mRNA_F-serratus_M_contig1463.3258.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1463.3258.1
Unique NamemRNA_F-serratus_M_contig1463.3258.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1463.3258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1463contigF-serratus_M_contig1463:30850..34037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size904
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1463.3258.1prot_F-serratus_M_contig1463.3258.1Fucus serratus malepolypeptideF-serratus_M_contig1463 31093..34037 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929446.2857194-UTR-F-serratus_M_contig1463:30849..310921622929446.2857194-UTR-F-serratus_M_contig1463:30849..31092Fucus serratus maleUTRF-serratus_M_contig1463 30850..31092 -
1690962856.3523405-UTR-F-serratus_M_contig1463:30849..310921690962856.3523405-UTR-F-serratus_M_contig1463:30849..31092Fucus serratus maleUTRF-serratus_M_contig1463 30850..31092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929446.3040237-CDS-F-serratus_M_contig1463:31092..313721622929446.3040237-CDS-F-serratus_M_contig1463:31092..31372Fucus serratus maleCDSF-serratus_M_contig1463 31093..31372 -
1690962856.3634176-CDS-F-serratus_M_contig1463:31092..313721690962856.3634176-CDS-F-serratus_M_contig1463:31092..31372Fucus serratus maleCDSF-serratus_M_contig1463 31093..31372 -
1622929446.3211107-CDS-F-serratus_M_contig1463:31855..321561622929446.3211107-CDS-F-serratus_M_contig1463:31855..32156Fucus serratus maleCDSF-serratus_M_contig1463 31856..32156 -
1690962856.380384-CDS-F-serratus_M_contig1463:31855..321561690962856.380384-CDS-F-serratus_M_contig1463:31855..32156Fucus serratus maleCDSF-serratus_M_contig1463 31856..32156 -
1622929446.3338196-CDS-F-serratus_M_contig1463:33958..340371622929446.3338196-CDS-F-serratus_M_contig1463:33958..34037Fucus serratus maleCDSF-serratus_M_contig1463 33959..34037 -
1690962856.4008007-CDS-F-serratus_M_contig1463:33958..340371690962856.4008007-CDS-F-serratus_M_contig1463:33958..34037Fucus serratus maleCDSF-serratus_M_contig1463 33959..34037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1463.3258.1

>prot_F-serratus_M_contig1463.3258.1 ID=prot_F-serratus_M_contig1463.3258.1|Name=mRNA_F-serratus_M_contig1463.3258.1|organism=Fucus serratus male|type=polypeptide|length=220bp
ATTSSGLGSTETTSTGPLVTWECSDEEPLTLSSSPVNFVSQQYSDDDCAD
PIDNTEIVYSGLDGSCISSITNGYGSFLFGCREDGAFITQQFASDDDTCT
GDVWAQHAYHYDNFDCVLNEIGGSYYRPLSCTTESATIVGSATPFTPAPI
AAQFATPPSPEVDGDSMPIAIYLSPAPTAAQVMTPEVGGDAMPIATTYSP
TPTAAEVTTPRPSKLTTVR*
