mRNA_F-serratus_M_contig1458.3238.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1458.3238.1 vs. uniprot
Match: D8LF10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF10_ECTSI) HSP 1 Score: 543 bits (1400), Expect = 5.970e-183 Identity = 348/704 (49.43%), Postives = 432/704 (61.36%), Query Frame = 1
Query: 31 MEWRNLEVWRRQRPYITAELRKDAVDHMARLGLATSFALVVGIAEGTRVSAGKGDIKFPLRYAVYNIIPSFVGGKVSPASVASSMASAPPLRPCLRAVAQATNLRALRTAVAGCSVISIIFQMTLAGGRGAQAYEQAIAEGREVPSISLYCPNGVNRSGAVVRLCGVLGLEPALAA---AQDGYRTPVLPVVIAGSTVHGADRISTKSKTKSRSSAALPEGALAAVAKRSPRPCYYRIDAGKLFCRKAWRPVASKIANSTRLKGG-DIVLVLEADTLSSETPQSLLACPVETKVEAVSDFEGASSEHFGADEAIWGLTMLRRGLEEEDGGRGDG-VVGVVLAGTRLADFEESI---VSIDARAALLLSVLAWAEQCAAE---VAGATDSSP----------PLG----------NRDPTALNADAVSA-----------PDEPGAAAKTKQS---------------GGEADSEATETDQGVVMENIETFGILARVLGTLERVGFGVRSVVAPVGRLRFAVGRVTSAVYGWL----ERKKTVTDREKSRVFLYDTDDKSSFEWLAAQMLKQGWTVRRAGEHHAITNAPKKGQKGSVSAVPVLVHRCSDERTMTTAASHLARGVDVCLVVHSLDCGVEARRLLLRGKPASPPEE--AWRRGAIEVICTAEVGEDLFQFARDQLKSGSTPVQVQAVLDNLLGAFYE 1953
M WR++EVWRRQRPY+ AE+RKDA DH+ARLGLATSF VVG+AEG VSA KGD+KFP RYA+YN IPSFVGGKV +SVAS+MA+ PP+R C RA A A NLRALRTAVAG +V+S++FQ+ LAGGRG +AY+QA+A+G EVPS S G +G VVRLCG GLEPAL A + GYRTP+LPVV++G G S ++ +S+ L EGAL+AVAK SPRPCYYRI ++FCR+AW+PV S +A + +IVLV+EAD +SS+ PQ+L++ P E K G D+A+WGL MLRR LEE RG G + V+LA RL E S VSIDARAALLLSVL+WAEQC + +A ++SP P G +RDP L A +A PDE A + G+A + A + +QG + ARVL LE VG GVR A +G++R +GR AV WL R+ T D +RV +YDTDD SF WLAA+MLK GW + R T+ + + G VPVLVH CSDE+T+T AA H+ +G +VC VVHS DCGVEARRLL+ + P+E A R+ EVICTAEVGEDLFQF R QL SG+T QVQ LD+L GAFYE
Sbjct: 1 MAWRDVEVWRRQRPYVNAEIRKDAPDHLARLGLATSFVFVVGMAEGATVSALKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQVALAGGRGMEAYQQAVADGLEVPSWSA-SGFGDGSAGGVVRLCGARGLEPALVAPMAGRGGYRTPILPVVVSGG---GFGHRSGGWRSSDPASSFLSEGALSAVAKVSPRPCYYRIGGDRVFCREAWQPVVSALAEAGATSDSREIVLVMEADAVSSDAPQTLMSPPREVK---------GGEGRLGEDQAVWGLAMLRRALEERRRERGAGRLASVLLAERRLVCAEGSTTTTVSIDARAALLLSVLSWAEQCHGDDDALADEANASPGNSGSSADGEPAGFVAEPIALGEDRDPAGLTTAAAAADKLDTTEGFVAPDEELGADTAAVAEXXXXXXXXXXXXGVDGDATARADDDEQG------PSASTAARVLVVLEGVGRGVRVAAARLGQVRSTMGRSLGAVSAWLVENGRRRPTTPDAGINRVLVYDTDDDESFRWLAAKMLKVGWAIERQ------TSERLRNEAG----VPVLVHSCSDEKTLTAAAGHVVKGANVCAVVHSWDCGVEARRLLVGARETVLPDEGRAARQPCAEVICTAEVGEDLFQFVRWQLLSGATTEQVQQGLDDLFGAFYE 675
