mRNA_F-serratus_M_contig1438.3135.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1438.3135.1
Unique NamemRNA_F-serratus_M_contig1438.3135.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 4.550e-55
Identity = 102/214 (47.66%), Postives = 140/214 (65.42%), Query Frame = 3
Query:  426 EEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTK 1064
            ++ EE+  +P+RE +G+LMW AT TRPDIA  VRAVAR+C +P   H +A + I  Y++ T D GI +  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+    K + + +V S  QHAD LTK
Sbjct:  207 DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTK 420          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 5.290e-55
Identity = 99/214 (46.26%), Postives = 140/214 (65.42%), Query Frame = 3
Query:  426 EEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTK 1064
            ++ EE+  +P+RE +G+LMW AT TRPDIA  VRAVAR+C +P   H +A + I  Y++ T D GI +  G   GL ME + D+D+ +    RRSVSG ++M   G +SW SR Q+     T+EAEYV+LA+ +K VLFLRQV+ F+ P   +  + V EDN+GAI+LA N  ++  +KHIDV+HH +R+    K + + +V S  QHAD LTK
Sbjct:   23 DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTK 236          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.300e-53
Identity = 101/215 (46.98%), Postives = 139/215 (64.65%), Query Frame = 3
Query:  426 EEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRD-ASDAKRVRVAYVRSEDQHADLLTK 1064
            ++ EE+  +P+RE +G+LMW AT TRPDIA  VRAVAR+C +P   H +A + I  Y++ T D GI +  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++   KHIDV+HH +R+     K + + +V S  QHAD LT+
Sbjct:  106 DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTR 320          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.400e-53
Identity = 102/214 (47.66%), Postives = 140/214 (65.42%), Query Frame = 3
Query:  426 EEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTK 1064
            ++ EE+  +P+RE +G+LMW AT TRPDIA  VRAVAR+C +P   H +A + I  Y++ T D GI +  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+LA+ +K VLFLRQV  FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+    K + + +V S  QHAD LTK
Sbjct:  381 DQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTK 594          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.330e-52
Identity = 105/248 (42.34%), Postives = 147/248 (59.27%), Query Frame = 3
Query:  339 KEVRCQEGSQGTGCVGVPTLSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTKTARRE 1079
            +E+  Q G +    V +P   K  +    +E E     P+RE VG++MW AT TRPDIA  VRAVAR+C +P   H KA + I  Y+  T   GI +  G   G+ M+ + D+D+      RRSVSG ++M   G ++W SR Q+     T+EAEYVA+A+ +K VLFLRQV  FM P   +  + VFEDN+GAI++A N   +  +KHID +HHL+R   + K + + +V SE QHAD LTK   +E
Sbjct:   36 EELAAQYGVEWGKSVPLPVSVKLTDL---DENEACADVPFRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKE 280          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 2.330e-52
Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 3
Query:  426 EEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTKTARRE 1079
            +E E     P+RE VG+LMW AT TRPDIA  VRAVAR+C +P   H KA + I  Y+  T   GI +  G   G+ M+ + D+D+ +    RRSVSG ++M   G ++W SR Q+     T+EAEYVA+A+ +K VLFLRQV  FM P   +  + VFEDN+GAI++A N   +  +KHIDV+HH +R+  + K + +  V +  QHAD LTK   +E
Sbjct:   90 DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKE 308          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 3.520e-52
Identity = 97/219 (44.29%), Postives = 137/219 (62.56%), Query Frame = 3
Query:  426 EEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTKTARRE 1079
            +E E     P+RE VG+LMW AT TRPDIA  VRAVAR+C +P   H KA + I  Y+  T   GI +  G   G+ M+ + D+D+ +    RRSVSG ++M   G ++W SR Q+     T+EAEYVA+A+ +K VLFLRQV  FM P   +  + VFEDN+GAI++  N   +  +KHIDV+HH +R+  + K + + +V ++ QHAD LTK   +E
Sbjct:  145 DENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKE 363          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.560e-52
