignment at F-serratus_M_contig1471:229583..230118- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1471:229583..230118- >mRNA_F-serratus_M_contig1471.3279.1 ID=mRNA_F-serratus_M_contig1471.3279.1|Name=mRNA_F-serratus_M_contig1471.3279.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig1471:229583..230118- (Fucus serratus male)back to top |