BLAST of mRNA_F-serratus_M_contig1458.3238.1 vs. uniprot
Match: A0A6H5K3C7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C7_9PHAE) HSP 1 Score: 371 bits (953), Expect = 6.120e-118 Identity = 252/551 (45.74%), Postives = 317/551 (57.53%), Query Frame = 1
Query: 391 FQMTLAGGRGAQAYEQAIAEGREVPSISLYCPNGVN--RSGAVVRLCGVLGLEPALAA---AQDGYRTPVLPVVIAGSTVHGADRISTKSKTKSRSSAALPEGALAAVAKRSPRPCYYRIDAGKLFCRKAWRPVASKIANSTRLKGG-DIVLVLEADTLSSETPQSLLACPVETKVEAVSDFEGASSEHFGADEAIWGLTMLRRGLEEEDGGRGDGVVGVVLAGTRLADFEESIVSIDARAALLLSVLAWAEQC----------------AAEVAGATDSSPPLGNRDPTALNADAVSAPDEPGAAAKTKQSGGEADSEATETDQGVVMENIETFGILARVLGTLERVGFGVRSVVAPVGRLRFAVGRVTSAVYGWL----ERKKTVTDREKSRVFLYDTDDKSSFEWLAAQMLKQGWTVRRAGEHHAITNAPKKGQKGSVSAVPVLVHRCSDERTMTTAASHLARGVD--VCLVVHSLDCGVEARRLLLRGKPASPPEE--AWRRGAIEVICTAEVGEDLFQFARDQLKSGSTPVQVQAVLDNLLGAFYE 1953
FQ+ LAGGRG +AY+QA+A+G EVPS S P+G +G VVRLCG GLEPAL A + GYRTP+LPVV++G G S ++ + L EGAL+AVAK SPRPCYYRI ++FC++AW+PV S +A + + VLV+EAD +SS+ PQ+L++ P E EG G D+A+WGL MLRR LEE +G G + VL R E VSIDARAALLLSVL WA QC A V G T+ S G + + AV+ +E T G+A + A + +QG RVL LER+G GVR A +G++R A+GR AV WL R+ T D RV +YDT D SF WLAA+MLK GWTV R T+ + + G VPVLVH CSDE+T+T AA H+ G + VC VVH+ DCGVEARRLL+ + P E A R+ ++EVICTAEVGEDLFQF R QL SG+T QVQ LD+L GAFYE
Sbjct: 11 FQVALAGGRGMEAYQQAVADGLEVPSFS---PSGFGDGSAGGVVRLCGARGLEPALVAPVAGRGGYRTPILPVVVSGG---GFRHRSGGWRSSDPAPCFLSEGALSAVAKVSPRPCYYRIGGDRVFCQEAWQPVVSALAEAGATSDSRERVLVMEADAVSSDAPQALMSPPREV--------EGGEGR-LGEDQAVWGLAMLRRALEERRREQGAGRLASVLLAERRLVCAEGSVSIDARAALLLSVLCWAGQCQGDDDALADEATTAAAVAGVLGTTEGSVAPGEE--SGADTAAVAEEEE-----DTMGVDGDATARADDDEQG------RPASTAVRVLVVLERMGRGVRVAAARLGQVRSAMGRSLGAVSAWLAKNARRRPTTPDAAIKRVLVYDTHDDESFRWLAAKMLKVGWTVERQ------TSERLRNEAG----VPVLVHSCSDEKTLTAAAGHVVEGANGKVCAVVHNWDCGVEARRLLVEARETVLPNEGRAARQPSVEVICTAEVGEDLFQFVRWQLLSGATTDQVQQGLDDLFGAFYE 523
BLAST of mRNA_F-serratus_M_contig1458.3238.1 vs. uniprot
Match: A0A6H5K1Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z0_9PHAE) HSP 1 Score: 174 bits (441), Expect = 6.820e-48 Identity = 86/123 (69.92%), Postives = 103/123 (83.74%), Query Frame = 1
