mRNA_F-serratus_M_contig1463.3256.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI) HSP 1 Score: 190 bits (482), Expect = 1.570e-53 Identity = 101/125 (80.80%), Postives = 109/125 (87.20%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVTSGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVDH 375
KGLSLSQL KG GVYGSVASAEDHGYVVTLGL+GVTAFLP KD P+ GL+ GQPVEAVIQ VKA ARTVTL+A SLV+SAVT GTSFDLRS+KPGMLVDA V S+L NG+LV FLGYF GCVDH
Sbjct: 243 KGLSLSQLTKGSGVYGSVASAEDHGYVVTLGLDGVTAFLPKKDGPKDGLEPGQPVEAVIQTVKAAARTVTLTADPSLVSSAVTQGTSFDLRSLKPGMLVDAIVDSVLSNGILVSFLGYFAGCVDH 367
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE) HSP 1 Score: 174 bits (440), Expect = 7.140e-48 Identity = 98/127 (77.17%), Postives = 106/127 (83.46%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVTSGTSFDLRSIKPGMLVDAAVKSLLPNGMLV--GFLGYFTGCVDH 375
KGLSLSQL KG GVYGSVASAEDHGYVVTLGL+GVTAFLP KD P+ GL+ GQPVEA VKA ARTVTL+A SLV+SAVT GTSFDLRS+KPGMLVDA V S+L NG+LV FLGYF GCVDH
Sbjct: 293 KGLSLSQLTKGNGVYGSVASAEDHGYVVTLGLDGVTAFLPKKDGPKEGLEPGQPVEAT---VKAAARTVTLTADPSLVSSAVTQGTSFDLRSLKPGMLVDAIVDSVLSNGILVRVSFLGYFAGCVDH 416
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 1.050e-19 Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGG-----LKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVTSGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
+GL L + G + G+VAS EDHGYVV+ GLEGVTAFL K G L G PVE V+ VK +R +T +++ A+T G++ L +KPGMLV+AA+ ++L NG+ + FLG +G V
Sbjct: 259 RGLKLEHVLPGGALMGAVASVEDHGYVVSTGLEGVTAFLARKHVKGGAEVEKALVKGSPVEIVVLDVKEASRAITCGFDPAVLPRALTRGSALTLAGLKPGMLVNAAIDAILKNGLALTFLGGLSGVVS 387
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: A0A7S3MGU8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGU8_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.170e-18 Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAP--EGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVTSGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
+GL++ + G +YG VAS EDHGYV++ G+ G FLP K P + L+ GQP+E V AV A++ TL A V A+T + S+ PGMLV+ V + NG+LV FLG F G +D
Sbjct: 189 RGLAMKHVSVGFPLYGCVASKEDHGYVISAGINGANFFLPVKALPTTKSDLEIGQPIECVTTAVNDGAQSATLRAHPKAVYEALTRSGNLAFTSLIPGMLVNCVVDKKVENGVLVNFLGMFYGVID 314
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: A0A078F5Z4_BRANA (BnaA05g27100D protein n=11 Tax=Brassiceae TaxID=981071 RepID=A0A078F5Z4_BRANA) HSP 1 Score: 89.7 bits (221), Expect = 2.330e-18 Identity = 57/127 (44.88%), Postives = 76/127 (59.84%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVT---SGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
KG SL G V SV S EDHGY++ GL +T F+ + LK GQ ++ V+ + + V+LSA VA +VT SG SFDL + PGM+V+A V+S+L NG+L+GFL YFTG VD
Sbjct: 216 KGFSLDSFQPGMVVTASVKSVEDHGYILHFGLPSITGFIKKSNDGNQELKTGQLIQGVVTNIDKERKIVSLSADPDSVAKSVTKDLSGMSFDL--LIPGMMVNARVQSVLENGILLGFLMYFTGTVD 340
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: A0A078JP77_BRANA (BnaAnng23730D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078JP77_BRANA) HSP 1 Score: 85.5 bits (210), Expect = 8.920e-18 Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVT---SGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
KG SL G V +V S EDHGY++ G+ +T F+ LK GQ ++ V+ + + V+LS+ VA VT SG SFDL + PGM+V+A V+S L NG+L+GFL YFTG VD
Sbjct: 88 KGFSLDSFQPGMVVTANVKSVEDHGYILQFGMPSITGFIKKSHEGTRELKTGQLIQGVVTNIDKERKIVSLSSDPDSVAKCVTKDLSGMSFDL--LIPGMMVNARVQSALENGLLLGFLMYFTGTVD 212