Identity = 101/223 (45.29%), Postives = 147/223 (65.92%), Query Frame = 3
Query:  396 LSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTK 1064
            L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+  V  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + WRS  Q+  A  ++EAEY+AL++ VK  +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID+++H +R+   +  V + YV + +Q AD +TK
Sbjct:   80 LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSDEVELQYVDTNNQLADFMTK 300          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 3.950e-52
Identity = 98/221 (44.34%), Postives = 138/221 (62.44%), Query Frame = 3
Query:  426 EEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYG-GQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTKTARREKV 1085
            +E E     P+RE VG+LMW AT TRPDIA  VRAVAR+C +P   H KA + I  Y+  T   GI +  G   G+ M+ + D+D+ +    RRSVSG ++M   G ++W SR Q+     T+EAEYVA+A+ +K VLFLRQV  FM P   +  + VFEDN+GAI++A N   +  +KHIDV+HH +R+  + K + + +V +  QHAD LTK   +E +
Sbjct:  207 DENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESL 427          
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Match: A0A6A3SPB0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SPB0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 6.310e-52
Identity = 100/223 (44.84%), Postives = 146/223 (65.47%), Query Frame = 3
Query:  396 LSKADEPQSPEEKEEMKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIFQYLLHTKDWGIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAVNVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSEDQHADLLTK 1064
            L+KADEPQ+ E+K +MK  PYR  VG+LM+ A  TRPDI+  V  ++RF ENPG  H  A +K+ +YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + WRS  Q+  A  ++E EY+AL++ VK  +++R++   +    +VGA  ++EDN+GA+ LA N     RTKHID+++H +R+   +  V + YV +++Q AD +TK
Sbjct:   39 LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEGEYMALSDCVKECVWMRRLLVGIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTK 259          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1438.3135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE4.550e-5547.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTK6_9PHAE5.290e-5546.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR24_9PHAE1.300e-5346.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB8_9PHAE1.400e-5347.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8K2_9PHAE1.330e-5242.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE2.330e-5244.75Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4G9_9PHAE3.520e-5244.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3GI70_9STRA3.560e-5245.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEF2_9PHAE3.950e-5244.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3SPB0_9STRA6.310e-5244.84Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1438contigF-serratus_M_contig1438:70634..71724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue1.3e-42
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1091
Cds size651
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.3384697-UTR-F-serratus_M_contig1438:70633..710731622929424.3384697-UTR-F-serratus_M_contig1438:70633..71073Fucus serratus maleUTRF-serratus_M_contig1438 70634..71073 +
1690962845.4873059-UTR-F-serratus_M_contig1438:70633..710731690962845.4873059-UTR-F-serratus_M_contig1438:70633..71073Fucus serratus maleUTRF-serratus_M_contig1438 70634..71073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.3512204-CDS-F-serratus_M_contig1438:71073..717241622929424.3512204-CDS-F-serratus_M_contig1438:71073..71724Fucus serratus maleCDSF-serratus_M_contig1438 71074..71724 +
1690962845.5036068-CDS-F-serratus_M_contig1438:71073..717241690962845.5036068-CDS-F-serratus_M_contig1438:71073..71724Fucus serratus maleCDSF-serratus_M_contig1438 71074..71724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1438.3135.1prot_F-serratus_M_contig1438.3135.1Fucus serratus malepolypeptideF-serratus_M_contig1438 71074..71724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1438.3135.1

