mRNA_F-serratus_M_contig1435.3119.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1435.3119.1
Unique NamemRNA_F-serratus_M_contig1435.3119.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1435.3119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1435contigF-serratus_M_contig1435:248129..248806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size615
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1435.3119.1prot_F-serratus_M_contig1435.3119.1Fucus serratus malepolypeptideF-serratus_M_contig1435 248240..248596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.8073826-UTR-F-serratus_M_contig1435:248128..2482391622929420.8073826-UTR-F-serratus_M_contig1435:248128..248239Fucus serratus maleUTRF-serratus_M_contig1435 248129..248239 +
1690962844.0520246-UTR-F-serratus_M_contig1435:248128..2482391690962844.0520246-UTR-F-serratus_M_contig1435:248128..248239Fucus serratus maleUTRF-serratus_M_contig1435 248129..248239 +
1622929420.8373952-UTR-F-serratus_M_contig1435:248596..2486451622929420.8373952-UTR-F-serratus_M_contig1435:248596..248645Fucus serratus maleUTRF-serratus_M_contig1435 248597..248645 +
1690962844.0747304-UTR-F-serratus_M_contig1435:248596..2486451690962844.0747304-UTR-F-serratus_M_contig1435:248596..248645Fucus serratus maleUTRF-serratus_M_contig1435 248597..248645 +
1622929420.8546937-UTR-F-serratus_M_contig1435:248708..2488061622929420.8546937-UTR-F-serratus_M_contig1435:248708..248806Fucus serratus maleUTRF-serratus_M_contig1435 248709..248806 +
1690962844.0853162-UTR-F-serratus_M_contig1435:248708..2488061690962844.0853162-UTR-F-serratus_M_contig1435:248708..248806Fucus serratus maleUTRF-serratus_M_contig1435 248709..248806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.8234353-CDS-F-serratus_M_contig1435:248239..2485961622929420.8234353-CDS-F-serratus_M_contig1435:248239..248596Fucus serratus maleCDSF-serratus_M_contig1435 248240..248596 +
1690962844.0638766-CDS-F-serratus_M_contig1435:248239..2485961690962844.0638766-CDS-F-serratus_M_contig1435:248239..248596Fucus serratus maleCDSF-serratus_M_contig1435 248240..248596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1435.3119.1

>prot_F-serratus_M_contig1435.3119.1 ID=prot_F-serratus_M_contig1435.3119.1|Name=mRNA_F-serratus_M_contig1435.3119.1|organism=Fucus serratus male|type=polypeptide|length=119bp
MLTCYTCIREEGSNFDPFGSTGTLQYWDAASHRVDLHRHLVMLYLPLSPS
LSPKGSAAALFSNFLSQSPQRNATATPTHHPTSRLLNYSMIRSSSTLCID
EKPNGGCKTTRLLAQTER*
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mRNA from alignment at F-serratus_M_contig1435:248129..248806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1435.3119.1 ID=mRNA_F-serratus_M_contig1435.3119.1|Name=mRNA_F-serratus_M_contig1435.3119.1|organism=Fucus serratus male|type=mRNA|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig1435:248129..248806+ (Fucus serratus male)
ACTGCTTGCCCCTTTGCATCCAATGACCCAATTTACCCAATCCCCTGCGT
TTGGCGCATTCTTCGATGGCATTCCAGTGTTTACCTCATTTTTTCCTGGC
AACAACTACATATGCTAACATGTTATACTTGCATCAGGGAGGAAGGGTCA
AACTTTGACCCTTTTGGCTCCACCGGGACGCTCCAGTACTGGGACGCTGC
AAGTCACCGCGTGGACCTCCATCGTCATCTTGTCATGCTATACCTCCCTC
TTTCCCCTTCCCTTTCTCCGAAGGGCAGCGCAGCAGCTCTGTTCTCGAAT
TTCCTTTCACAGAGCCCCCAGCGAAATGCAACAGCGACGCCGACACACCA
CCCTACAAGTCGACTGCTCAACTATTCAATGATTCGGTCATCATCTACTC
TTTGTATCGACGAGAAACCCAACGGAGGCTGTAAAACTACACGGCTGCTG
GCACAAACGGAACGGTAAGTGACGGGACACCGGCCTCTGTCCAGCCGATA
AATCAAAACCAACGAATGCAAACGAACCGAACCAAACCAAACCGAACCGA
ACCACAACAAAATGCACTAGAAAATATTAGATAAAACCAAACCAAACCAA
ACCAAACGCAGATCTCGTGGGATGGACGGAGCAACTGCTTCCCTCGAATA
CTGAATGTATGGATGTATGAACGTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1435:248129..248806+

>mRNA_F-serratus_M_contig1435.3119.1 ID=mRNA_F-serratus_M_contig1435.3119.1|Name=mRNA_F-serratus_M_contig1435.3119.1|organism=Fucus serratus male|type=CDS|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig1435:248129..248806+ (Fucus serratus male)
ATGCTAACATGTTATACTTGCATCAGGGAGGAAGGGTCAAACTTTGACCC
TTTTGGCTCCACCGGGACGCTCCAGTACTGGGACGCTGCAAGTCACCGCG
TGGACCTCCATCGTCATCTTGTCATGCTATACCTCCCTCTTTCCCCTTCC
CTTTCTCCGAAGGGCAGCGCAGCAGCTCTGTTCTCGAATTTCCTTTCACA
GAGCCCCCAGCGAAATGCAACAGCGACGCCGACACACCACCCTACAAGTC
GACTGCTCAACTATTCAATGATTCGGTCATCATCTACTCTTTGTATCGAC
GAGAAACCCAACGGAGGCTGTAAAACTACACGGCTGCTGGCACAAACGGA
ACGGTAAATGCTAACATGTTATACTTGCATCAGGGAGGAAGGGTCAAACT
TTGACCCTTTTGGCTCCACCGGGACGCTCCAGTACTGGGACGCTGCAAGT
CACCGCGTGGACCTCCATCGTCATCTTGTCATGCTATACCTCCCTCTTTC
CCCTTCCCTTTCTCCGAAGGGCAGCGCAGCAGCTCTGTTCTCGAATTTCC
TTTCACAGAGCCCCCAGCGAAATGCAACAGCGACGCCGACACACCACCCT
ACAAGTCGACTGCTCAACTATTCAATGATTCGGTCATCATCTACTCTTTG
TATCGACGAGAAACCCAACGGAGGCTGTAAAACTACACGGCTGCTGGCAC
AAACGGAACGGTAA
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