mRNA_F-serratus_M_contig1471.3280.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1471.3280.1
Unique NamemRNA_F-serratus_M_contig1471.3280.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 8.590e-18
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:   29 EEELEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            EEEL+  +  RR NP+LVPSMFLWKDFGPD+YYYEVIECGRRILLTG
Sbjct: 1400 EEELQDRLEKRRQNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTG 1446
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 2.190e-17
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:   32 EELEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            E+LE+ +  RR NP+LVPSMFLWKDFGPD+YYYEV+ECGRRILLTG
Sbjct: 1311 EDLEEKLEKRRRNPDLVPSMFLWKDFGPDMYYYEVVECGRRILLTG 1356
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.990e-17
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:   32 EELEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            ++LE+ +  RR NP+LVPSMFLWKDFGPD+YYYEVIECGRRILLTG
Sbjct: 1350 DDLEERLEQRRNNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTG 1395
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.540e-17
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 2 
Query:   32 EELEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            EELE+ +  RR NP+LVPSMFLWKDF PD+YYYEVIECGRRILLTG
Sbjct:  855 EELEERLQKRRQNPDLVPSMFLWKDFDPDMYYYEVIECGRRILLTG 900
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.040e-16
Identity = 34/46 (73.91%), Postives = 42/46 (91.30%), Query Frame = 2 
Query:   32 EELEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            E+LE+ +  RR NP+L+PSMFLWKDFGP++YYYEV+ECGRRILLTG
Sbjct: 1321 EDLEEKLEKRRRNPDLIPSMFLWKDFGPEIYYYEVVECGRRILLTG 1366
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.410e-16
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 2 
Query:   38 LEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            L++ ++ RR NP+LVPSMFLWKDFGPD+YYYEVIECGRRILLTG
Sbjct: 1010 LQERLDQRRRNPDLVPSMFLWKDFGPDMYYYEVIECGRRILLTG 1053
[Close]
BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: A0A6H5JZ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ37_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.620e-8
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 2 
Query:   20 PLQEEELEKMVNLRRTNPELVPSMFLWKDF------GPDLYYYEVIECGRRILLTG 169
            P   E+LE+ +  RR NP+L+PS+     F       P++YYYEV+ECGRRILLTG
Sbjct:  728 PKYSEDLEEKLEKRRRNPDLIPSITFPPQFLPMFAPDPEIYYYEVVECGRRILLTG 783
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.860e-7
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:   50 VNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            +N RRT+  + P+ FLW  + P  YYYEVIEC RR+LLTG
Sbjct:  458 MNQRRTDRAIAPTSFLWNAYYPSRYYYEVIECFRRLLLTG 497
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BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 9.880e-6
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 2 
Query:   38 LEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            LEK  + R   P +     LW+ + P +YYYEVIECGRRILLTG
Sbjct:  854 LEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTG 897
[Close]
BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 1.010e-5
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 2 
Query:   38 LEKMVNLRRTNPELVPSMFLWKDFGPDLYYYEVIECGRRILLTG 169
            LEK  + R   P +     LW+ + P +YYYEVIECGRRILLTG
Sbjct: 2592 LEKDPDGREDPPRVASISNLWQPYRPSVYYYEVIECGRRILLTG 2635