>prot_F-serratus_M_contig1438.3135.1 ID=prot_F-serratus_M_contig1438.3135.1|Name=mRNA_F-serratus_M_contig1438.3135.1|organism=Fucus serratus male|type=polypeptide|length=217bp
MKMFPYREAVGALMWTATMTRPDIACVVRAVARFCENPGPAHKKAVMKIF
QYLLHTKDWGIAYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKG
AISWRSRMQEVTAAGTSEAEYVALAEAVKGVLFLRQVQEFMEPSMRVGAV
NVFEDNEGAIKLATNKHASRRTKHIDVKHHLVRDASDAKRVRVAYVRSED
QHADLLTKTARREKVL*
back to top

mRNA from alignment at F-serratus_M_contig1438:70634..71724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1438.3135.1 ID=mRNA_F-serratus_M_contig1438.3135.1|Name=mRNA_F-serratus_M_contig1438.3135.1|organism=Fucus serratus male|type=mRNA|length=1091bp|location=Sequence derived from alignment at F-serratus_M_contig1438:70634..71724+ (Fucus serratus male)
AAGGCCATTCACGGACTCGTGCAGGCGGGGAGGTGTTGGAACAATAAGTT CTCTGACGACATGACGGCGATTGGGTTCGAGCAGGCAAAGGCGGACCCGT GCGTGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGATGGTGGTGGTCGTG CACGTAGACGACATCCTGGCCCACGCAAAAGACAAAGCGACGATGGATAG ATTCGCGGCCGAGCTCGGGCAGAAGTTTAAGTTGAAGGACGTGGGGGACG CCGAATACTACATGGGCTGTCACATCACCCGGAACCGCAAGACGCGTGAG TTAAAGTTCGACCAACACCTGTACGTGGAGTCGATGATAAAGAGGTTCGA TGTCAAGAAGGAAGCCAAGGTACCGGCTGCGTCGGGGTGCCGACGCTCTC AAAGGCGGATGAGCCGCAAAGCCCAGAGGAAAAGGAAGAGATGAAGATGT TCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCGACGATGACA CGGCCGGATATCGCGTGCGTCGTACGCGCTGTGGCCAGGTTCTGCGAAAA CCCCGGGCCAGCGCACAAGAAGGCAGTGATGAAGATCTTCCAGTATCTCC TTCACACGAAAGATTGGGGAATTGCGTATGGTGGACAGGGCTGTGGACTC TGCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGCCTGGACACAAG ACGATCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGGGGGCGATTAGTT GGCGCTCTAGAATGCAAGAGGTAACGGCAGCAGGTACCTCGGAGGCAGAG TACGTTGCCTTAGCGGAGGCAGTCAAGGGTGTACTGTTTTTGAGACAGGT GCAGGAGTTCATGGAACCGTCAATGAGGGTCGGTGCGGTAAATGTGTTTG AAGATAATGAGGGGGCCATTAAGCTGGCCACAAACAAGCATGCTAGCCGT AGGACTAAGCACATTGATGTGAAACATCACCTAGTGAGGGACGCGTCTGA CGCAAAAAGGGTAAGAGTAGCGTACGTAAGGTCGGAAGATCAACACGCGG ATTTGCTCACGAAAACCGCTAGACGTGAAAAAGTTCTGTAA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1438:70634..71724+

>mRNA_F-serratus_M_contig1438.3135.1 ID=mRNA_F-serratus_M_contig1438.3135.1|Name=mRNA_F-serratus_M_contig1438.3135.1|organism=Fucus serratus male|type=CDS|length=1302bp|location=Sequence derived from alignment at F-serratus_M_contig1438:70634..71724+ (Fucus serratus male)
ATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGC
GACGATGACACGGCCGGATATCGCGTGCGTCGTACGCGCTGTGGCCAGGT
TCTGCGAAAACCCCGGGCCAGCGCACAAGAAGGCAGTGATGAAGATCTTC
CAGTATCTCCTTCACACGAAAGATTGGGGAATTGCGTATGGTGGACAGGG
CTGTGGACTCTGCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGCC
TGGACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGGGG
GCGATTAGTTGGCGCTCTAGAATGCAAGAGGTAACGGCAGCAGGTACCTC
GGAGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGGTGTACTGTTTT
TGAGACAGGTGCAGGAGTTCATGGAACCGTCAATGAGGGTCGGTGCGGTA
AATGTGTTTGAAGATAATGAGGGGGCCATTAAGCTGGCCACAAACAAGCA
TGCTAGCCGTAGGACTAAGCACATTGATGTGAAACATCACCTAGTGAGGG
ACGCGTCTGACGCAAAAAGGGTAAGAGTAGCGTACGTAAGGTCGGAAGAT
CAACACGCGGATTTGCTCACGAAAACCGCTAGACGTGAAAAAGTTCTGTA
AATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGG
CGACGATGACACGGCCGGATATCGCGTGCGTCGTACGCGCTGTGGCCAGG
TTCTGCGAAAACCCCGGGCCAGCGCACAAGAAGGCAGTGATGAAGATCTT
CCAGTATCTCCTTCACACGAAAGATTGGGGAATTGCGTATGGTGGACAGG
GCTGTGGACTCTGCATGGAAGCGTATACGGATTCGGATTTCGGAGCCTGC
CTGGACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGGG
GGCGATTAGTTGGCGCTCTAGAATGCAAGAGGTAACGGCAGCAGGTACCT
CGGAGGCAGAGTACGTTGCCTTAGCGGAGGCAGTCAAGGGTGTACTGTTT
TTGAGACAGGTGCAGGAGTTCATGGAACCGTCAATGAGGGTCGGTGCGGT
AAATGTGTTTGAAGATAATGAGGGGGCCATTAAGCTGGCCACAAACAAGC
ATGCTAGCCGTAGGACTAAGCACATTGATGTGAAACATCACCTAGTGAGG
GACGCGTCTGACGCAAAAAGGGTAAGAGTAGCGTACGTAAGGTCGGAAGA
TCAACACGCGGATTTGCTCACGAAAACCGCTAGACGTGAAAAAGTTCTGT
AA
back to top