mRNA_F-serratus_M_contig1463.3257.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1463.3257.1
Unique Name	mRNA_F-serratus_M_contig1463.3257.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1463.3257.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.600e-16
Identity = 53/89 (59.55%), Postives = 69/89 (77.53%), Query Frame = 3

Query:  225 QTKPTQAPGKQSPGDSKARQHG-LRASNGQEKG-----MGSGMLVKRSGKVPRLEMVSFKKLSKGTLVLGVVFKVDEDDMVVSLTSSLT 473
            Q++P+ APGK+  G+S A   G + AS G+++G     +GSGMLV+ SG+ PRLEMVSFKKL+KGTL +GVVFK++E DMVVSL SSLT
Sbjct:   75 QSRPS-APGKRPRGESSASSPGGIGASKGKKRGSTASEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLAMGVVFKINEHDMVVSLPSSLT 162

[Close]

BLAST of mRNA_F-serratus_M_contig1463.3257.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.920e-10
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 3

Query:  225 QTKPTQAPGKQSPGDSKARQHG-LRASNGQEKG-----MGSGMLVKRSGKVPRLEMVSFKKLSKGTLVLGVVFKV 431
            Q++P+  PGK+  G+S A   G + AS G+++G     +GSGMLV+ SG+ PRLEMVSFKKL+KGTL +GVVFKV
Sbjct:   73 QSRPS-VPGKRPRGESSASSPGSIGASKGKKRGSAGSEVGSGMLVEHSGRAPRLEMVSFKKLNKGTLAMGVVFKV 146

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1463.3257.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1463.3257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FRR9_ECTSI	1.600e-16	59.55	rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si...	[more]
A0A6H5LPP1_9PHAE	5.920e-10	56.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1463	contig	F-serratus_M_contig1463:9903..12634 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	89.0
Seed ortholog evalue	2.1e-15
Seed eggNOG ortholog	2880.D7FRR9
Preferred name	RRP5
KEGG ko	ko:K14792,ko:K20353
Hectar predicted targeting category	other localisation
GOs	GO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGs	COG0539@1,KOG1070@2759
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03009,ko04131
Exons	3
Model size	474
Cds size	444
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1463.3257.1	prot_F-serratus_M_contig1463.3257.1	Fucus serratus male	polypeptide	F-serratus_M_contig1463 9903..12605 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929446.196276-CDS-F-serratus_M_contig1463:9902..9947	1622929446.196276-CDS-F-serratus_M_contig1463:9902..9947	Fucus serratus male	CDS	F-serratus_M_contig1463 9903..9947 -
1690962856.3045797-CDS-F-serratus_M_contig1463:9902..9947	1690962856.3045797-CDS-F-serratus_M_contig1463:9902..9947	Fucus serratus male	CDS	F-serratus_M_contig1463 9903..9947 -
1622929446.2114859-CDS-F-serratus_M_contig1463:10275..10386	1622929446.2114859-CDS-F-serratus_M_contig1463:10275..10386	Fucus serratus male	CDS	F-serratus_M_contig1463 10276..10386 -
1690962856.3149812-CDS-F-serratus_M_contig1463:10275..10386	1690962856.3149812-CDS-F-serratus_M_contig1463:10275..10386	Fucus serratus male	CDS	F-serratus_M_contig1463 10276..10386 -
1622929446.2226722-CDS-F-serratus_M_contig1463:12317..12605	1622929446.2226722-CDS-F-serratus_M_contig1463:12317..12605	Fucus serratus male	CDS	F-serratus_M_contig1463 12318..12605 -
1690962856.323171-CDS-F-serratus_M_contig1463:12317..12605	1690962856.323171-CDS-F-serratus_M_contig1463:12317..12605	Fucus serratus male	CDS	F-serratus_M_contig1463 12318..12605 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929446.2350268-UTR-F-serratus_M_contig1463:12605..12634	1622929446.2350268-UTR-F-serratus_M_contig1463:12605..12634	Fucus serratus male	UTR	F-serratus_M_contig1463 12606..12634 -
1690962856.3382401-UTR-F-serratus_M_contig1463:12605..12634	1690962856.3382401-UTR-F-serratus_M_contig1463:12605..12634	Fucus serratus male	UTR	F-serratus_M_contig1463 12606..12634 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1463:9903..12634-
coding sequence from alignment at F-serratus_M_contig1463:9903..12634-