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1471.3280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FRH0_ECTSI8.590e-1880.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRH3_ECTSI2.190e-1778.26Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JS31_9PHAE2.990e-1778.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK8_9PHAE5.540e-1780.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH4_ECTSI1.040e-1673.91Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH1_ECTSI1.410e-1679.55Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JZ37_9PHAE6.620e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI42_9PHAE5.860e-757.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH1_ECTSI9.880e-654.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI1.010e-554.55LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1471contigF-serratus_M_contig1471:230122..230622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size241
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929449.138159-CDS-F-serratus_M_contig1471:230121..2302511622929449.138159-CDS-F-serratus_M_contig1471:230121..230251Fucus serratus maleCDSF-serratus_M_contig1471 230122..230251 -
1690962857.9412408-CDS-F-serratus_M_contig1471:230121..2302511690962857.9412408-CDS-F-serratus_M_contig1471:230121..230251Fucus serratus maleCDSF-serratus_M_contig1471 230122..230251 -
1622929449.1513317-CDS-F-serratus_M_contig1471:230512..2306221622929449.1513317-CDS-F-serratus_M_contig1471:230512..230622Fucus serratus maleCDSF-serratus_M_contig1471 230513..230622 -
1690962857.9501665-CDS-F-serratus_M_contig1471:230512..2306221690962857.9501665-CDS-F-serratus_M_contig1471:230512..230622Fucus serratus maleCDSF-serratus_M_contig1471 230513..230622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1471.3280.1prot_F-serratus_M_contig1471.3280.1Fucus serratus malepolypeptideF-serratus_M_contig1471 230122..230622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1471.3280.1

>prot_F-serratus_M_contig1471.3280.1 ID=prot_F-serratus_M_contig1471.3280.1|Name=mRNA_F-serratus_M_contig1471.3280.1|organism=Fucus serratus male|type=polypeptide|length=80bp
EKEAHVAPTGGGAGEDGEPPENQSRASTVYVPLEGLRPRLILLRGDRVRP
AHSTHGVLIFIDPYTASQAAAACIFAFGSL
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mRNA from alignment at F-serratus_M_contig1471:230122..230622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1471.3280.1 ID=mRNA_F-serratus_M_contig1471.3280.1|Name=mRNA_F-serratus_M_contig1471.3280.1|organism=Fucus serratus male|type=mRNA|length=501bp|location=Sequence derived from alignment at F-serratus_M_contig1471:230122..230622- (Fucus serratus male)
GAGAAGGAAGCACATGTCGCCCCTACAGGAGGAGGAGCTGGAGAAGATGG
TGAACCTCCGGAGAACCAATCCCGAGCTAGTACCGTCTATGTTCCTCTGG
AAGGACTTCGGTGAGAAATTATTTTTGTTTATTTTATAGGACCGCGCGAG
AGCTTTTATTATCTATCAGGTATCGTAGAATCGGATTGGAATGTTTGCTG
CATACGCTGTTCCCTTACGCCCCCAGTGAGTGACGACCACCGCTGCCGTA
AGCCTTGGCTTGTTGCGGACGGCAAGACGCCTTTGCGAATGGTCCATACA
GTCAGTAGCTGTCGTGATACCTACTGGTCTTTCTCCCACTCCCTCTCTCC
GTGGGCCGGTCGCTACCACAGGCCCCGACTTATACTACTACGAGGTGATC
GAGTGCGGCCGGCGCATTCTACTCACGGGGTGTTGATCTTCATCGACCCG
TACACAGCGTCGCAGGCTGCCGCAGCGTGCATCTTCGCTTTCGGAAGCCT
C
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Coding sequence (CDS) from alignment at F-serratus_M_contig1471:230122..230622-

>mRNA_F-serratus_M_contig1471.3280.1 ID=mRNA_F-serratus_M_contig1471.3280.1|Name=mRNA_F-serratus_M_contig1471.3280.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig1471:230122..230622- (Fucus serratus male)
GAGAAGGAAGCACATGTCGCCCCTACAGGAGGAGGAGCTGGAGAAGATGG
TGAACCTCCGGAGAACCAATCCCGAGCTAGTACCGTCTATGTTCCTCTGG
AAGGACTTCGGAGAAGGAAGCACATGTCGCCCCTACAGGAGGAGGAGCTG
GAGAAGATGGTGAACCTCCGGAGAACCAATCCCGAGCTAGTACCGTCTAT
GTTCCTCTGGAAGGACTTCGGCCCCGACTTATACTACTACGAGGTGATCG
AGTGCGGCCGGCGCATTCTACTCACGGGGTGTTGATCTTCATCGACCCGT
ACACAGCGTCGCAGGCTGCCGCAGCGTGCATCTTCGCTTTCGGAAGCCTC
GCCCCGACTTATACTACTACGAGGTGATCGAGTGCGGCCGGCGCATTCTA
CTCACGGGGTGTTGATCTTCATCGACCCGTACACAGCGTCGCAGGCTGCC
GCAGCGTGCATCTTCGCTTTCGGAAGCCTC
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