mRNA_F-serratus_M_contig1463.3261.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1463.3261.1
Unique NamemRNA_F-serratus_M_contig1463.3261.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1463.3261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1463contigF-serratus_M_contig1463:193412..195470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size346
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1463.3261.1prot_F-serratus_M_contig1463.3261.1Fucus serratus malepolypeptideF-serratus_M_contig1463 193413..195470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.9367006-CDS-F-serratus_M_contig1463:193412..1935011622929445.9367006-CDS-F-serratus_M_contig1463:193412..193501Fucus serratus maleCDSF-serratus_M_contig1463 193413..193501 -
1690962856.2136307-CDS-F-serratus_M_contig1463:193412..1935011690962856.2136307-CDS-F-serratus_M_contig1463:193412..193501Fucus serratus maleCDSF-serratus_M_contig1463 193413..193501 -
1622929445.9768865-CDS-F-serratus_M_contig1463:194165..1942491622929445.9768865-CDS-F-serratus_M_contig1463:194165..194249Fucus serratus maleCDSF-serratus_M_contig1463 194166..194249 -
1690962856.2235038-CDS-F-serratus_M_contig1463:194165..1942491690962856.2235038-CDS-F-serratus_M_contig1463:194165..194249Fucus serratus maleCDSF-serratus_M_contig1463 194166..194249 -
1622929445.9949496-CDS-F-serratus_M_contig1463:195104..1951911622929445.9949496-CDS-F-serratus_M_contig1463:195104..195191Fucus serratus maleCDSF-serratus_M_contig1463 195105..195191 -
1690962856.232103-CDS-F-serratus_M_contig1463:195104..1951911690962856.232103-CDS-F-serratus_M_contig1463:195104..195191Fucus serratus maleCDSF-serratus_M_contig1463 195105..195191 -
1622929446.0127177-CDS-F-serratus_M_contig1463:195385..1954701622929446.0127177-CDS-F-serratus_M_contig1463:195385..195470Fucus serratus maleCDSF-serratus_M_contig1463 195386..195470 -
1690962856.2434359-CDS-F-serratus_M_contig1463:195385..1954701690962856.2434359-CDS-F-serratus_M_contig1463:195385..195470Fucus serratus maleCDSF-serratus_M_contig1463 195386..195470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1463.3261.1

>prot_F-serratus_M_contig1463.3261.1 ID=prot_F-serratus_M_contig1463.3261.1|Name=mRNA_F-serratus_M_contig1463.3261.1|organism=Fucus serratus male|type=polypeptide|length=115bp
GALFLDFTEHTTFHGESTWNNNSAGGDGGALFVNKWTYYTAFDGASSWSQ
SNAGGKGGAIFTVEEAVCFPNGTSFENNVASSGEGDDIYPEELMISVCSG
RARLGGPIGFFSRAV
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mRNA from alignment at F-serratus_M_contig1463:193412..195470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1463.3261.1 ID=mRNA_F-serratus_M_contig1463.3261.1|Name=mRNA_F-serratus_M_contig1463.3261.1|organism=Fucus serratus male|type=mRNA|length=2059bp|location=Sequence derived from alignment at F-serratus_M_contig1463:193412..195470- (Fucus serratus male)
GGTGCACTTTTTCTCGATTTTACTGAACATACCACGTTCCATGGTGAATC
AACGTGGAACAACAACTCTGCGGGAGGCGATGGCGGTAAGATCCACACAG
TTTTCACAGCCAAGTGGTACCGATCCATTTACTAAGTGGTGCTGTTAGCA
GCTGGGTAGTACAACAGACAAACGATTTTGTGCATTGAGGAACTCCACAT