protein sequence of mRNA_F-serratus_M_contig1463.3257.1

>prot_F-serratus_M_contig1463.3257.1 ID=prot_F-serratus_M_contig1463.3257.1|Name=mRNA_F-serratus_M_contig1463.3257.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MTELDLFPRGKTPTDKSLSSSNQRKPRDDTRASSNDVKKDRKRKAVGSPP
PKAGEQDRDFLFGAPQTKPTQAPGKQSPGDSKARQHGLRASNGQEKGMGS
GMLVKRSGKVPRLEMVSFKKLSKGTLVLGVVFKVDEDDMVVSLTSSLT

mRNA from alignment at F-serratus_M_contig1463:9903..12634-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1463.3257.1 ID=mRNA_F-serratus_M_contig1463.3257.1|Name=mRNA_F-serratus_M_contig1463.3257.1|organism=Fucus serratus male|type=mRNA|length=2732bp|location=Sequence derived from alignment at F-serratus_M_contig1463:9903..12634- (Fucus serratus male)
AGCCTGCATGAGCTCACACTGTAGTTGACATGACGGAGCTCGATCTGTTC
CCGAGAGGGAAGACTCCGACGGATAAGTCTCTTAGCTCTTCGAACCAGAG
GAAACCGAGGGATGATACCAGGGCCTCCAGTAATGATGTCAAGAAGGACC
GCAAACGGAAGGCTGTCGGCTCACCACCTCCGAAGGCCGGAGAACAGGAT
AGAGACTTCCTCTTTGGGGCGCCCCAAACAAAGCCGACTCAAGCGCCCGG
GAAGCAGTCTCCCGGGGATAGCAAAGCTCGGCAACATGGTTTACGCGCAA
GCAATGGGCAAGAAAAGGTGGGTAAGTTAGAATGGTGTCACGATACCTCT
GCAAGTACTCTTGCTTTAAAGCGAGTTGTCGTCATTTATCATTTGAACTT
TGTTGAAATTGCCTTTCGTAAAGGAGGTTAAAGGGAGAACCAAGGAGGGC
CACTCAAGAACCTCAACGGCGTGCCTGTGAAGTTACGGTCTTCCCTGTCC
TCTACCTTACCGTAACGCTGGTGATACCTCAAACCTAAGCCATCAAGCTT
TTACTAAACCAAACGAGTAGCTCGCTCGGTCAACGATAGTGTCCGTTAGT
CCGATTTCCTCTGATTCAACATGCACCAGGGCAAGCTATATTTTATACTA
CAAACAGTAGTACTTCCTTTCATGTATGTACTCGTGTCCACTTCATACCT
TTAGACTAATAATAGTGGGTTTGGGAAAGAGAGGCGAATATTAATTGGTC
CATGGTAACCTACCAAGGCGGCACTCGTTCGGAACTACATTGACGTGTAC
TAGCCCCGTGCCGGCGGACTCTCGGCAGTGAACGCCGTCGGTACGCAATC
GTGTGACCCGATGGCGTATGGCGCTTTTGAATGAAAAAATGAAAGCCGCC
GCGGAACTCGGGAGGAATCCCTCAAGTAAGCACCAGATTCTGAGTATGGA
GATGAGCAGACTGATGCGGGACGGGACTGCCGAACCCGTCTCGCGAGACC
AAATTCTCAGGCGCGAACGCGGATAGGGGAATATCCGTTCTCCTGTTCAT
CTGACCACGAGCAGAGTTGGCAACCTACCCGGTCGATCCATACTTTTGCG
ATATGTGTGACCATACATGTGTGTAGTCATCACATATACTGTTGTACAGT
AGAAAGTAAGAATCAACCGGGCAAGGTTGCCATTCCTGCTACTATAGTCC
AGTGGTCAGCTGAACAGGGAAAATGCTTTTTTCCCTGTCCCCGTTCGCGG
CAGATAATTTATTCTCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCAGCC
TGCTCATCTCCATACTCAGACTGAACCAGGTGCTTACTTGCGAGATTCCT
CCCGATTTTCGCGGCGGCGTCCATTTACTTATGTCAACCGCCAGACGCCA
TCGAGTCAGTCCGGAGTTTATCGGGTCACGCAGTTGCGTACCGGTGGTGT
TCACTGCTGAGAGTCCGTCGGCACAAGGCCGATAAACCTCAAGGTAGTTC
CAAACGGGTGCTGCCTTGGCAAGTCACCGTGGACCAACCAATATGCGCCT
CTTCTTTTCCCACACCACGATATTGGTATTAAAACCTGTACAGAGTCTCA
ATTTTCTTTGTACCGTGTATGTTGTCTGTGCAGCATTAAGGTTATTACCT
AGACTCATTAGTTAGGACAGTATTATCACTTGGATGTCGCTTATGATGCC
CCCGCTTCCTGTAGATGCCAAGCTACACTCTATTCCACCTCACGAGTACA
TTGTGCCAACTACTATTACCTTGGAAGCCCCTTCGAAACGCGACCGTCGT
TCGAACAGAATGTTTTCTTTGTCCGGTCATAGTCGTGTTGTACTAGTTCT
AATAATTAGAATAGCGCATCGTCTACTGCTGTACAACATTTACCGAAAGG
CATAAAAGTTATAGTTTTTAGACAGCAGCATCAGTTGAATTAGTACGAAT
TAGACTAAAAGAAATGAAAGCATTCTAATAATAACACAGGCAGTGTCTCC
AAGACCATAAGAGGCCCCGTACACTTTTCAAGTACGAGTTTTTTTTCTCC
GTCAGGCTCTGATCCCGCATGTGGCCCTACCATTTACTGATACTCATGCT
ATATGTGTGACTCTACATAGTAGAGGATCTACTGTACTTTCCGGTGTTGA
CGCATAGAGCTCTACTTATTTGCCATGTGCATAGTCTATTATTGTAAGTA
ACGCACCCTATCAAGTAATGTTGAATGTTTCGTCCGTCTGCAACAAAGGG
AATGGGCTCGGGAATGCTGGTCAAGCGCTCTGGCAAAGTTCCCAGACTGG
AAATGGTTTCGTTCAAAAAGTTGTCAAAGGGCACCCTCGTGCTTGGAGTG
GTTTTCAAGGTCAGCATGAACTGTACTAGACCCGTCTCATATATCCTCGT
GTGAGAATTGTTTTGTACCGCGTCGGTCGATCCCCAGCTCCGCTTGTTCC
GTGGTTGGAGTAGCTCTAGATGTACAGAGGCGTTTTTTCCCTTGTCCGCG
GTATTTTCCTTTTTTAACTGACCGTTTTACATGGCGACCACTCAAGTTGC
TCGTGGCACCCTACTTATTGGAAACCCTGCACGCTATTGCCATCACACGT
CCCCGAGGAGTTCGTTACAAATTGTTGGTATAATGTCTAACGTCATCGAA
TCAATTCCATGCTTCTTGCCATGACACCTTGGTCCAGGTGGATGAAGATG
ACATGGTGGTGTCGCTGACCAGTAGCCTGACT