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mRNA from alignment at F-serratus_M_contig1463:30850..34037-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1463.3258.1 ID=mRNA_F-serratus_M_contig1463.3258.1|Name=mRNA_F-serratus_M_contig1463.3258.1|organism=Fucus serratus male|type=mRNA|length=3188bp|location=Sequence derived from alignment at F-serratus_M_contig1463:30850..34037- (Fucus serratus male)
GCAACAACTAGCTCGGGGCTGGGATCAACTGAAACAACGAGCACTGGCCC
ATTGGTGACGTGGGAATGCTCAGACGAAGGTGACGTGACTACCAGATCGC
ATATTATGGTACCTTGCCTGTTACCCTAACAGATCAGTCCGTACTTCCCG
AAATTGCGCCTATGACGCATTTTTATCGCGATACAGGTTCAGCAGTTTTG
AGAACCGTCCAAATAGCGATCAAGCATTAGCTATTACTCTCGATCATGAT
GTTTTCCGCTGCCACAGTCATCTTTCCGGGGCTCAACCTCGGGATCACCG
TACAAACAATCGTTCTGACATCCGCTCGCCGCGCGTTCCCTGGAATGATG
TGAACGCGTTGTTGACGAAATGATGTTTTTGCCGATATAAAATTTCAGCT
TTATTAGCGCAGAAATACAAAGATACTCCAATGCCAAGTATAACAGAGGA
TATGATCTATCAGATTGCAAAGACGCGCTACTATTACCCGGAGTAGCCCG
AAGAGAATCAAACACTCCGTTCAACAACAAGAGGTAGCCAGTGCTGCTGT
CGATGAGGATATTATGTTGGTCAGAATATGAAGCGCACAGGAAAATTTGC
GAGATAGAGTGTACAGTCTCCAGTATCAAAGTCCTAATCCATCACGCTAC
CTGGCCCCACCGGATACCGACTGCTGTTAATGCCATGTGTTTCCTATCTC
GATGTCCTCCAACTTCTACTTGTGGGCCTTATGCCGCAACCATGTAGTAA
TCGTTATAGTAATGTTAACAGTATCGCCCGTTACCGGTGAACTCTTGAAA
ATACGGTTGCCTGTAAGTTACTGACATCACGTGCGCAGCGGGCGTTCTTT
GGCGATATCATCGGTGGTAACGGTGCCTTTCATCTCCGCCCACCCACCGT
TCTGACCGCGATCTGGTTAGCGGGGCTCTCGTCGCTCTTGTCATGGCGCT
CTACAAGGTTTTTCCAACACTATGGTATGTTTAAAGCTAAACTCGGCGAA
TTAAAAAGACCTAGGCGAGCGGTGCACTGGCTATTAGCGGCCCAAACATA
GTGGCCACGGCTGTGGTGGAGCCGTAAATAGTGCTGCAAAGGCTTGAGGT
GCGCTGGGGTCTAGGGATCTATAAAGTTACCATCGACAGCCATACGCTGG
CATTAGACGCGGGGGTTTAGGCGCGGTGGGGCTCGGCGCTGCTGTCTTAA
TACCCATGCCAAGGCCGTGATCCGCAGGCAAGTAAGCGCCGCCTTCGACG
GTGTGCCGTAAGGCTTTCAAGGGCCCCAACAAGTGGTGGAAGTCTGCGTT
CGATGTCAAACTATTTTTGCCCTTCACTCTCGGGAACGCGCCCACGTAAA
GCACGCATCAACTGGGGGACTATTGTATTAAATAAAGCTTTGCCTTGGAA
CCTTCGGCCGCTGTAGATGAATTGCGGAGCCATGACCGCTTGTCGCAGGT
CGAACGTGTAGGCTTGTAGAGATTCAATAGCCCCCTGGCCTTACATGATG
AAATACAACACCCAGAACACGCCGAGGATCTATCTTAATTTACGTCCAAG
ATATCATAGCTTCCGATAGTTGCATCCAGGACCACTGCGAAGTAGGCGGT
GCCCTGGTCAGTATTGGTAATAACTTACGCGTGTTTTGCCTTCAGAGCAA
TGACAACTCCATCAACAGACCAGGGTGGCCAGAACGGATTCGGGGCACTG
CATGGATGGGTAGAATAGACTTGTGCTCAAGCTCTGCCAACTCCTGCTTG
ATTTTTTCCCGTCCGCTGCCTTGGGTTTTATAACCTTTCCGACAATTGAC
AAGGTGAATGAACGCATTTCTCCTCCCTCCCCCCACCATTCCCCGCGCTT
TCTCTCCGCGTTCTATGTCAACAATGCGTAGAACCATTAACGCTTTCTTC
TAGCCCAGTCAACTTTGTGTCGCAACAATACAGCGATGACGATTGCGCCG
ACCCCATCGATAACACGGAAATAGTATACTCTGGGCTCGATGGTTCTTGC
ATTTCGAGCATCACCAACGGATACGGTTCGTTCCTCTTCGGATGCCGGGA
AGATGGCGCGTTCATTACACAGCAATTTGCGTCGGATGACGACACATGTA
CTGGCGATGTCTGGGCTCAGCACGCGTACCACTATGACAACTTTGATTGT
GTCCTCAACGAGATCGGGGGCTCCTACTACAGGTACGATTGCGAGCCGTA
ACTAGCTCGATCGCCCCCAGAAGGAGGGAAGAGTAAAATTTTTTATAAGC
AAGGCAATCGGCTAACTGATAAACCCGAACGATAAGTCATATTGCCTCAC