Query: 31 MEWRNLEVWRRQRPYITAELRKDAVDHMARLGLATSFALVVGIAEGTRVSAGKGDIKFPLRYAVYNIIPSFVGGKVSPASVASSMASAPPLRPCLRAVAQATNLRALRTAVAGCSVISIIFQM 399
M WR++EVWRRQRPY+ AE+RKDA DH+ARLGLATSF VVG+AEG VS KGD+KFP RYA+YN IPSFVGGKV +SVAS+MA+ PP+R C RA A A NLRALRTAVAG +V+S++FQ+
Sbjct: 1 MAWRDVEVWRRQRPYVNAEIRKDAPDHLARLGLATSFVFVVGMAEGATVSTVKGDLKFPTRYAIYNTIPSFVGGKVPASSVASAMATPPPVRACPRAAAHAANLRALRTAVAGYTVLSVVFQV 123
BLAST of mRNA_F-serratus_M_contig1458.3238.1 vs. uniprot
Match: A0A836CIR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR3_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.260e-6 Identity = 57/172 (33.14%), Postives = 83/172 (48.26%), Query Frame = 1
Query: 121 LGLATSFALVVGIAEGTRVSAGKGDIKFPLRYAVYNIIPSFVGGKVSPASVASSM---ASAPPLRPCLRAVAQATNLRALRTAVAGCSVISIIFQMTLAGGRGAQAYEQAIAEGREVPSISLYCP-NGVNRSGAVVRLCGVLGLEPALAAAQDGYRTPVLPVVIAGSTVHGA 624
LG A +F L VG EG +A +KF YA N++PSFVG K+S ++VA+ + A+ L A Q RA+RT VA + +S++ +M G + + G + + S + +GV R VRLC G A A Q G LPV+++G GA
Sbjct: 14 LGSAAAFTLAVGTLEGACAAAPAARVKFAPAYAAANMLPSFVGQKISASTVAALLRMDAATALLAHTPNAALQMAVCRAVRTGVAAFTGVSVVLKMAQRAGCERDRQLELVRSGAALVNPSRFVDASGVQR----VRLCDSSGF--ARAVTQGG----ALPVLVSGGQRRGA 175 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1458.3238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1458.3238.1 >prot_F-serratus_M_contig1458.3238.1 ID=prot_F-serratus_M_contig1458.3238.1|Name=mRNA_F-serratus_M_contig1458.3238.1|organism=Fucus serratus male|type=polypeptide|length=647bp MEWRNLEVWRRQRPYITAELRKDAVDHMARLGLATSFALVVGIAEGTRVSback to top mRNA from alignment at F-serratus_M_contig1458:180361..187974+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1458.3238.1 ID=mRNA_F-serratus_M_contig1458.3238.1|Name=mRNA_F-serratus_M_contig1458.3238.1|organism=Fucus serratus male|type=mRNA|length=7614bp|location=Sequence derived from alignment at F-serratus_M_contig1458:180361..187974+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1458:180361..187974+ >mRNA_F-serratus_M_contig1458.3238.1 ID=mRNA_F-serratus_M_contig1458.3238.1|Name=mRNA_F-serratus_M_contig1458.3238.1|organism=Fucus serratus male|type=CDS|length=3882bp|location=Sequence derived from alignment at F-serratus_M_contig1458:180361..187974+ (Fucus serratus male)back to top |