mRNA_F-serratus_M_contig1460.3249.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1460.3249.1
Unique NamemRNA_F-serratus_M_contig1460.3249.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1460.3249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1460contigF-serratus_M_contig1460:115046..115352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOB-fold nucleic acid-binding domain protein similar to BRCA2
Ec32 orthologEc-03_002260.1
Exons1
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929445.006867-CDS-F-serratus_M_contig1460:115045..1153511622929445.006867-CDS-F-serratus_M_contig1460:115045..115351Fucus serratus maleCDSF-serratus_M_contig1460 115046..115351 +
1690962855.7616527-CDS-F-serratus_M_contig1460:115045..1153511690962855.7616527-CDS-F-serratus_M_contig1460:115045..115351Fucus serratus maleCDSF-serratus_M_contig1460 115046..115351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1460.3249.1prot_F-serratus_M_contig1460.3249.1Fucus serratus malepolypeptideF-serratus_M_contig1460 115046..115351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1460.3249.1

>prot_F-serratus_M_contig1460.3249.1 ID=prot_F-serratus_M_contig1460.3249.1|Name=mRNA_F-serratus_M_contig1460.3249.1|organism=Fucus serratus male|type=polypeptide|length=102bp
RVIDCNPNELVRPAPARAREVLRRTRSVTGFVSSFDPRASALDDGFIGIR
VDDGEGVRVLLLSRLVLTQLFRGFLDGNGNGCRRDLTVRGAHVSMIIDGE
SA
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mRNA from alignment at F-serratus_M_contig1460:115046..115352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1460.3249.1 ID=mRNA_F-serratus_M_contig1460.3249.1|Name=mRNA_F-serratus_M_contig1460.3249.1|organism=Fucus serratus male|type=mRNA|length=307bp|location=Sequence derived from alignment at F-serratus_M_contig1460:115046..115352+ (Fucus serratus male)
CGGGTAATAGATTGCAATCCAAACGAGTTAGTCCGTCCAGCACCGGCTCG
AGCACGGGAGGTTTTACGAAGAACGCGCTCGGTCACCGGTTTCGTGTCAT
CTTTCGATCCTCGAGCTTCTGCATTGGATGATGGCTTTATAGGGATACGG
GTGGACGACGGTGAGGGTGTTCGGGTGCTACTATTGTCACGCCTCGTGCT
TACGCAGCTTTTCCGAGGATTCCTGGACGGAAATGGAAATGGCTGTCGGC
GCGATTTGACTGTTCGGGGTGCCCATGTTTCCATGATAATCGACGGCGAA
AGCGCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1460:115046..115352+

>mRNA_F-serratus_M_contig1460.3249.1 ID=mRNA_F-serratus_M_contig1460.3249.1|Name=mRNA_F-serratus_M_contig1460.3249.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig1460:115046..115352+ (Fucus serratus male)
CGGGTAATAGATTGCAATCCAAACGAGTTAGTCCGTCCAGCACCGGCTCG
AGCACGGGAGGTTTTACGAAGAACGCGCTCGGTCACCGGTTTCGTGTCAT
CTTTCGATCCTCGAGCTTCTGCATTGGATGATGGCTTTATAGGGATACGG
GTGGACGACGGTGAGGGTGTTCGGGTGCTACTATTGTCACGCCTCGTGCT
TACGCAGCTTTTCCGAGGATTCCTGGACGGAAATGGAAATGGCTGTCGGC
GCGATTTGACTGTTCGGGGTGCCCATGTTTCCATGATAATCGACGGCGAA
AGCGCGCGGGTAATAGATTGCAATCCAAACGAGTTAGTCCGTCCAGCACC
GGCTCGAGCACGGGAGGTTTTACGAAGAACGCGCTCGGTCACCGGTTTCG
TGTCATCTTTCGATCCTCGAGCTTCTGCATTGGATGATGGCTTTATAGGG
ATACGGGTGGACGACGGTGAGGGTGTTCGGGTGCTACTATTGTCACGCCT
CGTGCTTACGCAGCTTTTCCGAGGATTCCTGGACGGAAATGGAAATGGCT
GTCGGCGCGATTTGACTGTTCGGGGTGCCCATGTTTCCATGATAATCGAC
GGCGAAAGCGCG
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