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: A0A3P5ZAR7_BRACM (Uncharacterized protein n=3 Tax=Brassica campestris TaxID=3711 RepID=A0A3P5ZAR7_BRACM) HSP 1 Score: 87.4 bits (215), Expect = 1.500e-17 Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVT---SGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
KG SL G SV S EDHGY++ GL +T F+ + LK GQ ++ V+ + + V+LSA VA VT SG SFDL + PGM+V+A V+S+L NG+L+GFL YFTG VD
Sbjct: 216 KGFSLDSFQPGMVFTASVKSVEDHGYILHFGLPSITGFIKKSNDGNQELKTGQLIQGVVTNIDKERKIVSLSADPDSVAKCVTKDLSGMSFDL--LIPGMMVNARVQSVLENGILLGFLMYFTGTVD 340
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: A0A078IEV4_BRANA (BnaAnng09360D protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A078IEV4_BRANA) HSP 1 Score: 85.9 bits (211), Expect = 5.130e-17 Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVT---SGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
KG SL G V +V S EDHGY++ G+ +T F+ LK GQ ++ V+ + + V+LS+ VA VT SG SFDL + PGM+V+A V+S L NG+L+GFL YFTG VD
Sbjct: 218 KGFSLDSFQPGMVVTANVKSVEDHGYILQFGMPSITGFIKKSHEETRELKTGQLIQGVVTNIDKERKIVSLSSDPDSVAKCVTKDLSGMSFDL--LIPGMMVNARVQSALENGLLLGFLMYFTGTVD 342
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: A0A0D3AED5_BRAOL (Uncharacterized protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3AED5_BRAOL) HSP 1 Score: 85.5 bits (210), Expect = 7.090e-17 Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVT---SGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
KG SL G V +V S EDHGY++ G+ +T F+ LK GQ ++ V+ + + V+LS+ VA VT SG SFDL + PGM+V+A V+S L NG+L+GFL YFTG VD
Sbjct: 216 KGFSLDSFQPGMVVTANVKSVEDHGYILQFGMPSITGFIKKSHEGTRELKTGQLIQGVVTNIDKERKIVSLSSDPDSVAKCVTKDLSGMSFDL--LIPGMMVNARVQSALENGLLLGFLMYFTGTVD 340
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Match: UPI0006AA97EB (rRNA biogenesis protein RRP5-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AA97EB) HSP 1 Score: 85.5 bits (210), Expect = 7.090e-17 Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 1 KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKAGQPVEAVIQAVKAVARTVTLSAKASLVASAVT---SGTSFDLRSIKPGMLVDAAVKSLLPNGMLVGFLGYFTGCVD 372
KG SL G V +V S EDHGY++ G+ +T F+ LK GQ ++ V+ + + V+LS+ VA VT SG SFDL + PGM+V+A V+S L NG+L+GFL YFTG VD
Sbjct: 216 KGFSLDSFQPGMVVTANVKSVEDHGYILQFGMPSITGFIKKSHEGTRELKTGQLIQGVVTNIDKERKIVSLSSDPDSVAKCVTKDLSGMSFDL--LIPGMMVNARVQSALENGLLLGFLMYFTGTVD 340 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1463.3256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1463.3256.1 >prot_F-serratus_M_contig1463.3256.1 ID=prot_F-serratus_M_contig1463.3256.1|Name=mRNA_F-serratus_M_contig1463.3256.1|organism=Fucus serratus male|type=polypeptide|length=125bp KGLSLSQLGKGCGVYGSVASAEDHGYVVTLGLEGVTAFLPAKDAPEGGLKback to top mRNA from alignment at F-serratus_M_contig1463:7990..9109- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1463.3256.1 ID=mRNA_F-serratus_M_contig1463.3256.1|Name=mRNA_F-serratus_M_contig1463.3256.1|organism=Fucus serratus male|type=mRNA|length=1120bp|location=Sequence derived from alignment at F-serratus_M_contig1463:7990..9109- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1463:7990..9109- >mRNA_F-serratus_M_contig1463.3256.1 ID=mRNA_F-serratus_M_contig1463.3256.1|Name=mRNA_F-serratus_M_contig1463.3256.1|organism=Fucus serratus male|type=CDS|length=750bp|location=Sequence derived from alignment at F-serratus_M_contig1463:7990..9109- (Fucus serratus male)back to top |