AACCGCAACCTTGTCGACTCGAAGTCTCCTAGGCCGATTGTCTTTGTTCG
TACTTACCGTACAATGGTTGCTGGACGACGCAGCCTGGGAGGGTAGCTTC
TGTGACTTCTGCAGAAACCCCTTTCATTTATATCTTCAAATTAGTATATC
CGCTAAGAAATAAATGAAGCGCGAGGTAGATTCTCCCTTGTGCACCGCCA
TCGCTGCGCAAAAAAAAAAAAATGCTCGAAACCACTCGTGAGGTACATAT
TCCCAATAAACTCACCAGACACGGTAACTGCCGTAATTTCGTCACACTGA
AGGCAATCTAACAGCAAAACGTTTTGATTTCCCCATGACCTCATCCGCTG
CCTGCGAACATACAGGCCTCTATCTTGTACGACGGAAAGTGCGACCATAG
TTGGCTCCGCCACTCCTTTCACCCCGGCTCCGATCGCCGCTCAATTCGCC
ACTCCACCGTCCCCCGAAGTTGACGGTGATTCGATGCCTATCGCCATCTA
CTTATCTCCTGCCCCGACCGCCGCTCAAGTCATGACCCCCGAAGTAGGCG
GTGATGCCATGCCCATCGCCACCACCTACTCTCCAACTCCGACCGCCGCT
GAAGTCACCACTCCCCGACCTTCGAAGTTAACGACGGTTCGATGACTATC
GCCACCACCTACTTTCCTGCTTCGACATCCGTCGACTCCACCACTCCACG
GAACGCCGACGTGGACGACGATTCGATGCCTGTCACCACCCCTGACTCGC
CTGCTCCTACTGCGACCGAAGTTATCGTTCCCCTCAGTACCGAAGCCCCA
ACCACAACGGACGCAGTGAAAGCCACTAGCGGGGCAGCCCCAACGAGCTT
TACGGTACGGCAGTTGGGGTTGTGGCTGCCACCTGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1463:30850..34037-

>mRNA_F-serratus_M_contig1463.3258.1 ID=mRNA_F-serratus_M_contig1463.3258.1|Name=mRNA_F-serratus_M_contig1463.3258.1|organism=Fucus serratus male|type=CDS|length=1320bp|location=Sequence derived from alignment at F-serratus_M_contig1463:30850..34037- (Fucus serratus male)
GCAACAACTAGCTCGGGGCTGGGATCAACTGAAACAACGAGCACTGGCCC
ATTGGTGACGTGGGAATGCTCAGACGAAGGCAACAACTAGCTCGGGGCTG
GGATCAACTGAAACAACGAGCACTGGCCCATTGGTGACGTGGGAATGCTC
AGACGAAGAACCATTAACGCTTTCTTCTAGCCCAGTCAACTTTGTGTCGC
AACAATACAGCGATGACGATTGCGCCGACCCCATCGATAACACGGAAATA
GTATACTCTGGGCTCGATGGTTCTTGCATTTCGAGCATCACCAACGGATA
CGGTTCGTTCCTCTTCGGATGCCGGGAAGATGGCGCGTTCATTACACAGC
AATTTGCGTCGGATGACGACACATGTACTGGCGATGTCTGGGCTCAGCAC
GCGTACCACTATGACAACTTTGATTGTGTCCTCAACGAGATCGGGGGCTC
CTACTACAGAACCATTAACGCTTTCTTCTAGCCCAGTCAACTTTGTGTCG
CAACAATACAGCGATGACGATTGCGCCGACCCCATCGATAACACGGAAAT
AGTATACTCTGGGCTCGATGGTTCTTGCATTTCGAGCATCACCAACGGAT
ACGGTTCGTTCCTCTTCGGATGCCGGGAAGATGGCGCGTTCATTACACAG
CAATTTGCGTCGGATGACGACACATGTACTGGCGATGTCTGGGCTCAGCA
CGCGTACCACTATGACAACTTTGATTGTGTCCTCAACGAGATCGGGGGCT
CCTACTACAGGCCTCTATCTTGTACGACGGAAAGTGCGACCATAGTTGGC
TCCGCCACTCCTTTCACCCCGGCTCCGATCGCCGCTCAATTCGCCACTCC
ACCGTCCCCCGAAGTTGACGGTGATTCGATGCCTATCGCCATCTACTTAT
CTCCTGCCCCGACCGCCGCTCAAGTCATGACCCCCGAAGTAGGCGGTGAT
GCCATGCCCATCGCCACCACCTACTCTCCAACTCCGACCGCCGCTGAAGT
CACCACTCCCCGACCTTCGAAGTTAACGACGGTTCGATGAGCCTCTATCT
TGTACGACGGAAAGTGCGACCATAGTTGGCTCCGCCACTCCTTTCACCCC
GGCTCCGATCGCCGCTCAATTCGCCACTCCACCGTCCCCCGAAGTTGACG
GTGATTCGATGCCTATCGCCATCTACTTATCTCCTGCCCCGACCGCCGCT
CAAGTCATGACCCCCGAAGTAGGCGGTGATGCCATGCCCATCGCCACCAC
CTACTCTCCAACTCCGACCGCCGCTGAAGTCACCACTCCCCGACCTTCGA
AGTTAACGACGGTTCGATGA
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