AAGGCCGAACCATTGAATTACGAACTTATTAATCTTCTTGATTTCGCCGT
TGTCGCGTTCTGTACGCTGCATACCTAAGGTGCACTGTTCGTCAATAAAT
GGACCTATTACACGGCGTTCGATGGAGCGAGCTCGTGGTCGCAGAGCAAC
GCTGGAGGAAAGGGCGGTGAGTCGCAGAAGCTACCGTAGGTTATGACCTA
GAAAAGATGTATCGAGTCGGCCAACGATTAGCGGGGGCGGGGATGTCACA
AATTTATCCCCGTTTTGAATAGAGACTGCCCGAAAGTAGTCCCTCCCGGG
ATCTTATTTGACCAACCCTCTGGTGAAATGAGTTGAATTCAGGGCAAGCT
TGCCGACCATGTATTAATCAATAGGAGGTCATGTAGTCCTATCCCCGGGC
GGGGTGGTTTTGGTGACCTCCCCGTGGACGGAGTTGTCGCATCCCATCCC
CCACCAATCGTTGAGAGAGGGGACGTCTACCCTCGGCAGGAATGCATCGT
GAATGTTGTTAATACTAAAATAAGCAAATGCGGAACAGGAAATGCACCAC
TTAGCAAGCGGACTAAGGCATCAACCACGGGGGAGCCAAATATGCCGGAA
AACTGGTAGCTCTACCGCATGCACCTAGTTGAACGTATATAAGTAACACA
TACATCCAGCAGCAGGCAATCGTGAGTGTTGGCCAAATAAGAGAGTTAAA
AGTGTCGCTGCTGAGATTGCCGACGAGTTGTCGGGGTTGGATCATTTCAT
TGCCAGCAAGTATCGCAGTAAGCCTTATTTCCCTATCTTAGTAGTAGAGG
GTTGTGTGCACGGTGTGTAGTGTTTGGTTCATCCTCTGCATCTTAGTGCG
TAAGGGGGCTCGTATACCGGTAATCTCATGTGCACCTCTTCTCGATCGCG
AGCCGCACCCCTAGAGGTAGAAATTTCCCCCCATATTTGGTAAACCTCCA
TACACGGCTTGGGGTGTATTAACACGCTCCATCCGGTAAATGTACCTTCT
GCCTCTCGTTCCTATCAATAGGGGCTATTTTCACAGTCGAAGAAGCTGTA
TGCTTTCCCAACGGAACTTCCTTCGAGAACAACGTCGCATCTTCCGGAGA
GGGAGGTAGGAAAAGTCGCATAGGGTAAAACACACCCTTCAAGTGCTTTT
AGTCCAACCGGTTTTCGGAACGTGTTCCCTTTTCTGGATGATATCGTTCC
GTCGTTTTGGACAACGTAACACCACAGGGAGTGCGACTTAGTTCGTACCC
AAACGGCATTCCACACCGGGGAGATCCAGGGGTGAACCTTAACAAATAAC
ATGTCGTCGGACGTCTCGCTTCGAAACTTCTTAGACACGGAGACACCATC
ACCACACCATCACATCCTCACAGTCAGCGCGTACTCAGAAATTCGAATAT
GACAGCACATTTCAAAGTATGCTTGACCCATGTCGGACACTTAGTGGCTT
CGTTTCATTCAGTTAGTTCGTCGGTTATCGCCAGCCATGGCGGCTAGCTG
GTCGAGACACGTCGTTATTAAACCCAAACCATACGACTCGATCGAAGGTA
AACTGATGGCCTCACAACGCGATGAGTTGACGTCTGCTAAGTTTATTCGT
CATATATACATGTGTATTTTGCTTCAAAACCACGTAAAAGCTTTTGCAAG
AACAGCTGTATCGTTCGCGCGTTATTTCTACATATTTTGCAATCCATGAA
CCCCCCCATGAACAACATATGGTCGCTAGATAGACTCCTTTCCGAACTAT
CGTGTGATACGGCAAACAGACGACATCTACCCCGAAGAGTTGATGATCAG
CGTCTGCTCCGGTAGGGCGAGGCTGGGCGGCCCCATCGGCTTCTTCTCGA
GGGCGGTGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1463:193412..195470-

>mRNA_F-serratus_M_contig1463.3261.1 ID=mRNA_F-serratus_M_contig1463.3261.1|Name=mRNA_F-serratus_M_contig1463.3261.1|organism=Fucus serratus male|type=CDS|length=690bp|location=Sequence derived from alignment at F-serratus_M_contig1463:193412..195470- (Fucus serratus male)
GGTGCACTTTTTCTCGATTTTACTGAACATACCACGTTCCATGGTGAATC
AACGTGGAACAACAACTCTGCGGGAGGCGATGGCGGGTGCACTTTTTCTC
GATTTTACTGAACATACCACGTTCCATGGTGAATCAACGTGGAACAACAA
CTCTGCGGGAGGCGATGGCGGTGCACTGTTCGTCAATAAATGGACCTATT
ACACGGCGTTCGATGGAGCGAGCTCGTGGTCGCAGAGCAACGCTGGAGGA
AAGGGCGGTGCACTGTTCGTCAATAAATGGACCTATTACACGGCGTTCGA
TGGAGCGAGCTCGTGGTCGCAGAGCAACGCTGGAGGAAAGGGCGGGGCTA
TTTTCACAGTCGAAGAAGCTGTATGCTTTCCCAACGGAACTTCCTTCGAG
AACAACGTCGCATCTTCCGGAGAGGGAGGGGCTATTTTCACAGTCGAAGA
AGCTGTATGCTTTCCCAACGGAACTTCCTTCGAGAACAACGTCGCATCTT
CCGGAGAGGGAGACGACATCTACCCCGAAGAGTTGATGATCAGCGTCTGC
TCCGGTAGGGCGAGGCTGGGCGGCCCCATCGGCTTCTTCTCGAGGGCGGT
GACGACATCTACCCCGAAGAGTTGATGATCAGCGTCTGCTCCGGTAGGGC
GAGGCTGGGCGGCCCCATCGGCTTCTTCTCGAGGGCGGTG
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