Coding sequence (CDS) from alignment at F-serratus_M_contig1463:9903..12634-

>mRNA_F-serratus_M_contig1463.3257.1 ID=mRNA_F-serratus_M_contig1463.3257.1|Name=mRNA_F-serratus_M_contig1463.3257.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig1463:9903..12634- (Fucus serratus male)
ATGACGGAGCTCGATCTGTTCCCGAGAGGGAAGACTCCGACGGATAAGTC
TCTTAGCTCTTCGAACCAGAGGAAACCGAGGGATGATACCAGGGCCTCCA
GTAATGATGTCAAGAAGGACCGCAAACGGAAGGCTGTCGGCTCACCACCT
CCGAAGGCCGGAGAACAGGATAGAGACTTCCTCTTTGGGGCGCCCCAAAC
AAAGCCGACTCAAGCGCCCGGGAAGCAGTCTCCCGGGGATAGCAAAGCTC
GGCAACATGGTTTACGCGCAAGCAATGGGCAAGAAAAGATGACGGAGCTC
GATCTGTTCCCGAGAGGGAAGACTCCGACGGATAAGTCTCTTAGCTCTTC
GAACCAGAGGAAACCGAGGGATGATACCAGGGCCTCCAGTAATGATGTCA
AGAAGGACCGCAAACGGAAGGCTGTCGGCTCACCACCTCCGAAGGCCGGA
GAACAGGATAGAGACTTCCTCTTTGGGGCGCCCCAAACAAAGCCGACTCA
AGCGCCCGGGAAGCAGTCTCCCGGGGATAGCAAAGCTCGGCAACATGGTT
TACGCGCAAGCAATGGGCAAGAAAAGGGAATGGGCTCGGGAATGCTGGTC
AAGCGCTCTGGCAAAGTTCCCAGACTGGAAATGGTTTCGTTCAAAAAGTT
GTCAAAGGGCACCCTCGTGCTTGGAGTGGTTTTCAAGGGAATGGGCTCGG
GAATGCTGGTCAAGCGCTCTGGCAAAGTTCCCAGACTGGAAATGGTTTCG
TTCAAAAAGTTGTCAAAGGGCACCCTCGTGCTTGGAGTGGTTTTCAAGGT
GGATGAAGATGACATGGTGGTGTCGCTGACCAGTAGCCTGACTGTGGATG
AAGATGACATGGTGGTGTCGCTGACCAGTAGCCTGACT