mRNA_F-serratus_M_contig1462.3253.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 159 bits (403), Expect = 9.010e-45 Identity = 84/215 (39.07%), Postives = 128/215 (59.53%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE +G+LMW T TRPD+A A + ++ +P+ +HWRA + RT D+ IT+ + + DA++ + RR SGG V+ GGG +SWFS ++++EYV+LA+V+ + FL+QV+ F+ P I + EDN+GAI++ N ISN ++H+D RHH +R+ V + I +V+S QHAD LTKAL+ FE H
Sbjct: 32 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECH 246
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.150e-42 Identity = 85/215 (39.53%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE +G+LMW T TRPD+A A + ++ +P+ +HWRA + RT D+ IT+ + + DA++ + RR SGG V+ GGG ISWFS ++++EYV+LA+V+ + FL+QV F+ P I + EDN+GAI++ N ISN ++H+D RHH +R+ V + I +V+S QHAD LTKAL FE H
Sbjct: 216 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 430
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 156 bits (395), Expect = 4.940e-41 Identity = 85/215 (39.53%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE +G+LMW T TRPD+A A + ++ +P+ +HWRA + RT D+ IT+ + + DA++ + RR SGG V+ GGG ISWFS ++++EYV+LA+V+ + FL+QV F+ P I + EDN+GAI++ N ISN ++H+D RHH +R+ V + I +V+S QHAD LTKAL FE H
Sbjct: 390 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFH 604
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 150 bits (378), Expect = 6.180e-41 Identity = 83/215 (38.60%), Postives = 124/215 (57.67%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE +G+LMW T TRP++A A+ + ++ +P+ +HWRA + RT D+ IT+G + + DA++ + RR SGG V+ G G ISWFS ++++EYV+LA+V+ + FL+QV F+ P I + EDN+GAI++ N ISN ++H D RHH + + V + I V+S QHAD LTKAL FE H
Sbjct: 71 PFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFH 285
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.960e-40 Identity = 85/215 (39.53%), Postives = 127/215 (59.07%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE +G+LMW T TRPD+A A + ++ +P+ +HWRA + RT D+ IT+ + + DA++ + RR SGG VI GGG ISWFS ++++EYV+LA+V+ + FL+QV F+ P + I + EDN+GAI++ N ISN ++H+D RHH +R+ V + I +V+S Q+AD LTKAL FE H
Sbjct: 675 PFRELIGSLMWLATQTRPDIANAVRAVARYYASPKEIHWRAGLGILGCVVRTSDLGITFRRRSVAGLSIEVFADADYASKAADRRSVSGGLVICGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMSCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQYADFLTKALHAGDFEFH 889
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 155 bits (391), Expect = 7.460e-40 Identity = 84/215 (39.07%), Postives = 126/215 (58.60%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE +G+LMW T TRPD+A A + ++ +P+ +HWRA + RT D+ IT+ + + DA++ + RR SGG V+ GGG ISWFS ++++EYV+LA+V+ + FL+QV F+ P I + EDN+GAI++ N ISN ++H+D RHH +R+ V + I +V+S QHA+ LTKAL FE H
Sbjct: 911 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFH 1125
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.240e-39 Identity = 82/215 (38.14%), Postives = 125/215 (58.14%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE VG+LMW T TRPD+A A + ++ +P+ VHW+AA + RT + IT+ + + DA++ + RR SGG V+ GGG ++WFS ++++EYVA+A+V+ + FL+QV F+ P I + EDN+GAI++ N I+N ++H+D RHH +R+ V + I NV + QHAD LTKA+ SF H
Sbjct: 99 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALH 313
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.380e-39 Identity = 83/215 (38.60%), Postives = 127/215 (59.07%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE +G+L+W T TRPD+A A + ++ +P+ +HWRA + RT D+ IT+G + + DA++ + RR SGG V+ GGG ISWFS ++++EYV++A+V+ L FL++V F+ P I + EDN+ A+++ N ISN ++H+D RHH +R+ V + I +V+S QHAD LTKAL V FE H
Sbjct: 907 PFRELIGSLVWLATQTRPDIANALRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKALHVGDFEFH 1121
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.360e-38 Identity = 83/215 (38.60%), Postives = 121/215 (56.28%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE VG+LMW T TRP +A A + ++ +P+ VHW AA RT I++ + DA+F + RR SGG V GGGA+SWFS ++++EYVAL +VV + FL+Q+ F+ P + I I EDN+GAI++ N ISN ++H+D RHH +R+ V + +V S Q AD LTK+L ++FE+H
Sbjct: 70 PFRELVGSLMWLATQTRPAIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAFESH 284
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.260e-38 Identity = 81/215 (37.67%), Postives = 125/215 (58.14%), Query Frame = 1
Query: 13 PYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARQNLWRTKDVEITYGGTPGSCTKWSTWEDANFVTCPDTRRLASGGAVILGGGAISWFS-----TATPSSKSEYVALAEVVNSLRFLQQVKGFLTPPIDNNII-IREDNEGAIKMPTNRISNRCTRHVDARHHIVRDAVNSGVVQIHNVKSGEQHADVLTKALDVNSFETH 639
P+RE VG+LMW T TRPD+A A + ++ +P+ VHW+AA + RT + IT+ + + DA++ + RR SGG V+ GGG ++WFS ++++EYVA+A+V+ + FL+QV F+ P I + EDN+GAI++ N I+N ++H+D RHH +R+ V + I +V + QHAD LTKA+ SF H
Sbjct: 154 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALH 368 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1462.3253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1462.3253.1 >prot_F-serratus_M_contig1462.3253.1 ID=prot_F-serratus_M_contig1462.3253.1|Name=mRNA_F-serratus_M_contig1462.3253.1|organism=Fucus serratus male|type=polypeptide|length=214bp MRVTPYREAVGALMWAVTMTRPDVAYASHQLGKFNDNPRPVHWRAAKRARback to top mRNA from alignment at F-serratus_M_contig1462:117185..117826+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1462.3253.1 ID=mRNA_F-serratus_M_contig1462.3253.1|Name=mRNA_F-serratus_M_contig1462.3253.1|organism=Fucus serratus male|type=mRNA|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig1462:117185..117826+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1462:117185..117826+ >mRNA_F-serratus_M_contig1462.3253.1 ID=mRNA_F-serratus_M_contig1462.3253.1|Name=mRNA_F-serratus_M_contig1462.3253.1|organism=Fucus serratus male|type=CDS|length=1284bp|location=Sequence derived from alignment at F-serratus_M_contig1462:117185..117826+ (Fucus serratus male)back to top |