mRNA_F-serratus_M_contig1435.3111.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1435.3111.1
Unique NamemRNA_F-serratus_M_contig1435.3111.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1435.3111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1435contigF-serratus_M_contig1435:21293..22073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size781
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1435.3111.1prot_F-serratus_M_contig1435.3111.1Fucus serratus malepolypeptideF-serratus_M_contig1435 21396..21839 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.7280889-UTR-F-serratus_M_contig1435:21292..213951622929420.7280889-UTR-F-serratus_M_contig1435:21292..21395Fucus serratus maleUTRF-serratus_M_contig1435 21293..21395 +
1690962844.0219843-UTR-F-serratus_M_contig1435:21292..213951690962844.0219843-UTR-F-serratus_M_contig1435:21292..21395Fucus serratus maleUTRF-serratus_M_contig1435 21293..21395 +
1622929420.7665157-UTR-F-serratus_M_contig1435:21839..220731622929420.7665157-UTR-F-serratus_M_contig1435:21839..22073Fucus serratus maleUTRF-serratus_M_contig1435 21840..22073 +
1690962844.0391383-UTR-F-serratus_M_contig1435:21839..220731690962844.0391383-UTR-F-serratus_M_contig1435:21839..22073Fucus serratus maleUTRF-serratus_M_contig1435 21840..22073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929420.7539546-CDS-F-serratus_M_contig1435:21395..218391622929420.7539546-CDS-F-serratus_M_contig1435:21395..21839Fucus serratus maleCDSF-serratus_M_contig1435 21396..21839 +
1690962844.030925-CDS-F-serratus_M_contig1435:21395..218391690962844.030925-CDS-F-serratus_M_contig1435:21395..21839Fucus serratus maleCDSF-serratus_M_contig1435 21396..21839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1435.3111.1

>prot_F-serratus_M_contig1435.3111.1 ID=prot_F-serratus_M_contig1435.3111.1|Name=mRNA_F-serratus_M_contig1435.3111.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MSSPVRSHTLFKKTGTLYPGEGGSAHQRTTEILYYNTKLYNRRRGFAKNI
DRLATASTALHRQTGTYLLQQIFIAVECTRYQYSVSTTTNTKRYKNAQSE
VRQQKQPWKDGFNNRENKPTKIDTSMEFGNERRTIPPIDILSPAHRL*
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mRNA from alignment at F-serratus_M_contig1435:21293..22073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1435.3111.1 ID=mRNA_F-serratus_M_contig1435.3111.1|Name=mRNA_F-serratus_M_contig1435.3111.1|organism=Fucus serratus male|type=mRNA|length=781bp|location=Sequence derived from alignment at F-serratus_M_contig1435:21293..22073+ (Fucus serratus male)
GACAAGCAAAAAACCAACTCAAGCTTTTTCATGTTTCATTACGGCGACAG
CCTCCGACGAACAGGTGAAAGAGAAAGACCGTTCACGGTGATGCAGAGGC
AAAATGTCGTCACCTGTAAGGTCTCACACACTTTTTAAAAAAACTGGCAC
TCTTTATCCTGGCGAAGGAGGCAGCGCGCATCAACGCACGACGGAAATAC
TGTATTATAATACAAAATTATACAACAGGAGGAGAGGATTCGCGAAAAAC
ATCGATCGCCTAGCTACAGCATCAACTGCGCTACACCGACAAACTGGAAC
TTATCTTCTGCAACAAATATTCATAGCTGTTGAGTGTACCAGGTACCAGT
ACAGTGTCTCGACAACCACGAACACAAAAAGATACAAAAATGCACAAAGC
GAAGTCAGACAACAAAAACAACCGTGGAAAGACGGATTTAACAATAGAGA
AAACAAGCCCACAAAAATTGATACATCCATGGAATTTGGTAACGAACGGA
GAACAATTCCGCCAATTGATATCCTGTCGCCTGCCCATCGATTATAGAAA
ACCAACGACACGCGCCTGCCGTACTGCAGCACACTCCTCAGGAGTTCATA
TGTCCTGTATGCCATGCAGCATGGCCATCAACGCAAGCAACCAAACGAGT
ACCATCTACTAGTGCAGTGTTTCCTCCTTGAAAGTTATAGCCGGGCTGGC
GATAGACTACACAATACTGTGCCCCCTTTTTCCATCCACCATTCCCTTCA
TGAGATGGAGTGCCTTCAGTCATCCACAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1435:21293..22073+

>mRNA_F-serratus_M_contig1435.3111.1 ID=mRNA_F-serratus_M_contig1435.3111.1|Name=mRNA_F-serratus_M_contig1435.3111.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig1435:21293..22073+ (Fucus serratus male)
ATGTCGTCACCTGTAAGGTCTCACACACTTTTTAAAAAAACTGGCACTCT
TTATCCTGGCGAAGGAGGCAGCGCGCATCAACGCACGACGGAAATACTGT
ATTATAATACAAAATTATACAACAGGAGGAGAGGATTCGCGAAAAACATC
GATCGCCTAGCTACAGCATCAACTGCGCTACACCGACAAACTGGAACTTA
TCTTCTGCAACAAATATTCATAGCTGTTGAGTGTACCAGGTACCAGTACA
GTGTCTCGACAACCACGAACACAAAAAGATACAAAAATGCACAAAGCGAA
GTCAGACAACAAAAACAACCGTGGAAAGACGGATTTAACAATAGAGAAAA
CAAGCCCACAAAAATTGATACATCCATGGAATTTGGTAACGAACGGAGAA
CAATTCCGCCAATTGATATCCTGTCGCCTGCCCATCGATTATAGATGTCG
TCACCTGTAAGGTCTCACACACTTTTTAAAAAAACTGGCACTCTTTATCC
TGGCGAAGGAGGCAGCGCGCATCAACGCACGACGGAAATACTGTATTATA
ATACAAAATTATACAACAGGAGGAGAGGATTCGCGAAAAACATCGATCGC
CTAGCTACAGCATCAACTGCGCTACACCGACAAACTGGAACTTATCTTCT
GCAACAAATATTCATAGCTGTTGAGTGTACCAGGTACCAGTACAGTGTCT
CGACAACCACGAACACAAAAAGATACAAAAATGCACAAAGCGAAGTCAGA
CAACAAAAACAACCGTGGAAAGACGGATTTAACAATAGAGAAAACAAGCC
CACAAAAATTGATACATCCATGGAATTTGGTAACGAACGGAGAACAATTC
CGCCAATTGATATCCTGTCGCCTGCCCATCGATTATAG
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